RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 STK32BQ9NY57 414 aa24.18■■□□□ 1.46
DDX41-217ENST00000515562 HSP90AB2PQ58FF8 381 aa24.17■■□□□ 1.46
DDX41-217ENST00000515562 ZCRB1Q8TBF4 217 aaKnown RBP24.17■■□□□ 1.46
DDX41-217ENST00000515562 PAPPAQ13219 1627 aa24.17■■□□□ 1.46
DDX41-217ENST00000515562 KAT6BQ8WYB5 2073 aa24.16■■□□□ 1.46
DDX41-217ENST00000515562 RAPGEF4Q8WZA2 1011 aa24.16■■□□□ 1.46
DDX41-217ENST00000515562 USHBP1Q8N6Y0 703 aa24.14■■□□□ 1.45
DDX41-217ENST00000515562 EMILIN1Q9Y6C2 1016 aa24.14■■□□□ 1.45
DDX41-217ENST00000515562 SLC15A2Q16348 729 aa24.13■■□□□ 1.45
DDX41-217ENST00000515562 TATP17735 454 aaPredicted RBP24.12■■□□□ 1.45
DDX41-217ENST00000515562 PPP1R1BQ9UD71 204 aaPredicted RBP24.12■■□□□ 1.45
DDX41-217ENST00000515562 MAP2P11137 1827 aaKnown RBP24.11■■□□□ 1.45
DDX41-217ENST00000515562 NCAPD2Q15021 1401 aa24.1■■□□□ 1.45
DDX41-217ENST00000515562 PPM1GO15355 546 aaPredicted RBP24.1■■□□□ 1.45
DDX41-217ENST00000515562 SYTL4Q96C24 671 aaPredicted RBP24.1■■□□□ 1.45
DDX41-217ENST00000515562 PCDH11XQ9BZA7 1347 aa24.1■■□□□ 1.45
DDX41-217ENST00000515562 PCDH11YQ9BZA8 1340 aa24.1■■□□□ 1.45
DDX41-217ENST00000515562 SLC27A3Q5K4L6 730 aa24.09■■□□□ 1.45
DDX41-217ENST00000515562 WASHC2AQ641Q2 1341 aa24.09■■□□□ 1.45
DDX41-217ENST00000515562 NSD2O96028 1365 aa24.08■■□□□ 1.45
DDX41-217ENST00000515562 PKD1L3Q7Z443 1732 aa24.08■■□□□ 1.45
DDX41-217ENST00000515562 PRIM1P49642 420 aaKnown RBP24.08■■□□□ 1.45
DDX41-217ENST00000515562 LY75O60449 1722 aa24.07■■□□□ 1.44
DDX41-217ENST00000515562 PDGFDQ9GZP0 370 aaPredicted RBP24.07■■□□□ 1.44
DDX41-217ENST00000515562 ZBTB7AO95365 584 aa24.05■■□□□ 1.44
DDX41-217ENST00000515562 PANK3Q9H999 370 aa24.05■■□□□ 1.44
DDX41-217ENST00000515562 LRRC4BQ9NT99 713 aa24.05■■□□□ 1.44
DDX41-217ENST00000515562 POLKQ9UBT6 870 aa24.05■■□□□ 1.44
DDX41-217ENST00000515562 QSER1Q2KHR3 1735 aa24.04■■□□□ 1.44
DDX41-217ENST00000515562 MTFR1LQ9H019 292 aa24.03■■□□□ 1.44
DDX41-217ENST00000515562 TNNT2P45379 298 aaPredicted RBP24.01■■□□□ 1.43
DDX41-217ENST00000515562 ZNF827Q17R98 1081 aa24.01■■□□□ 1.43
DDX41-217ENST00000515562 PTGER2P43116 358 aa24■■□□□ 1.43
DDX41-217ENST00000515562 TOGARAM1Q9Y4F4 1720 aa23.99■■□□□ 1.43
DDX41-217ENST00000515562 AKT1S1Q96B36 256 aa23.99■■□□□ 1.43
DDX41-217ENST00000515562 PLEKHG2Q9H7P9 1386 aa23.99■■□□□ 1.43
DDX41-217ENST00000515562 CYP27B1O15528 508 aa23.98■■□□□ 1.43
DDX41-217ENST00000515562 EYA1Q99502 592 aa23.98■■□□□ 1.43
DDX41-217ENST00000515562 SPG7Q9UQ90 795 aa23.98■■□□□ 1.43
DDX41-217ENST00000515562 ATF5Q9Y2D1 282 aaPredicted RBP23.98■■□□□ 1.43
DDX41-217ENST00000515562 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.97■■□□□ 1.43
DDX41-217ENST00000515562 CCNL1Q9UK58 526 aaPredicted RBP23.97■■□□□ 1.43
DDX41-217ENST00000515562 TUBGCP6Q96RT7 1819 aa23.96■■□□□ 1.43
DDX41-217ENST00000515562 EIF4A2Q14240 407 aaKnown RBP23.96■■□□□ 1.43
DDX41-217ENST00000515562 KNSTRNQ9Y448 316 aa23.95■■□□□ 1.42
DDX41-217ENST00000515562 ITGB4P16144 1822 aa23.95■■□□□ 1.42
DDX41-217ENST00000515562 HMGB2P26583 209 aaKnown RBP23.94■■□□□ 1.42
DDX41-217ENST00000515562 C5P01031 1676 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 KIF7Q2M1P5 1343 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 DCAF8L1A6NGE4 600 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 KCNQ4P56696 695 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 NKX1-1Q15270 411 aaPredicted RBP23.93■■□□□ 1.42
DDX41-217ENST00000515562 MORC1Q86VD1 984 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 SLC16A10Q8TF71 515 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 SGIP1Q9BQI5 828 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 TFCP2L1Q9NZI6 479 aa23.93■■□□□ 1.42
DDX41-217ENST00000515562 PALLDQ8WX93 1383 aa23.92■■□□□ 1.42
DDX41-217ENST00000515562 PNPLA7Q6ZV29 1317 aa23.92■■□□□ 1.42
DDX41-217ENST00000515562 IGSF1Q8N6C5 1336 aa23.92■■□□□ 1.42
DDX41-217ENST00000515562 MPRIPQ6WCQ1 1025 aa23.91■■□□□ 1.42
DDX41-217ENST00000515562 SMARCC1Q92922 1105 aaPredicted RBP23.9■■□□□ 1.42
DDX41-217ENST00000515562 COL24A1Q17RW2 1714 aa23.9■■□□□ 1.42
DDX41-217ENST00000515562 IFNL2Q8IZJ0 200 aa23.88■■□□□ 1.41
DDX41-217ENST00000515562 ARXQ96QS3 562 aa23.88■■□□□ 1.41
DDX41-217ENST00000515562 TAF1LQ8IZX4 1826 aa23.88■■□□□ 1.41
DDX41-217ENST00000515562 PHKG2P15735 406 aa23.87■■□□□ 1.41
DDX41-217ENST00000515562 FHDC1Q9C0D6 1143 aaPredicted RBP23.87■■□□□ 1.41
DDX41-217ENST00000515562 MAP3K5Q99683 1374 aa23.87■■□□□ 1.41
DDX41-217ENST00000515562 AMER1Q5JTC6 1135 aaPredicted RBP23.86■■□□□ 1.41
DDX41-217ENST00000515562 PIGBQ92521 554 aa23.85■■□□□ 1.41
DDX41-217ENST00000515562 POLD1P28340 1107 aa23.84■■□□□ 1.41
DDX41-217ENST00000515562 SYT17Q9BSW7 474 aa23.84■■□□□ 1.41
DDX41-217ENST00000515562 TMOD3Q9NYL9 352 aa23.84■■□□□ 1.41
DDX41-217ENST00000515562 C4BP0C0L5 1744 aa23.83■■□□□ 1.41
DDX41-217ENST00000515562 HSP90AB1P08238 724 aaKnown RBP23.81■■□□□ 1.4
DDX41-217ENST00000515562 AMOTQ4VCS5 1084 aa23.8■■□□□ 1.4
DDX41-217ENST00000515562 PLEKHO1Q53GL0 409 aaPredicted RBP23.8■■□□□ 1.4
DDX41-217ENST00000515562 FLAD1Q8NFF5 587 aa23.8■■□□□ 1.4
DDX41-217ENST00000515562 KDRP35968 1356 aa23.79■■□□□ 1.4
DDX41-217ENST00000515562 MSH5O43196 834 aa23.79■■□□□ 1.4
DDX41-217ENST00000515562 COL23A1Q86Y22 540 aaPredicted RBP23.78■■□□□ 1.4
DDX41-217ENST00000515562 DCAF5Q96JK2 942 aa23.78■■□□□ 1.4
DDX41-217ENST00000515562 LOC102724428A0A0B4J2F2 783 aa23.77■■□□□ 1.4
DDX41-217ENST00000515562 YY1P25490 414 aa23.77■■□□□ 1.4
DDX41-217ENST00000515562 SIK1P57059 783 aa23.77■■□□□ 1.4
DDX41-217ENST00000515562 ZNF530Q6P9A1 599 aaPredicted RBP23.77■■□□□ 1.4
DDX41-217ENST00000515562 AK7Q96M32 723 aa23.77■■□□□ 1.4
DDX41-217ENST00000515562 ERVV-2B6SEH9 535 aa23.76■■□□□ 1.39
DDX41-217ENST00000515562 PER1O15534 1290 aaPredicted RBP23.76■■□□□ 1.39
DDX41-217ENST00000515562 IL13P35225 146 aa23.76■■□□□ 1.39
DDX41-217ENST00000515562 AEBP1Q8IUX7 1158 aa23.76■■□□□ 1.39
DDX41-217ENST00000515562 UBR3Q6ZT12 1888 aa23.76■■□□□ 1.39
DDX41-217ENST00000515562 SULT6B1Q6IMI4 303 aa23.75■■□□□ 1.39
DDX41-217ENST00000515562 ASAP1Q9ULH1 1129 aa23.75■■□□□ 1.39
DDX41-217ENST00000515562 NPC1L1Q9UHC9 1359 aa23.75■■□□□ 1.39
DDX41-217ENST00000515562 KDM6AO15550 1401 aaPredicted RBP23.75■■□□□ 1.39
DDX41-217ENST00000515562 ZNF831Q5JPB2 1677 aa23.74■■□□□ 1.39
DDX41-217ENST00000515562 C1orf141Q5JVX7 400 aa23.74■■□□□ 1.39
DDX41-217ENST00000515562 MTHFSP49914 203 aa23.73■■□□□ 1.39
DDX41-217ENST00000515562 ATG3Q9NT62 314 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms