RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 MTFR1LQ9H019 292 aa21.59■■□□□ 1.05
MRPS28-209ENST00000522987 NBPF6Q5VWK0 638 aa21.57■■□□□ 1.04
MRPS28-209ENST00000522987 ZCRB1Q8TBF4 217 aaKnown RBP21.57■■□□□ 1.04
MRPS28-209ENST00000522987 NBPF4Q96M43 638 aa21.57■■□□□ 1.04
MRPS28-209ENST00000522987 QSER1Q2KHR3 1735 aa21.57■■□□□ 1.04
MRPS28-209ENST00000522987 KLHL34Q8N239 644 aa21.55■■□□□ 1.04
MRPS28-209ENST00000522987 SGIP1Q9BQI5 828 aa21.55■■□□□ 1.04
MRPS28-209ENST00000522987 SYT17Q9BSW7 474 aa21.55■■□□□ 1.04
MRPS28-209ENST00000522987 CHD4Q14839 1912 aa21.55■■□□□ 1.04
MRPS28-209ENST00000522987 RTL1A6NKG5 1358 aa21.54■■□□□ 1.04
MRPS28-209ENST00000522987 SLC24A1O60721 1099 aa21.54■■□□□ 1.04
MRPS28-209ENST00000522987 HSP90AB2PQ58FF8 381 aa21.54■■□□□ 1.04
MRPS28-209ENST00000522987 MAP2P11137 1827 aaKnown RBP21.54■■□□□ 1.04
MRPS28-209ENST00000522987 NSD2O96028 1365 aa21.53■■□□□ 1.04
MRPS28-209ENST00000522987 AKT1S1Q96B36 256 aa21.53■■□□□ 1.04
MRPS28-209ENST00000522987 ARXQ96QS3 562 aa21.53■■□□□ 1.04
MRPS28-209ENST00000522987 SMG6Q86US8 1419 aaKnown RBP21.52■■□□□ 1.04
MRPS28-209ENST00000522987 ITGB4P16144 1822 aa21.52■■□□□ 1.04
MRPS28-209ENST00000522987 RAPGEF4Q8WZA2 1011 aa21.51■■□□□ 1.03
MRPS28-209ENST00000522987 POLR3GLQ9BT43 218 aa21.51■■□□□ 1.03
MRPS28-209ENST00000522987 CARD14Q9BXL6 1004 aa21.51■■□□□ 1.03
MRPS28-209ENST00000522987 PCGF6Q9BYE7 350 aa21.51■■□□□ 1.03
MRPS28-209ENST00000522987 NSD3Q9BZ95 1437 aa21.51■■□□□ 1.03
MRPS28-209ENST00000522987 PNPLA7Q6ZV29 1317 aa21.5■■□□□ 1.03
MRPS28-209ENST00000522987 TOGARAM1Q9Y4F4 1720 aa21.49■■□□□ 1.03
MRPS28-209ENST00000522987 PPM1GO15355 546 aaPredicted RBP21.49■■□□□ 1.03
MRPS28-209ENST00000522987 TATP17735 454 aaPredicted RBP21.49■■□□□ 1.03
MRPS28-209ENST00000522987 SLC27A3Q5K4L6 730 aa21.49■■□□□ 1.03
MRPS28-209ENST00000522987 TFCP2L1Q9NZI6 479 aa21.49■■□□□ 1.03
MRPS28-209ENST00000522987 EMILIN1Q9Y6C2 1016 aa21.49■■□□□ 1.03
MRPS28-209ENST00000522987 TAF1LQ8IZX4 1826 aa21.48■■□□□ 1.03
MRPS28-209ENST00000522987 CCNL1Q9UK58 526 aaPredicted RBP21.48■■□□□ 1.03
MRPS28-209ENST00000522987 C5P01031 1676 aa21.47■■□□□ 1.03
MRPS28-209ENST00000522987 MSH5O43196 834 aa21.47■■□□□ 1.03
MRPS28-209ENST00000522987 CDCA8Q53HL2 280 aa21.47■■□□□ 1.03
MRPS28-209ENST00000522987 INSRP06213 1382 aa21.47■■□□□ 1.03
MRPS28-209ENST00000522987 FLT4P35916 1363 aa21.47■■□□□ 1.03
MRPS28-209ENST00000522987 COL24A1Q17RW2 1714 aa21.46■■□□□ 1.03
MRPS28-209ENST00000522987 PKD1L3Q7Z443 1732 aa21.44■■□□□ 1.02
MRPS28-209ENST00000522987 PELP1Q8IZL8 1130 aaKnown RBP21.44■■□□□ 1.02
MRPS28-209ENST00000522987 ANKRD26Q9UPS8 1709 aa21.43■■□□□ 1.02
MRPS28-209ENST00000522987 POLD1P28340 1107 aa21.42■■□□□ 1.02
MRPS28-209ENST00000522987 MSL1Q68DK7 614 aa21.42■■□□□ 1.02
MRPS28-209ENST00000522987 MPRIPQ6WCQ1 1025 aa21.42■■□□□ 1.02
MRPS28-209ENST00000522987 PCDH11XQ9BZA7 1347 aa21.41■■□□□ 1.02
MRPS28-209ENST00000522987 PCDH11YQ9BZA8 1340 aa21.41■■□□□ 1.02
MRPS28-209ENST00000522987 CYP27B1O15528 508 aa21.41■■□□□ 1.02
MRPS28-209ENST00000522987 CGNL1Q0VF96 1302 aa21.4■■□□□ 1.02
MRPS28-209ENST00000522987 TNNT2P45379 298 aaPredicted RBP21.4■■□□□ 1.02
MRPS28-209ENST00000522987 GPR162Q16538 588 aa21.4■■□□□ 1.02
MRPS28-209ENST00000522987 SLC16A10Q8TF71 515 aa21.4■■□□□ 1.02
MRPS28-209ENST00000522987 COL23A1Q86Y22 540 aaPredicted RBP21.39■■□□□ 1.01
MRPS28-209ENST00000522987 NLGN2Q8NFZ4 835 aa21.39■■□□□ 1.01
MRPS28-209ENST00000522987 ZNF784Q8NCA9 323 aaPredicted RBP21.38■■□□□ 1.01
MRPS28-209ENST00000522987 PALLDQ8WX93 1383 aa21.37■■□□□ 1.01
MRPS28-209ENST00000522987 MAP3K5Q99683 1374 aa21.37■■□□□ 1.01
MRPS28-209ENST00000522987 SMIM5Q71RC9 77 aa21.37■■□□□ 1.01
MRPS28-209ENST00000522987 KIF24Q5T7B8 1368 aa21.36■■□□□ 1.01
MRPS28-209ENST00000522987 C4BP0C0L5 1744 aa21.36■■□□□ 1.01
MRPS28-209ENST00000522987 UBR3Q6ZT12 1888 aa21.35■■□□□ 1.01
MRPS28-209ENST00000522987 EYA1Q99502 592 aa21.34■■□□□ 1.01
MRPS28-209ENST00000522987 PIGBQ92521 554 aa21.32■■□□□ 1
MRPS28-209ENST00000522987 POLKQ9UBT6 870 aa21.32■■□□□ 1
MRPS28-209ENST00000522987 WASHC2AQ641Q2 1341 aa21.31■■□□□ 1
MRPS28-209ENST00000522987 PHF14O94880 888 aa21.31■■□□□ 1
MRPS28-209ENST00000522987 HSPA5P11021 654 aaKnown RBP21.31■■□□□ 1
MRPS28-209ENST00000522987 AMIGO3Q86WK7 504 aa21.31■■□□□ 1
MRPS28-209ENST00000522987 UTRNP46939 3433 aa21.3■■□□□ 1
MRPS28-209ENST00000522987 NCAPD2Q15021 1401 aa21.3■■□□□ 1
MRPS28-209ENST00000522987 TIMELESSQ9UNS1 1208 aa21.3■■□□□ 1
MRPS28-209ENST00000522987 SPG7Q9UQ90 795 aa21.3■■□□□ 1
MRPS28-209ENST00000522987 EIF4A2Q14240 407 aaKnown RBP21.28■■□□□ 1
MRPS28-209ENST00000522987 AK7Q96M32 723 aa21.28■■□□□ 1
MRPS28-209ENST00000522987 YBX3P16989 372 aaKnown RBP eCLIP21.27■■□□□ 1
MRPS28-209ENST00000522987 SMARCC1Q92922 1105 aaPredicted RBP21.27■■□□□ 1
MRPS28-209ENST00000522987 WWC3Q9ULE0 1092 aa21.27■■□□□ 1
MRPS28-209ENST00000522987 PANK3Q9H999 370 aa21.26■□□□□ 0.99
MRPS28-209ENST00000522987 TMOD3Q9NYL9 352 aa21.26■□□□□ 0.99
MRPS28-209ENST00000522987 ASAP1Q9ULH1 1129 aa21.26■□□□□ 0.99
MRPS28-209ENST00000522987 EIF4G2P78344 907 aaKnown RBP eCLIP21.25■□□□□ 0.99
MRPS28-209ENST00000522987 NKX1-1Q15270 411 aaPredicted RBP21.25■□□□□ 0.99
MRPS28-209ENST00000522987 PHKG2P15735 406 aa21.24■□□□□ 0.99
MRPS28-209ENST00000522987 LINC00116Q8NCU8 138 aa21.24■□□□□ 0.99
MRPS28-209ENST00000522987 CLSPNQ9HAW4 1339 aa21.24■□□□□ 0.99
MRPS28-209ENST00000522987 LOC102724428A0A0B4J2F2 783 aa21.23■□□□□ 0.99
MRPS28-209ENST00000522987 SIK1P57059 783 aa21.23■□□□□ 0.99
MRPS28-209ENST00000522987 CCER1Q8TC90 406 aaPredicted RBP21.23■□□□□ 0.99
MRPS28-209ENST00000522987 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.22■□□□□ 0.99
MRPS28-209ENST00000522987 ITPK1Q13572 414 aa21.22■□□□□ 0.99
MRPS28-209ENST00000522987 IFNL2Q8IZJ0 200 aa21.22■□□□□ 0.99
MRPS28-209ENST00000522987 FLAD1Q8NFF5 587 aa21.21■□□□□ 0.99
MRPS28-209ENST00000522987 ATP6V1AP38606 617 aa21.2■□□□□ 0.98
MRPS28-209ENST00000522987 GOLGB1Q14789 3259 aaKnown RBP21.19■□□□□ 0.98
MRPS28-209ENST00000522987 GNPATO15228 680 aa21.19■□□□□ 0.98
MRPS28-209ENST00000522987 ATG3Q9NT62 314 aa21.19■□□□□ 0.98
MRPS28-209ENST00000522987 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.19■□□□□ 0.98
MRPS28-209ENST00000522987 IGSF1Q8N6C5 1336 aa21.18■□□□□ 0.98
MRPS28-209ENST00000522987 VIRMAQ69YN4 1812 aaKnown RBP21.18■□□□□ 0.98
MRPS28-209ENST00000522987 SENP3-EIF4A1A0A087X0R7 540 aa21.17■□□□□ 0.98
MRPS28-209ENST00000522987 MORC1Q86VD1 984 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms