RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 SHANK3Q9BYB0 1731 aa22.24■■□□□ 1.15
LMNA-223ENST00000515459 MAP3K19Q56UN5 1328 aa22.24■■□□□ 1.15
LMNA-223ENST00000515459 TONSLQ96HA7 1378 aa22.24■■□□□ 1.15
LMNA-223ENST00000515459 HOXC9P31274 260 aa22.23■■□□□ 1.15
LMNA-223ENST00000515459 AMPHP49418 695 aa22.23■■□□□ 1.15
LMNA-223ENST00000515459 KCNQ4P56696 695 aa22.23■■□□□ 1.15
LMNA-223ENST00000515459 ZCRB1Q8TBF4 217 aaKnown RBP22.22■■□□□ 1.15
LMNA-223ENST00000515459 C1QTNF8P60827 252 aa22.21■■□□□ 1.15
LMNA-223ENST00000515459 NSD2O96028 1365 aa22.21■■□□□ 1.15
LMNA-223ENST00000515459 SENP3-EIF4A1A0A087X0R7 540 aa22.2■■□□□ 1.14
LMNA-223ENST00000515459 FBLN1P23142 703 aa22.2■■□□□ 1.14
LMNA-223ENST00000515459 MEGF6O75095 1541 aa22.2■■□□□ 1.14
LMNA-223ENST00000515459 SLC24A1O60721 1099 aa22.19■■□□□ 1.14
LMNA-223ENST00000515459 PELP1Q8IZL8 1130 aaKnown RBP22.19■■□□□ 1.14
LMNA-223ENST00000515459 TESK2Q96S53 571 aa22.19■■□□□ 1.14
LMNA-223ENST00000515459 CCNL1Q9UK58 526 aaPredicted RBP22.18■■□□□ 1.14
LMNA-223ENST00000515459 RTL1A6NKG5 1358 aa22.17■■□□□ 1.14
LMNA-223ENST00000515459 ST20-MTHFSA0A0A6YYL1 179 aa22.17■■□□□ 1.14
LMNA-223ENST00000515459 USP47Q96K76 1375 aa22.16■■□□□ 1.14
LMNA-223ENST00000515459 CGNL1Q0VF96 1302 aa22.15■■□□□ 1.14
LMNA-223ENST00000515459 NLGN2Q8NFZ4 835 aa22.15■■□□□ 1.14
LMNA-223ENST00000515459 NBPF6Q5VWK0 638 aa22.14■■□□□ 1.13
LMNA-223ENST00000515459 NBPF4Q96M43 638 aa22.14■■□□□ 1.13
LMNA-223ENST00000515459 MSH5O43196 834 aa22.13■■□□□ 1.13
LMNA-223ENST00000515459 RRS1Q15050 365 aaKnown RBP22.13■■□□□ 1.13
LMNA-223ENST00000515459 SMG6Q86US8 1419 aaKnown RBP22.13■■□□□ 1.13
LMNA-223ENST00000515459 C5P01031 1676 aa22.12■■□□□ 1.13
LMNA-223ENST00000515459 GIGYF1O75420 1035 aaPredicted RBP22.12■■□□□ 1.13
LMNA-223ENST00000515459 COL23A1Q86Y22 540 aaPredicted RBP22.12■■□□□ 1.13
LMNA-223ENST00000515459 RAPGEF4Q8WZA2 1011 aa22.12■■□□□ 1.13
LMNA-223ENST00000515459 USHBP1Q8N6Y0 703 aa22.11■■□□□ 1.13
LMNA-223ENST00000515459 FYB1O15117 783 aa22.1■■□□□ 1.13
LMNA-223ENST00000515459 GGNBP2Q9H3C7 697 aa22.1■■□□□ 1.13
LMNA-223ENST00000515459 GRIN3BO60391 1043 aa22.09■■□□□ 1.13
LMNA-223ENST00000515459 TATP17735 454 aaPredicted RBP22.09■■□□□ 1.13
LMNA-223ENST00000515459 HMGB2P26583 209 aaKnown RBP22.09■■□□□ 1.13
LMNA-223ENST00000515459 YBX3P16989 372 aaKnown RBP eCLIP22.08■■□□□ 1.13
LMNA-223ENST00000515459 TAF1LQ8IZX4 1826 aa22.08■■□□□ 1.12
LMNA-223ENST00000515459 KIF20BQ96Q89 1820 aa22.08■■□□□ 1.12
LMNA-223ENST00000515459 PCDH11XQ9BZA7 1347 aa22.07■■□□□ 1.12
LMNA-223ENST00000515459 PCDH11YQ9BZA8 1340 aa22.07■■□□□ 1.12
LMNA-223ENST00000515459 TMF1P82094 1093 aa22.06■■□□□ 1.12
LMNA-223ENST00000515459 MSL1Q68DK7 614 aa22.06■■□□□ 1.12
LMNA-223ENST00000515459 INSRP06213 1382 aa22.06■■□□□ 1.12
LMNA-223ENST00000515459 GOLGB1Q14789 3259 aaKnown RBP22.06■■□□□ 1.12
LMNA-223ENST00000515459 FLAD1Q8NFF5 587 aa22.05■■□□□ 1.12
LMNA-223ENST00000515459 FLT4P35916 1363 aa22.04■■□□□ 1.12
LMNA-223ENST00000515459 KIF24Q5T7B8 1368 aa22.04■■□□□ 1.12
LMNA-223ENST00000515459 PALLDQ8WX93 1383 aa22.04■■□□□ 1.12
LMNA-223ENST00000515459 HSP90AB2PQ58FF8 381 aa22.04■■□□□ 1.12
LMNA-223ENST00000515459 MPRIPQ6WCQ1 1025 aa22.04■■□□□ 1.12
LMNA-223ENST00000515459 ITGB4P16144 1822 aa22.03■■□□□ 1.12
LMNA-223ENST00000515459 CD2APQ9Y5K6 639 aa22.02■■□□□ 1.12
LMNA-223ENST00000515459 C4BP0C0L5 1744 aa22.01■■□□□ 1.11
LMNA-223ENST00000515459 TOGARAM1Q9Y4F4 1720 aa22.01■■□□□ 1.11
LMNA-223ENST00000515459 CYP27B1O15528 508 aa22■■□□□ 1.11
LMNA-223ENST00000515459 SMARCC1Q92922 1105 aaPredicted RBP22■■□□□ 1.11
LMNA-223ENST00000515459 PKD1L3Q7Z443 1732 aa22■■□□□ 1.11
LMNA-223ENST00000515459 CDCA8Q53HL2 280 aa21.98■■□□□ 1.11
LMNA-223ENST00000515459 AK7Q96M32 723 aa21.98■■□□□ 1.11
LMNA-223ENST00000515459 UBR3Q6ZT12 1888 aa21.97■■□□□ 1.11
LMNA-223ENST00000515459 ATP10DQ9P241 1426 aa21.97■■□□□ 1.11
LMNA-223ENST00000515459 NSD3Q9BZ95 1437 aa21.96■■□□□ 1.11
LMNA-223ENST00000515459 EMILIN1Q9Y6C2 1016 aa21.95■■□□□ 1.1
LMNA-223ENST00000515459 PIGBQ92521 554 aa21.94■■□□□ 1.1
LMNA-223ENST00000515459 NCAPD2Q15021 1401 aa21.93■■□□□ 1.1
LMNA-223ENST00000515459 ANKRD26Q9UPS8 1709 aa21.93■■□□□ 1.1
LMNA-223ENST00000515459 SPG7Q9UQ90 795 aa21.93■■□□□ 1.1
LMNA-223ENST00000515459 MAP2P11137 1827 aaKnown RBP21.92■■□□□ 1.1
LMNA-223ENST00000515459 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.92■■□□□ 1.1
LMNA-223ENST00000515459 PHF14O94880 888 aa21.92■■□□□ 1.1
LMNA-223ENST00000515459 NKX1-1Q15270 411 aaPredicted RBP21.92■■□□□ 1.1
LMNA-223ENST00000515459 AMIGO3Q86WK7 504 aa21.92■■□□□ 1.1
LMNA-223ENST00000515459 CARD14Q9BXL6 1004 aa21.92■■□□□ 1.1
LMNA-223ENST00000515459 GPBP1L1Q9HC44 474 aaPredicted RBP21.92■■□□□ 1.1
LMNA-223ENST00000515459 PPM1GO15355 546 aaPredicted RBP21.91■■□□□ 1.1
LMNA-223ENST00000515459 IGSF1Q8N6C5 1336 aa21.9■■□□□ 1.1
LMNA-223ENST00000515459 SSFA2P28290 1259 aa21.9■■□□□ 1.1
LMNA-223ENST00000515459 ADCY9O60503 1353 aa21.89■■□□□ 1.1
LMNA-223ENST00000515459 LOC102724428A0A0B4J2F2 783 aa21.89■■□□□ 1.09
LMNA-223ENST00000515459 SIK1P57059 783 aa21.89■■□□□ 1.09
LMNA-223ENST00000515459 WASHC2AQ641Q2 1341 aa21.88■■□□□ 1.09
LMNA-223ENST00000515459 SMIM5Q71RC9 77 aa21.88■■□□□ 1.09
LMNA-223ENST00000515459 LINC00116Q8NCU8 138 aa21.88■■□□□ 1.09
LMNA-223ENST00000515459 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.88■■□□□ 1.09
LMNA-223ENST00000515459 TMOD3Q9NYL9 352 aa21.88■■□□□ 1.09
LMNA-223ENST00000515459 EYA1Q99502 592 aa21.86■■□□□ 1.09
LMNA-223ENST00000515459 ZNF526Q8TF50 670 aaPredicted RBP21.85■■□□□ 1.09
LMNA-223ENST00000515459 WWC3Q9ULE0 1092 aa21.85■■□□□ 1.09
LMNA-223ENST00000515459 GNPATO15228 680 aa21.84■■□□□ 1.09
LMNA-223ENST00000515459 ATP6V1AP38606 617 aa21.84■■□□□ 1.09
LMNA-223ENST00000515459 IFNL2Q8IZJ0 200 aa21.84■■□□□ 1.09
LMNA-223ENST00000515459 ASAP1Q9ULH1 1129 aa21.84■■□□□ 1.09
LMNA-223ENST00000515459 PHKG2P15735 406 aa21.83■■□□□ 1.09
LMNA-223ENST00000515459 ITPK1Q13572 414 aa21.83■■□□□ 1.09
LMNA-223ENST00000515459 IFFO2Q5TF58 517 aa21.83■■□□□ 1.09
LMNA-223ENST00000515459 HSPA6P17066 643 aa21.81■■□□□ 1.08
LMNA-223ENST00000515459 ATG3Q9NT62 314 aa21.8■■□□□ 1.08
LMNA-223ENST00000515459 POLKQ9UBT6 870 aa21.8■■□□□ 1.08
LMNA-223ENST00000515459 CEP350Q5VT06 3117 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms