RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	IPO8	O15397	1037 aa	Known RBP	12.21	□□□□□ -0.45
TPM3-222	ENST00000515609	HSP90AB1	P08238	724 aa	Known RBP	12.21	□□□□□ -0.45
TPM3-222	ENST00000515609	ALDH1L2	Q3SY69	923 aa		12.21	□□□□□ -0.45
TPM3-222	ENST00000515609	AKAP4	Q5JQC9	854 aa		12.21	□□□□□ -0.45
TPM3-222	ENST00000515609	PPP4R2	Q9NY27	417 aa		12.21	□□□□□ -0.45
TPM3-222	ENST00000515609	LAS1L	Q9Y4W2	734 aa	Known RBP	12.21	□□□□□ -0.45
TPM3-222	ENST00000515609	OVOS2	A0A0G2JMS6	1433 aa		12.2	□□□□□ -0.46
TPM3-222	ENST00000515609	CAMTA1	Q9Y6Y1	1673 aa		12.2	□□□□□ -0.46
TPM3-222	ENST00000515609	ZNF853	P0CG23	659 aa		12.2	□□□□□ -0.46
TPM3-222	ENST00000515609	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.2	□□□□□ -0.46
TPM3-222	ENST00000515609	AXIN2	Q9Y2T1	843 aa		12.2	□□□□□ -0.46
TPM3-222	ENST00000515609	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	KIF16B	Q96L93	1317 aa		12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	PDE3A	Q14432	1141 aa		12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	ZNF530	Q6P9A1	599 aa	Predicted RBP	12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	TOM1L2	Q6ZVM7	507 aa		12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	CERK	Q8TCT0	537 aa		12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	CHMP4B	Q9H444	224 aa	Known RBP	12.19	□□□□□ -0.46
TPM3-222	ENST00000515609	COL18A1	P39060	1754 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	PHLPP1	O60346	1717 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	CHL1	O00533	1208 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	RARS	P54136	660 aa	Known RBP	12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	PIP4K2B	P78356	416 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	EXOSC9	Q06265	439 aa	Known RBP	12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	TEF	Q10587	303 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	TAF7	Q15545	349 aa	Predicted RBP	12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	CHRNA2	Q15822	529 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	CARD10	Q9BWT7	1032 aa		12.18	□□□□□ -0.46
TPM3-222	ENST00000515609	USHBP1	Q8N6Y0	703 aa		12.17	□□□□□ -0.46
TPM3-222	ENST00000515609	TSR2	Q969E8	191 aa	Known RBP	12.17	□□□□□ -0.46
TPM3-222	ENST00000515609	DLG5	Q8TDM6	1919 aa		12.17	□□□□□ -0.46
TPM3-222	ENST00000515609	LMO7	Q8WWI1	1683 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	COL14A1	Q05707	1796 aa	Known RBP	12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	BRPF1	P55201	1214 aa	Predicted RBP	12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	MCM10	Q7L590	875 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	IFNL2	Q8IZJ0	200 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	CDCA7	Q9BWT1	371 aa	Predicted RBP	12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	MBIP	Q9NS73	344 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	SMC4	Q9NTJ3	1288 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	TSPYL4	Q9UJ04	414 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	ABCA3	Q99758	1704 aa		12.16	□□□□□ -0.46
TPM3-222	ENST00000515609	COL5A2	P05997	1499 aa	Predicted RBP	12.15	□□□□□ -0.46
TPM3-222	ENST00000515609	CRB1	P82279	1406 aa		12.15	□□□□□ -0.46
TPM3-222	ENST00000515609	TWISTNB	Q3B726	338 aa	Predicted RBP	12.15	□□□□□ -0.46
TPM3-222	ENST00000515609	ZKSCAN2	Q63HK3	967 aa		12.15	□□□□□ -0.46
TPM3-222	ENST00000515609	JCAD	Q9P266	1359 aa		12.15	□□□□□ -0.46
TPM3-222	ENST00000515609	COL16A1	Q07092	1604 aa	Predicted RBP	12.15	□□□□□ -0.47
TPM3-222	ENST00000515609	FAM83G	A6ND36	823 aa		12.14	□□□□□ -0.47
TPM3-222	ENST00000515609	IL2RB	P14784	551 aa		12.14	□□□□□ -0.47
TPM3-222	ENST00000515609	ARHGAP45	Q92619	1136 aa		12.14	□□□□□ -0.47
TPM3-222	ENST00000515609	DCAF5	Q96JK2	942 aa		12.14	□□□□□ -0.47
TPM3-222	ENST00000515609	THUMPD2	Q9BTF0	503 aa	Known RBP	12.14	□□□□□ -0.47
TPM3-222	ENST00000515609	CEMIP	Q8WUJ3	1361 aa		12.14	□□□□□ -0.47
TPM3-222	ENST00000515609	SPATA31A6	Q5VVP1	1343 aa		12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	PCDH11X	Q9BZA7	1347 aa		12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	PCDH11Y	Q9BZA8	1340 aa		12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	DCTN1	Q14203	1278 aa		12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	FTSJ3	Q8IY81	847 aa	Known RBP	12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	BTG4	Q9NY30	223 aa		12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	THRAP3	Q9Y2W1	955 aa	Known RBP	12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	RGPD5	Q99666	1765 aa		12.13	□□□□□ -0.47
TPM3-222	ENST00000515609	HOXB7	P09629	217 aa		12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	IL17RE	Q8NFR9	667 aa		12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	ZCRB1	Q8TBF4	217 aa	Known RBP	12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	FRAT1	Q92837	279 aa	Predicted RBP	12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	CCDC136	Q96JN2	1154 aa		12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	STK31	Q9BXU1	1019 aa		12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	STRN4	Q9NRL3	753 aa		12.12	□□□□□ -0.47
TPM3-222	ENST00000515609	PARP4	Q9UKK3	1724 aa	Known RBP	12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	RNMT	O43148	476 aa	Known RBP	12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	VAMP4	O75379	141 aa		12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	BCAR3	O75815	825 aa		12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	IRX6	P78412	446 aa	Predicted RBP	12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	CCDC30	Q5VVM6	783 aa		12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	API5	Q9BZZ5	524 aa	Known RBP	12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	LRRC37A3	O60309	1634 aa		12.11	□□□□□ -0.47
TPM3-222	ENST00000515609	PHKG2	P15735	406 aa		12.1	□□□□□ -0.47
TPM3-222	ENST00000515609	ATF7IP	Q6VMQ6	1270 aa		12.1	□□□□□ -0.47
TPM3-222	ENST00000515609	DZIP1L	Q8IYY4	767 aa	Known RBP	12.1	□□□□□ -0.47
TPM3-222	ENST00000515609	SSH1	Q8WYL5	1049 aa		12.1	□□□□□ -0.47
TPM3-222	ENST00000515609	RGPD2	P0DJD1	1756 aa		12.1	□□□□□ -0.47
TPM3-222	ENST00000515609	BTBD11	A6QL63	1104 aa		12.09	□□□□□ -0.47
TPM3-222	ENST00000515609	PTPRC	P08575	1304 aa		12.09	□□□□□ -0.47
TPM3-222	ENST00000515609	ERVV-2	B6SEH9	535 aa		12.08	□□□□□ -0.48
TPM3-222	ENST00000515609	PLIN1	O60240	522 aa		12.08	□□□□□ -0.48
TPM3-222	ENST00000515609	LARP1	Q6PKG0	1096 aa	Known RBP	12.08	□□□□□ -0.48
TPM3-222	ENST00000515609	MPRIP	Q6WCQ1	1025 aa		12.08	□□□□□ -0.48
TPM3-222	ENST00000515609	DDX19B	Q9UMR2	479 aa		12.08	□□□□□ -0.48
TPM3-222	ENST00000515609	PKD1L3	Q7Z443	1732 aa		12.08	□□□□□ -0.48
TPM3-222	ENST00000515609	MEGF6	O75095	1541 aa		12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	NUTM2E	B1AL46	878 aa	Predicted RBP	12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	ADAMTS2	O95450	1211 aa		12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	C8orf58	Q8NAV2	365 aa		12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	SLC52A2	Q9HAB3	445 aa		12.07	□□□□□ -0.48
TPM3-222	ENST00000515609	NWD2	Q9ULI1	1742 aa		12.06	□□□□□ -0.48
TPM3-222	ENST00000515609	EXOC5	O00471	708 aa		12.06	□□□□□ -0.48
TPM3-222	ENST00000515609	ELL2	O00472	640 aa	Predicted RBP	12.06	□□□□□ -0.48
TPM3-222	ENST00000515609	CABP4	P57796	275 aa		12.06	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms