RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 SLFNL1Q499Z3 407 aa9.4□□□□□ -0.9
CPNE3-202ENST00000517391 PIK3CDO00329 1044 aa9.39□□□□□ -0.91
CPNE3-202ENST00000517391 ARHGAP9Q9BRR9 750 aa9.39□□□□□ -0.91
CPNE3-202ENST00000517391 PCDHB9Q9Y5E1 797 aa9.39□□□□□ -0.91
CPNE3-202ENST00000517391 USP17L3A6NCW0 530 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 USP17L4A6NCW7 530 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 USP17L5A8MUK1 530 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 USP17L2Q6R6M4 530 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 USP17L1Q7RTZ2 530 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 ZBTB33Q86T24 672 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 PURBQ96QR8 312 aaKnown RBP9.38□□□□□ -0.91
CPNE3-202ENST00000517391 CCDC180Q9P1Z9 1646 aa9.38□□□□□ -0.91
CPNE3-202ENST00000517391 SOBPA7XYQ1 873 aa9.37□□□□□ -0.91
CPNE3-202ENST00000517391 MAP7D1Q3KQU3 841 aa9.37□□□□□ -0.91
CPNE3-202ENST00000517391 ADAM32Q8TC27 787 aa9.37□□□□□ -0.91
CPNE3-202ENST00000517391 FOXJ1Q92949 421 aa9.37□□□□□ -0.91
CPNE3-202ENST00000517391 GZF1Q9H116 711 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-202ENST00000517391 TMEM88BA6NKF7 163 aa9.36□□□□□ -0.91
CPNE3-202ENST00000517391 RNF135Q8IUD6 432 aa9.36□□□□□ -0.91
CPNE3-202ENST00000517391 PHTF2Q8N3S3 785 aa9.36□□□□□ -0.91
CPNE3-202ENST00000517391 OCSTAMPQ9BR26 566 aa9.36□□□□□ -0.91
CPNE3-202ENST00000517391 PPFIA3O75145 1194 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 AGERQ15109 404 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 TMCO4Q5TGY1 634 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 B4GALNT3Q6L9W6 998 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 SH3BP5LQ7L8J4 393 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 DZIP3Q86Y13 1208 aaKnown RBP9.35□□□□□ -0.91
CPNE3-202ENST00000517391 FAM174AQ8TBP5 190 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 KRTAP4-8Q9BYQ9 185 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 CHIC2Q9UKJ5 165 aa9.35□□□□□ -0.91
CPNE3-202ENST00000517391 FAM196BA6NMK8 535 aa9.34□□□□□ -0.91
CPNE3-202ENST00000517391 ATP5J2-PTCD1G3V325 749 aa9.34□□□□□ -0.91
CPNE3-202ENST00000517391 MKRN1Q9UHC7 482 aaKnown RBP9.34□□□□□ -0.91
CPNE3-202ENST00000517391 MAN1A2O60476 641 aa9.33□□□□□ -0.92
CPNE3-202ENST00000517391 LARP1Q6PKG0 1096 aaKnown RBP9.33□□□□□ -0.92
CPNE3-202ENST00000517391 BPHLQ86WA6 291 aaPredicted RBP9.33□□□□□ -0.92
CPNE3-202ENST00000517391 PLPP7Q8NBV4 271 aa9.33□□□□□ -0.92
CPNE3-202ENST00000517391 VARSP26640 1264 aaKnown RBP9.32□□□□□ -0.92
CPNE3-202ENST00000517391 IRS1P35568 1242 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 RANGAP1P46060 587 aaPredicted RBP9.32□□□□□ -0.92
CPNE3-202ENST00000517391 NCOA4Q13772 614 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 C4orf48Q5BLP8 95 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 KANK3Q6NY19 840 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 SH3RF1Q7Z6J0 888 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 DEPDC4Q8N2C3 294 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 TLL2Q9Y6L7 1015 aa9.32□□□□□ -0.92
CPNE3-202ENST00000517391 CARNS1A5YM72 827 aa9.31□□□□□ -0.92
CPNE3-202ENST00000517391 NNTQ13423 1086 aa9.31□□□□□ -0.92
CPNE3-202ENST00000517391 EML3Q32P44 896 aa9.31□□□□□ -0.92
CPNE3-202ENST00000517391 NPM2Q86SE8 214 aaKnown RBP9.31□□□□□ -0.92
CPNE3-202ENST00000517391 NOVA2Q9UNW9 492 aaKnown RBP9.31□□□□□ -0.92
CPNE3-202ENST00000517391 MAGEB6P1A0A0J9YX57 407 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 RASA1P20936 1047 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 RNF20Q5VTR2 975 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 TRIM50Q86XT4 487 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 CCDC125Q86Z20 511 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 CNTNAP3BQ96NU0 1288 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 CDCA7Q9BWT1 371 aaPredicted RBP9.3□□□□□ -0.92
CPNE3-202ENST00000517391 CNTNAP3Q9BZ76 1288 aa9.3□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L15C9J2P7 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L10C9JJH3 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L13C9JLJ4 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L12C9JPN9 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L11C9JVI0 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L21D6R901 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L18D6R9N7 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L22D6RA61 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L17D6RBQ6 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L19D6RCP7 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L20D6RJB6 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 ADH1CP00326 375 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 ATP1A2P50993 1020 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 KRT76Q01546 638 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 USP17L24Q0WX57 530 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 TMEM164Q5U3C3 297 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 MPNDQ8N594 471 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 FAM200AQ8TCP9 573 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 CARD14Q9BXL6 1004 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 ZMIZ1Q9ULJ6 1067 aa9.29□□□□□ -0.92
CPNE3-202ENST00000517391 TIMP2P16035 220 aa9.28□□□□□ -0.92
CPNE3-202ENST00000517391 WDR4P57081 412 aaKnown RBP9.28□□□□□ -0.92
CPNE3-202ENST00000517391 PTK7Q13308 1070 aa9.28□□□□□ -0.92
CPNE3-202ENST00000517391 ARID5BQ14865 1188 aa9.28□□□□□ -0.92
CPNE3-202ENST00000517391 CDV3Q9UKY7 258 aaKnown RBP9.28□□□□□ -0.92
CPNE3-202ENST00000517391 NOD1Q9Y239 953 aa9.28□□□□□ -0.92
CPNE3-202ENST00000517391 ADAM23O75077 832 aa9.27□□□□□ -0.93
CPNE3-202ENST00000517391 ERFEQ4G0M1 354 aa9.27□□□□□ -0.93
CPNE3-202ENST00000517391 CRTC2Q53ET0 693 aaPredicted RBP9.27□□□□□ -0.93
CPNE3-202ENST00000517391 ZNF385CQ66K41 422 aaPredicted RBP9.27□□□□□ -0.93
CPNE3-202ENST00000517391 SVOPQ8N4V2 548 aa9.27□□□□□ -0.93
CPNE3-202ENST00000517391 MFAP1P55081 439 aaKnown RBP9.26□□□□□ -0.93
CPNE3-202ENST00000517391 ANKMY2Q8IV38 441 aa9.26□□□□□ -0.93
CPNE3-202ENST00000517391 STK32AQ8WU08 396 aa9.26□□□□□ -0.93
CPNE3-202ENST00000517391 SLC10A4Q96EP9 437 aa9.26□□□□□ -0.93
CPNE3-202ENST00000517391 DOLKQ9UPQ8 538 aa9.26□□□□□ -0.93
CPNE3-202ENST00000517391 GNEQ9Y223 722 aaKnown RBP9.26□□□□□ -0.93
CPNE3-202ENST00000517391 MARSP56192 900 aaKnown RBP9.25□□□□□ -0.93
CPNE3-202ENST00000517391 NBPF20Q3BBV1 942 aa9.25□□□□□ -0.93
CPNE3-202ENST00000517391 LARGE2Q8N3Y3 721 aa9.25□□□□□ -0.93
CPNE3-202ENST00000517391 OGFOD1Q8N543 542 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms