RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PGPEP1Q9NXJ5 209 aa12.45□□□□□ -0.42
SDCBP-208ENST00000520228 NOD1Q9Y239 953 aa12.45□□□□□ -0.42
SDCBP-208ENST00000520228 ATP5J2-PTCD1G3V325 749 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 TIMP2P16035 220 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 ADD1P35611 737 aaKnown RBP12.44□□□□□ -0.42
SDCBP-208ENST00000520228 MYT1Q01538 1121 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 ITPKCQ96DU7 683 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 SIRT1Q96EB6 747 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 OSBPL3Q9H4L5 887 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 CYLDQ9NQC7 956 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 PCDHGA11Q9Y5H2 935 aa12.44□□□□□ -0.42
SDCBP-208ENST00000520228 AVPP01185 164 aa12.42□□□□□ -0.42
SDCBP-208ENST00000520228 WDR4P57081 412 aaKnown RBP12.42□□□□□ -0.42
SDCBP-208ENST00000520228 CLDN10P78369 228 aa12.42□□□□□ -0.42
SDCBP-208ENST00000520228 CDCA8Q53HL2 280 aa12.42□□□□□ -0.42
SDCBP-208ENST00000520228 TRIM52Q96A61 297 aa12.42□□□□□ -0.42
SDCBP-208ENST00000520228 NRG2O14511 850 aaPredicted RBP12.41□□□□□ -0.42
SDCBP-208ENST00000520228 ZBTB7BO15156 539 aaPredicted RBP12.41□□□□□ -0.42
SDCBP-208ENST00000520228 GFRA3O60609 400 aa12.41□□□□□ -0.42
SDCBP-208ENST00000520228 ATG7O95352 703 aa12.41□□□□□ -0.42
SDCBP-208ENST00000520228 ZIC2O95409 532 aaPredicted RBP12.41□□□□□ -0.42
SDCBP-208ENST00000520228 Q6ZVU0 165 aa12.41□□□□□ -0.42
SDCBP-208ENST00000520228 TRIM50Q86XT4 487 aa12.41□□□□□ -0.42
SDCBP-208ENST00000520228 ZFAND3Q9H8U3 227 aa12.41□□□□□ -0.42
SDCBP-208ENST00000520228 BAZ1AQ9NRL2 1556 aaPredicted RBP12.41□□□□□ -0.42
SDCBP-208ENST00000520228 FAM196BA6NMK8 535 aa12.4□□□□□ -0.42
SDCBP-208ENST00000520228 MYCP01106 439 aaPredicted RBP12.4□□□□□ -0.42
SDCBP-208ENST00000520228 CRTC2Q53ET0 693 aaPredicted RBP12.4□□□□□ -0.42
SDCBP-208ENST00000520228 NCAPD3P42695 1498 aa12.4□□□□□ -0.43
SDCBP-208ENST00000520228 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.43
SDCBP-208ENST00000520228 DKK1O94907 266 aa12.39□□□□□ -0.43
SDCBP-208ENST00000520228 GTF2IP78347 998 aa12.39□□□□□ -0.43
SDCBP-208ENST00000520228 PTK7Q13308 1070 aa12.39□□□□□ -0.43
SDCBP-208ENST00000520228 OGFOD1Q8N543 542 aa12.39□□□□□ -0.43
SDCBP-208ENST00000520228 KIAA1024Q9UPX6 916 aa12.39□□□□□ -0.43
SDCBP-208ENST00000520228 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
SDCBP-208ENST00000520228 FAM187AA6NFU0 413 aa12.38□□□□□ -0.43
SDCBP-208ENST00000520228 RASA1P20936 1047 aa12.38□□□□□ -0.43
SDCBP-208ENST00000520228 ATP1A2P50993 1020 aa12.38□□□□□ -0.43
SDCBP-208ENST00000520228 KDF1Q8NAX2 398 aaPredicted RBP12.38□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L15C9J2P7 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L10C9JJH3 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L13C9JLJ4 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L12C9JPN9 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L11C9JVI0 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L21D6R901 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L18D6R9N7 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L22D6RA61 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L17D6RBQ6 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L19D6RCP7 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L20D6RJB6 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 DGAT1O75907 488 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 USP17L24Q0WX57 530 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 CBLBQ13191 982 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 ELOAQ14241 798 aaKnown RBP12.37□□□□□ -0.43
SDCBP-208ENST00000520228 LARGE2Q8N3Y3 721 aa12.37□□□□□ -0.43
SDCBP-208ENST00000520228 DNAAF2Q9NVR5 837 aaKnown RBP12.37□□□□□ -0.43
SDCBP-208ENST00000520228 LAPTM4AQ15012 233 aa12.36□□□□□ -0.43
SDCBP-208ENST00000520228 SIX5Q8N196 739 aa12.36□□□□□ -0.43
SDCBP-208ENST00000520228 MROH2BQ7Z745 1585 aa12.35□□□□□ -0.43
SDCBP-208ENST00000520228 ADH1AP07327 375 aa12.35□□□□□ -0.43
SDCBP-208ENST00000520228 LARP1Q6PKG0 1096 aaKnown RBP12.35□□□□□ -0.43
SDCBP-208ENST00000520228 ARXQ96QS3 562 aa12.35□□□□□ -0.43
SDCBP-208ENST00000520228 ACIN1Q9UKV3 1341 aaKnown RBP12.35□□□□□ -0.43
SDCBP-208ENST00000520228 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
SDCBP-208ENST00000520228 SMCPP49901 116 aaPredicted RBP12.34□□□□□ -0.43
SDCBP-208ENST00000520228 CYP2U1Q7Z449 544 aa12.34□□□□□ -0.43
SDCBP-208ENST00000520228 MEIOBQ8N635 442 aa12.34□□□□□ -0.43
SDCBP-208ENST00000520228 ZMIZ1Q9ULJ6 1067 aa12.34□□□□□ -0.43
SDCBP-208ENST00000520228 CAPN5O15484 640 aaPredicted RBP12.33□□□□□ -0.44
SDCBP-208ENST00000520228 ESF1Q9H501 851 aaKnown RBP12.33□□□□□ -0.44
SDCBP-208ENST00000520228 SCNN1DP51172 638 aa12.32□□□□□ -0.44
SDCBP-208ENST00000520228 CCDC102BQ68D86 513 aa12.32□□□□□ -0.44
SDCBP-208ENST00000520228 ANKMY2Q8IV38 441 aa12.32□□□□□ -0.44
SDCBP-208ENST00000520228 ZNF594Q96JF6 807 aaPredicted RBP12.32□□□□□ -0.44
SDCBP-208ENST00000520228 NOVA2Q9UNW9 492 aaKnown RBP12.32□□□□□ -0.44
SDCBP-208ENST00000520228 TMEM229AB2RXF0 380 aa12.31□□□□□ -0.44
SDCBP-208ENST00000520228 WASLO00401 505 aaPredicted RBP12.31□□□□□ -0.44
SDCBP-208ENST00000520228 GNRH1P01148 92 aa12.31□□□□□ -0.44
SDCBP-208ENST00000520228 CTC1Q2NKJ3 1217 aa12.31□□□□□ -0.44
SDCBP-208ENST00000520228 PKDCCQ504Y2 493 aa12.31□□□□□ -0.44
SDCBP-208ENST00000520228 CRIPAKQ8N1N5 446 aa12.31□□□□□ -0.44
SDCBP-208ENST00000520228 STAU1O95793 577 aaKnown RBP12.3□□□□□ -0.44
SDCBP-208ENST00000520228 PTGIRP43119 386 aa12.3□□□□□ -0.44
SDCBP-208ENST00000520228 TPCN2Q8NHX9 752 aa12.3□□□□□ -0.44
SDCBP-208ENST00000520228 ETNK1Q9HBU6 452 aa12.3□□□□□ -0.44
SDCBP-208ENST00000520228 DPYDQ12882 1025 aa12.29□□□□□ -0.44
SDCBP-208ENST00000520228 RETREG2Q8NC44 543 aa12.29□□□□□ -0.44
SDCBP-208ENST00000520228 STK32AQ8WU08 396 aa12.29□□□□□ -0.44
SDCBP-208ENST00000520228 AGBL1Q96MI9 1066 aa12.29□□□□□ -0.44
SDCBP-208ENST00000520228 IRX2Q9BZI1 471 aaPredicted RBP12.29□□□□□ -0.44
SDCBP-208ENST00000520228 BAZ1BQ9UIG0 1483 aaKnown RBP12.28□□□□□ -0.44
SDCBP-208ENST00000520228 PSME1Q06323 249 aa12.28□□□□□ -0.44
SDCBP-208ENST00000520228 HMGXB3Q12766 1538 aa12.27□□□□□ -0.44
SDCBP-208ENST00000520228 PEG3Q9GZU2 1588 aa12.27□□□□□ -0.44
SDCBP-208ENST00000520228 TMEM88BA6NKF7 163 aa12.27□□□□□ -0.45
SDCBP-208ENST00000520228 INHAP05111 366 aa12.27□□□□□ -0.45
SDCBP-208ENST00000520228 GDF10P55107 478 aa12.27□□□□□ -0.45
SDCBP-208ENST00000520228 SEC13P55735 322 aa12.26□□□□□ -0.45
SDCBP-208ENST00000520228 FAM69CQ0P6D2 419 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms