RNA–Protein interactions for RNA: ENST00000522504.5

TRAPPC9-213, Transcript of trafficking protein particle complex 9, humanhuman

TSL 3

Gene TRAPPC9, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-213ENST00000522504 ZCRB1Q8TBF4 217 aaKnown RBP21.53■■□□□ 1.04
TRAPPC9-213ENST00000522504 NBPF6Q5VWK0 638 aa21.52■■□□□ 1.04
TRAPPC9-213ENST00000522504 NBPF4Q96M43 638 aa21.52■■□□□ 1.04
TRAPPC9-213ENST00000522504 RGPD2P0DJD1 1756 aa21.51■■□□□ 1.03
TRAPPC9-213ENST00000522504 USHBP1Q8N6Y0 703 aa21.51■■□□□ 1.03
TRAPPC9-213ENST00000522504 SLC16A10Q8TF71 515 aa21.51■■□□□ 1.03
TRAPPC9-213ENST00000522504 TFCP2L1Q9NZI6 479 aa21.51■■□□□ 1.03
TRAPPC9-213ENST00000522504 SHANK3Q9BYB0 1731 aa21.51■■□□□ 1.03
TRAPPC9-213ENST00000522504 FYB1O15117 783 aa21.5■■□□□ 1.03
TRAPPC9-213ENST00000522504 GGNBP2Q9H3C7 697 aa21.5■■□□□ 1.03
TRAPPC9-213ENST00000522504 DOT1LQ8TEK3 1739 aa21.49■■□□□ 1.03
TRAPPC9-213ENST00000522504 KLHL34Q8N239 644 aa21.48■■□□□ 1.03
TRAPPC9-213ENST00000522504 TUBGCP6Q96RT7 1819 aa21.48■■□□□ 1.03
TRAPPC9-213ENST00000522504 QSER1Q2KHR3 1735 aa21.47■■□□□ 1.03
TRAPPC9-213ENST00000522504 GPR162Q16538 588 aa21.47■■□□□ 1.03
TRAPPC9-213ENST00000522504 NLGN2Q8NFZ4 835 aa21.47■■□□□ 1.03
TRAPPC9-213ENST00000522504 RTL1A6NKG5 1358 aa21.47■■□□□ 1.03
TRAPPC9-213ENST00000522504 COL24A1Q17RW2 1714 aa21.46■■□□□ 1.03
TRAPPC9-213ENST00000522504 POLD1P28340 1107 aa21.46■■□□□ 1.03
TRAPPC9-213ENST00000522504 CCNL1Q9UK58 526 aaPredicted RBP21.46■■□□□ 1.03
TRAPPC9-213ENST00000522504 LY75O60449 1722 aa21.46■■□□□ 1.03
TRAPPC9-213ENST00000522504 HSP90AB2PQ58FF8 381 aa21.45■■□□□ 1.02
TRAPPC9-213ENST00000522504 COL23A1Q86Y22 540 aaPredicted RBP21.44■■□□□ 1.02
TRAPPC9-213ENST00000522504 CEP350Q5VT06 3117 aa21.43■■□□□ 1.02
TRAPPC9-213ENST00000522504 CHD4Q14839 1912 aa21.43■■□□□ 1.02
TRAPPC9-213ENST00000522504 SLC24A1O60721 1099 aa21.42■■□□□ 1.02
TRAPPC9-213ENST00000522504 USP47Q96K76 1375 aa21.42■■□□□ 1.02
TRAPPC9-213ENST00000522504 CGNL1Q0VF96 1302 aa21.41■■□□□ 1.02
TRAPPC9-213ENST00000522504 TMF1P82094 1093 aa21.41■■□□□ 1.02
TRAPPC9-213ENST00000522504 PELP1Q8IZL8 1130 aaKnown RBP21.41■■□□□ 1.02
TRAPPC9-213ENST00000522504 RAPGEF4Q8WZA2 1011 aa21.41■■□□□ 1.02
TRAPPC9-213ENST00000522504 MSL1Q68DK7 614 aa21.4■■□□□ 1.02
TRAPPC9-213ENST00000522504 INSRP06213 1382 aa21.39■■□□□ 1.02
TRAPPC9-213ENST00000522504 MSH5O43196 834 aa21.39■■□□□ 1.01
TRAPPC9-213ENST00000522504 TATP17735 454 aaPredicted RBP21.39■■□□□ 1.01
TRAPPC9-213ENST00000522504 CARD14Q9BXL6 1004 aa21.39■■□□□ 1.01
TRAPPC9-213ENST00000522504 SMG6Q86US8 1419 aaKnown RBP21.38■■□□□ 1.01
TRAPPC9-213ENST00000522504 CYP27B1O15528 508 aa21.38■■□□□ 1.01
TRAPPC9-213ENST00000522504 YBX3P16989 372 aaKnown RBP eCLIP21.38■■□□□ 1.015e-6■■■□□ 19.1
TRAPPC9-213ENST00000522504 C1QTNF8P60827 252 aa21.38■■□□□ 1.01
TRAPPC9-213ENST00000522504 FLT4P35916 1363 aa21.36■■□□□ 1.01
TRAPPC9-213ENST00000522504 AMIGO3Q86WK7 504 aa21.36■■□□□ 1.01
TRAPPC9-213ENST00000522504 EMILIN1Q9Y6C2 1016 aa21.36■■□□□ 1.01
TRAPPC9-213ENST00000522504 PCDH11XQ9BZA7 1347 aa21.35■■□□□ 1.01
TRAPPC9-213ENST00000522504 PCDH11YQ9BZA8 1340 aa21.35■■□□□ 1.01
TRAPPC9-213ENST00000522504 MPRIPQ6WCQ1 1025 aa21.35■■□□□ 1.01
TRAPPC9-213ENST00000522504 PALLDQ8WX93 1383 aa21.35■■□□□ 1.01
TRAPPC9-213ENST00000522504 SENP3-EIF4A1A0A087X0R7 540 aa21.34■■□□□ 1.01
TRAPPC9-213ENST00000522504 SMIM5Q71RC9 77 aa21.33■■□□□ 1.01
TRAPPC9-213ENST00000522504 KIF24Q5T7B8 1368 aa21.32■■□□□ 1
TRAPPC9-213ENST00000522504 TOGARAM1Q9Y4F4 1720 aa21.32■■□□□ 1
TRAPPC9-213ENST00000522504 C5P01031 1676 aa21.31■■□□□ 1
TRAPPC9-213ENST00000522504 KIF20BQ96Q89 1820 aa21.31■■□□□ 1
TRAPPC9-213ENST00000522504 NSD3Q9BZ95 1437 aa21.3■■□□□ 1
TRAPPC9-213ENST00000522504 PIGBQ92521 554 aa21.3■■□□□ 1
TRAPPC9-213ENST00000522504 NCAPD2Q15021 1401 aa21.29■■□□□ 1
TRAPPC9-213ENST00000522504 PPM1GO15355 546 aaPredicted RBP21.28■■□□□ 1
TRAPPC9-213ENST00000522504 CDCA8Q53HL2 280 aa21.28■■□□□ 1
TRAPPC9-213ENST00000522504 GRIN3BO60391 1043 aa21.27■■□□□ 1
TRAPPC9-213ENST00000522504 GIGYF1O75420 1035 aaPredicted RBP21.27■■□□□ 1
TRAPPC9-213ENST00000522504 NKX1-1Q15270 411 aaPredicted RBP21.27■■□□□ 1
TRAPPC9-213ENST00000522504 TAF1LQ8IZX4 1826 aa21.27■□□□□ 0.99
TRAPPC9-213ENST00000522504 FLAD1Q8NFF5 587 aa21.26■□□□□ 0.99
TRAPPC9-213ENST00000522504 CD2APQ9Y5K6 639 aa21.26■□□□□ 0.99
TRAPPC9-213ENST00000522504 C4BP0C0L5 1744 aa21.26■□□□□ 0.99
TRAPPC9-213ENST00000522504 PKD1L3Q7Z443 1732 aa21.26■□□□□ 0.99
TRAPPC9-213ENST00000522504 SMARCC1Q92922 1105 aaPredicted RBP21.25■□□□□ 0.99
TRAPPC9-213ENST00000522504 EYA1Q99502 592 aa21.25■□□□□ 0.99
TRAPPC9-213ENST00000522504 PHF14O94880 888 aa21.24■□□□□ 0.99
TRAPPC9-213ENST00000522504 LINC00116Q8NCU8 138 aa21.24■□□□□ 0.99
TRAPPC9-213ENST00000522504 AK7Q96M32 723 aa21.24■□□□□ 0.99
TRAPPC9-213ENST00000522504 ITGB4P16144 1822 aa21.24■□□□□ 0.99
TRAPPC9-213ENST00000522504 WASHC2AQ641Q2 1341 aa21.24■□□□□ 0.99
TRAPPC9-213ENST00000522504 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.23■□□□□ 0.99
TRAPPC9-213ENST00000522504 LOC102724428A0A0B4J2F2 783 aa21.22■□□□□ 0.99
TRAPPC9-213ENST00000522504 SIK1P57059 783 aa21.22■□□□□ 0.99
TRAPPC9-213ENST00000522504 POLKQ9UBT6 870 aa21.22■□□□□ 0.99
TRAPPC9-213ENST00000522504 ASAP1Q9ULH1 1129 aa21.22■□□□□ 0.99
TRAPPC9-213ENST00000522504 SPG7Q9UQ90 795 aa21.22■□□□□ 0.99
TRAPPC9-213ENST00000522504 ITPK1Q13572 414 aa21.21■□□□□ 0.99
TRAPPC9-213ENST00000522504 WWC3Q9ULE0 1092 aa21.21■□□□□ 0.99
TRAPPC9-213ENST00000522504 ANKRD26Q9UPS8 1709 aa21.21■□□□□ 0.99
TRAPPC9-213ENST00000522504 ATP10DQ9P241 1426 aa21.21■□□□□ 0.99
TRAPPC9-213ENST00000522504 MAP2P11137 1827 aaKnown RBP21.2■□□□□ 0.98
TRAPPC9-213ENST00000522504 PHKG2P15735 406 aa21.19■□□□□ 0.98
TRAPPC9-213ENST00000522504 TRIM26Q12899 539 aaPredicted RBP21.19■□□□□ 0.98
TRAPPC9-213ENST00000522504 UBR3Q6ZT12 1888 aa21.19■□□□□ 0.98
TRAPPC9-213ENST00000522504 HMGB2P26583 209 aaKnown RBP21.18■□□□□ 0.98
TRAPPC9-213ENST00000522504 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.18■□□□□ 0.98
TRAPPC9-213ENST00000522504 TMOD3Q9NYL9 352 aa21.18■□□□□ 0.98
TRAPPC9-213ENST00000522504 SSFA2P28290 1259 aa21.17■□□□□ 0.98
TRAPPC9-213ENST00000522504 TNNT2P45379 298 aaPredicted RBP21.17■□□□□ 0.98
TRAPPC9-213ENST00000522504 EIF4A2Q14240 407 aaKnown RBP21.17■□□□□ 0.98
TRAPPC9-213ENST00000522504 ATG3Q9NT62 314 aa21.17■□□□□ 0.98
TRAPPC9-213ENST00000522504 IGSF1Q8N6C5 1336 aa21.17■□□□□ 0.98
TRAPPC9-213ENST00000522504 ADCY9O60503 1353 aa21.16■□□□□ 0.98
TRAPPC9-213ENST00000522504 GNPATO15228 680 aa21.15■□□□□ 0.98
TRAPPC9-213ENST00000522504 IFNL2Q8IZJ0 200 aa21.15■□□□□ 0.98
TRAPPC9-213ENST00000522504 ATP6V1AP38606 617 aa21.14■□□□□ 0.97
TRAPPC9-213ENST00000522504 SLC4A9Q96Q91 983 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms