RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 CRB1P82279 1406 aa17.21■□□□□ 0.34
CPNE3-205ENST00000522240 AFF2P51816 1311 aa17.21■□□□□ 0.34
CPNE3-205ENST00000522240 ZNF521Q96K83 1311 aa17.21■□□□□ 0.34
CPNE3-205ENST00000522240 CSB-PGBD3P0DP91 1061 aa17.2■□□□□ 0.34
CPNE3-205ENST00000522240 TMPOP42166 694 aaKnown RBP17.2■□□□□ 0.34
CPNE3-205ENST00000522240 PKD1L3Q7Z443 1732 aa17.2■□□□□ 0.34
CPNE3-205ENST00000522240 DLG5Q8TDM6 1919 aa17.19■□□□□ 0.34
CPNE3-205ENST00000522240 NFE2L2Q16236 605 aa17.19■□□□□ 0.34
CPNE3-205ENST00000522240 WNK3Q9BYP7 1800 aa17.19■□□□□ 0.34
CPNE3-205ENST00000522240 USHBP1Q8N6Y0 703 aa17.18■□□□□ 0.34
CPNE3-205ENST00000522240 PHACTR3Q96KR7 559 aa17.18■□□□□ 0.34
CPNE3-205ENST00000522240 NLRP2Q9NX02 1062 aa17.18■□□□□ 0.34
CPNE3-205ENST00000522240 BTG4Q9NY30 223 aa17.18■□□□□ 0.34
CPNE3-205ENST00000522240 ADAMTS2O95450 1211 aa17.17■□□□□ 0.34
CPNE3-205ENST00000522240 RBM6P78332 1123 aaKnown RBP17.17■□□□□ 0.34
CPNE3-205ENST00000522240 PDE3BQ13370 1112 aa17.17■□□□□ 0.34
CPNE3-205ENST00000522240 CARD10Q9BWT7 1032 aa17.17■□□□□ 0.34
CPNE3-205ENST00000522240 MEGF6O75095 1541 aa17.16■□□□□ 0.34
CPNE3-205ENST00000522240 LMOD3Q0VAK6 560 aa17.16■□□□□ 0.34
CPNE3-205ENST00000522240 GAS2L2Q8NHY3 880 aa17.16■□□□□ 0.34
CPNE3-205ENST00000522240 LRRC37A3O60309 1634 aa17.16■□□□□ 0.34
CPNE3-205ENST00000522240 OVOS2A0A0G2JMS6 1433 aa17.15■□□□□ 0.34
CPNE3-205ENST00000522240 EVA1CP58658 441 aa17.15■□□□□ 0.34
CPNE3-205ENST00000522240 TOM1L2Q6ZVM7 507 aa17.15■□□□□ 0.34
CPNE3-205ENST00000522240 QTRT2Q9H974 415 aaKnown RBP17.15■□□□□ 0.34
CPNE3-205ENST00000522240 RRP7AQ9Y3A4 280 aaKnown RBP17.15■□□□□ 0.34
CPNE3-205ENST00000522240 LARP1Q6PKG0 1096 aaKnown RBP17.14■□□□□ 0.33
CPNE3-205ENST00000522240 WWC1Q8IX03 1113 aa17.14■□□□□ 0.33
CPNE3-205ENST00000522240 RAPGEF4Q8WZA2 1011 aa17.14■□□□□ 0.33
CPNE3-205ENST00000522240 C8orf37Q96NL8 207 aa17.14■□□□□ 0.33
CPNE3-205ENST00000522240 STRN4Q9NRL3 753 aa17.14■□□□□ 0.33
CPNE3-205ENST00000522240 SENP3-EIF4A1A0A087X0R7 540 aa17.13■□□□□ 0.33
CPNE3-205ENST00000522240 RIPK4P57078 832 aa17.13■□□□□ 0.33
CPNE3-205ENST00000522240 AMOTQ4VCS5 1084 aa17.13■□□□□ 0.33
CPNE3-205ENST00000522240 NGLY1Q96IV0 654 aa17.13■□□□□ 0.33
CPNE3-205ENST00000522240 SALL2Q9Y467 1007 aaPredicted RBP17.13■□□□□ 0.33
CPNE3-205ENST00000522240 DISP2A7MBM2 1401 aa17.13■□□□□ 0.33
CPNE3-205ENST00000522240 TATP17735 454 aaPredicted RBP17.12■□□□□ 0.33
CPNE3-205ENST00000522240 PLEKHO1Q53GL0 409 aaPredicted RBP17.12■□□□□ 0.33
CPNE3-205ENST00000522240 WDR63Q8IWG1 891 aa17.12■□□□□ 0.33
CPNE3-205ENST00000522240 FNBP4Q8N3X1 1017 aaPredicted RBP17.12■□□□□ 0.33
CPNE3-205ENST00000522240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.12■□□□□ 0.332e-6■■□□□ 12.1
CPNE3-205ENST00000522240 TRIM35Q9UPQ4 493 aa17.12■□□□□ 0.33
CPNE3-205ENST00000522240 MAP3K5Q99683 1374 aa17.12■□□□□ 0.33
CPNE3-205ENST00000522240 SRCAPQ6ZRS2 3230 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 ADAMTS7Q9UKP4 1686 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 GOLGA2Q08379 1002 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 MTHFSDQ2M296 383 aaKnown RBP17.11■□□□□ 0.33
CPNE3-205ENST00000522240 IL16Q14005 1332 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 RGS12O14924 1447 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 BCL9LQ86UU0 1499 aa17.11■□□□□ 0.33
CPNE3-205ENST00000522240 SHANK3Q9BYB0 1731 aa17.1■□□□□ 0.33
CPNE3-205ENST00000522240 HTATSF1O43719 755 aaKnown RBP17.1■□□□□ 0.33
CPNE3-205ENST00000522240 CALD1Q05682 793 aaKnown RBP17.09■□□□□ 0.33
CPNE3-205ENST00000522240 UNC5CLQ8IV45 518 aa17.09■□□□□ 0.33
CPNE3-205ENST00000522240 E9PSI1 815 aa17.08■□□□□ 0.32
CPNE3-205ENST00000522240 IL2RBP14784 551 aa17.08■□□□□ 0.32
CPNE3-205ENST00000522240 SPG7Q9UQ90 795 aa17.08■□□□□ 0.32
CPNE3-205ENST00000522240 THRAP3Q9Y2W1 955 aaKnown RBP17.08■□□□□ 0.32
CPNE3-205ENST00000522240 SPATA31A1Q5TZJ5 1347 aa17.07■□□□□ 0.32
CPNE3-205ENST00000522240 SPATA31A5Q5VU36 1347 aa17.07■□□□□ 0.32
CPNE3-205ENST00000522240 SPATA31A7Q8IWB4 1347 aa17.07■□□□□ 0.32
CPNE3-205ENST00000522240 AKAP4Q5JQC9 854 aa17.07■□□□□ 0.32
CPNE3-205ENST00000522240 ZNF530Q6P9A1 599 aaPredicted RBP17.07■□□□□ 0.32
CPNE3-205ENST00000522240 VIRMAQ69YN4 1812 aaKnown RBP17.06■□□□□ 0.32
CPNE3-205ENST00000522240 GNAT3A8MTJ3 354 aa17.06■□□□□ 0.32
CPNE3-205ENST00000522240 SLFN5Q08AF3 891 aa17.06■□□□□ 0.32
CPNE3-205ENST00000522240 VPS72Q15906 364 aa17.06■□□□□ 0.32
CPNE3-205ENST00000522240 RNF39Q9H2S5 420 aa17.06■□□□□ 0.32
CPNE3-205ENST00000522240 TRPC5Q9UL62 973 aaPredicted RBP17.06■□□□□ 0.32
CPNE3-205ENST00000522240 TNS2Q63HR2 1409 aa17.05■□□□□ 0.32
CPNE3-205ENST00000522240 C1orf141Q5JVX7 400 aa17.05■□□□□ 0.32
CPNE3-205ENST00000522240 TRMT2AQ8IZ69 625 aaKnown RBP17.05■□□□□ 0.32
CPNE3-205ENST00000522240 RTF1Q92541 710 aaKnown RBP17.05■□□□□ 0.32
CPNE3-205ENST00000522240 CDCA7Q9BWT1 371 aaPredicted RBP17.05■□□□□ 0.32
CPNE3-205ENST00000522240 SPINK5Q9NQ38 1064 aaPredicted RBP17.05■□□□□ 0.32
CPNE3-205ENST00000522240 USP21Q9UK80 565 aa17.05■□□□□ 0.32
CPNE3-205ENST00000522240 CEMIPQ8WUJ3 1361 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 PCDH11XQ9BZA7 1347 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 PCDH11YQ9BZA8 1340 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 CDCA7LQ96GN5 454 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 SCN11AQ9UI33 1791 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 MRC1P22897 1456 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 ATRNO75882 1429 aa17.04■□□□□ 0.32
CPNE3-205ENST00000522240 DUSP27Q5VZP5 1158 aa17.03■□□□□ 0.32
CPNE3-205ENST00000522240 BARGINQ6ZT62 677 aa17.03■□□□□ 0.32
CPNE3-205ENST00000522240 MYH16Q9H6N6 1097 aa17.03■□□□□ 0.32
CPNE3-205ENST00000522240 THSD7AQ9UPZ6 1657 aa17.03■□□□□ 0.32
CPNE3-205ENST00000522240 SPDYE4A6NLX3 237 aa17.02■□□□□ 0.32
CPNE3-205ENST00000522240 ZCRB1Q8TBF4 217 aaKnown RBP17.02■□□□□ 0.32
CPNE3-205ENST00000522240 IFT57Q9NWB7 429 aa17.02■□□□□ 0.32
CPNE3-205ENST00000522240 SIPA1L3O60292 1781 aaPredicted RBP17.02■□□□□ 0.31
CPNE3-205ENST00000522240 GLI3P10071 1580 aa17.02■□□□□ 0.31
CPNE3-205ENST00000522240 HSP90AB1P08238 724 aaKnown RBP17.01■□□□□ 0.31
CPNE3-205ENST00000522240 PHKG2P15735 406 aa17.01■□□□□ 0.31
CPNE3-205ENST00000522240 IFNL2Q8IZJ0 200 aa17.01■□□□□ 0.31
CPNE3-205ENST00000522240 USP35Q9P2H5 1018 aa17.01■□□□□ 0.31
CPNE3-205ENST00000522240 KDM6AO15550 1401 aaPredicted RBP17■□□□□ 0.31
CPNE3-205ENST00000522240 CAPN15O75808 1086 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms