RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PER1O15534 1290 aaPredicted RBP15.72■□□□□ 0.11
VCAN-212ENST00000515397 PRIM1P49642 420 aaKnown RBP15.72■□□□□ 0.11
VCAN-212ENST00000515397 EIF4A2Q14240 407 aaKnown RBP15.72■□□□□ 0.11
VCAN-212ENST00000515397 MAP2P11137 1827 aaKnown RBP15.71■□□□□ 0.1
VCAN-212ENST00000515397 KIF24Q5T7B8 1368 aa15.7■□□□□ 0.1
VCAN-212ENST00000515397 SBF2Q86WG5 1849 aa15.7■□□□□ 0.1
VCAN-212ENST00000515397 FAM208AQ9UK61 1670 aaKnown RBP15.7■□□□□ 0.1
VCAN-212ENST00000515397 BCL9O00512 1426 aa15.69■□□□□ 0.1
VCAN-212ENST00000515397 KCNQ4P56696 695 aa15.69■□□□□ 0.1
VCAN-212ENST00000515397 TXNRD1Q16881 649 aa15.69■□□□□ 0.1
VCAN-212ENST00000515397 NBPF14Q5TI25 921 aa15.69■□□□□ 0.1
VCAN-212ENST00000515397 ANO8Q9HCE9 1232 aaPredicted RBP15.69■□□□□ 0.1
VCAN-212ENST00000515397 CYP27B1O15528 508 aa15.68■□□□□ 0.1
VCAN-212ENST00000515397 PARD3Q8TEW0 1356 aa15.67■□□□□ 0.1
VCAN-212ENST00000515397 NSD2O96028 1365 aa15.66■□□□□ 0.1
VCAN-212ENST00000515397 PDGFDQ9GZP0 370 aaPredicted RBP15.66■□□□□ 0.1
VCAN-212ENST00000515397 MTHFSP49914 203 aa15.65■□□□□ 0.1
VCAN-212ENST00000515397 AEBP1Q8IUX7 1158 aa15.65■□□□□ 0.1
VCAN-212ENST00000515397 LRRC4BQ9NT99 713 aa15.65■□□□□ 0.1
VCAN-212ENST00000515397 MPRIPQ6WCQ1 1025 aa15.63■□□□□ 0.09
VCAN-212ENST00000515397 SPG7Q9UQ90 795 aa15.62■□□□□ 0.09
VCAN-212ENST00000515397 ANKRD26Q9UPS8 1709 aa15.62■□□□□ 0.09
VCAN-212ENST00000515397 PCDH11XQ9BZA7 1347 aa15.62■□□□□ 0.09
VCAN-212ENST00000515397 PCDH11YQ9BZA8 1340 aa15.62■□□□□ 0.09
VCAN-212ENST00000515397 NUP188Q5SRE5 1749 aa15.61■□□□□ 0.09
VCAN-212ENST00000515397 IL13P35225 146 aa15.61■□□□□ 0.09
VCAN-212ENST00000515397 SULT6B1Q6IMI4 303 aa15.61■□□□□ 0.09
VCAN-212ENST00000515397 STK32BQ9NY57 414 aa15.61■□□□□ 0.09
VCAN-212ENST00000515397 IGSF1Q8N6C5 1336 aa15.61■□□□□ 0.09
VCAN-212ENST00000515397 RREB1Q92766 1687 aa15.6■□□□□ 0.09
VCAN-212ENST00000515397 NHSQ6T4R5 1651 aa15.6■□□□□ 0.09
VCAN-212ENST00000515397 SHANK3Q9BYB0 1731 aa15.6■□□□□ 0.09
VCAN-212ENST00000515397 ZBTB7AO95365 584 aa15.59■□□□□ 0.09
VCAN-212ENST00000515397 HMOX1P09601 288 aa15.59■□□□□ 0.09
VCAN-212ENST00000515397 SLC15A2Q16348 729 aa15.59■□□□□ 0.09
VCAN-212ENST00000515397 ZNF827Q17R98 1081 aa15.59■□□□□ 0.09
VCAN-212ENST00000515397 BTAF1O14981 1849 aa15.59■□□□□ 0.09
VCAN-212ENST00000515397 NCAPD2Q15021 1401 aa15.59■□□□□ 0.09
VCAN-212ENST00000515397 PHKG2P15735 406 aa15.58■□□□□ 0.08
VCAN-212ENST00000515397 PIGBQ92521 554 aa15.58■□□□□ 0.08
VCAN-212ENST00000515397 ATF5Q9Y2D1 282 aaPredicted RBP15.58■□□□□ 0.08
VCAN-212ENST00000515397 IFNL2Q8IZJ0 200 aa15.57■□□□□ 0.08
VCAN-212ENST00000515397 NKX1-1Q15270 411 aaPredicted RBP15.56■□□□□ 0.08
VCAN-212ENST00000515397 PLEKHO1Q53GL0 409 aaPredicted RBP15.56■□□□□ 0.08
VCAN-212ENST00000515397 ZNF530Q6P9A1 599 aaPredicted RBP15.56■□□□□ 0.08
VCAN-212ENST00000515397 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.56■□□□□ 0.082e-7■■■■■ 28.3
VCAN-212ENST00000515397 CCNL1Q9UK58 526 aaPredicted RBP15.56■□□□□ 0.08
VCAN-212ENST00000515397 DOT1LQ8TEK3 1739 aa15.55■□□□□ 0.08
VCAN-212ENST00000515397 DIAPH1O60610 1272 aaKnown RBP15.55■□□□□ 0.08
VCAN-212ENST00000515397 U2SURPO15042 1029 aaKnown RBP15.54■□□□□ 0.08
VCAN-212ENST00000515397 SLC27A3Q5K4L6 730 aa15.54■□□□□ 0.08
VCAN-212ENST00000515397 AKT1S1Q96B36 256 aa15.54■□□□□ 0.08
VCAN-212ENST00000515397 SPON1Q9HCB6 807 aa15.54■□□□□ 0.08
VCAN-212ENST00000515397 ASAP1Q9ULH1 1129 aa15.54■□□□□ 0.08
VCAN-212ENST00000515397 SMIM5Q71RC9 77 aa15.53■□□□□ 0.08
VCAN-212ENST00000515397 TMOD3Q9NYL9 352 aa15.53■□□□□ 0.08
VCAN-212ENST00000515397 NPC1L1Q9UHC9 1359 aa15.52■□□□□ 0.08
VCAN-212ENST00000515397 TFCP2L1Q9NZI6 479 aa15.52■□□□□ 0.08
VCAN-212ENST00000515397 RGPD3A6NKT7 1758 aaPredicted RBP15.52■□□□□ 0.07
VCAN-212ENST00000515397 RGPD4Q7Z3J3 1758 aa15.52■□□□□ 0.07
VCAN-212ENST00000515397 PALLDQ8WX93 1383 aa15.51■□□□□ 0.07
VCAN-212ENST00000515397 PPP2R1AP30153 589 aa15.51■□□□□ 0.07
VCAN-212ENST00000515397 DDX10Q13206 875 aaKnown RBP15.51■□□□□ 0.07
VCAN-212ENST00000515397 AMOTQ4VCS5 1084 aa15.51■□□□□ 0.07
VCAN-212ENST00000515397 PPP1R1BQ9UD71 204 aaPredicted RBP15.51■□□□□ 0.07
VCAN-212ENST00000515397 C1orf141Q5JVX7 400 aa15.5■□□□□ 0.07
VCAN-212ENST00000515397 PKD1L3Q7Z443 1732 aa15.5■□□□□ 0.07
VCAN-212ENST00000515397 MSH5O43196 834 aa15.49■□□□□ 0.07
VCAN-212ENST00000515397 LGR6Q9HBX8 967 aa15.49■□□□□ 0.07
VCAN-212ENST00000515397 ATG3Q9NT62 314 aa15.49■□□□□ 0.07
VCAN-212ENST00000515397 TOGARAM1Q9Y4F4 1720 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 PNPLA7Q6ZV29 1317 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 PTGER2P43116 358 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 CABP4P57796 275 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 MTHFSDQ2M296 383 aaKnown RBP15.48■□□□□ 0.07
VCAN-212ENST00000515397 NFATC2IPQ8NCF5 419 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 SMARCC1Q92922 1105 aaPredicted RBP15.48■□□□□ 0.07
VCAN-212ENST00000515397 DCAF5Q96JK2 942 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 KDRP35968 1356 aa15.48■□□□□ 0.07
VCAN-212ENST00000515397 LOC102724428A0A0B4J2F2 783 aa15.47■□□□□ 0.07
VCAN-212ENST00000515397 SIK1P57059 783 aa15.47■□□□□ 0.07
VCAN-212ENST00000515397 RBM42Q9BTD8 480 aaKnown RBP15.47■□□□□ 0.07
VCAN-212ENST00000515397 LRP5O75197 1615 aa15.46■□□□□ 0.07
VCAN-212ENST00000515397 KDM6AO15550 1401 aaPredicted RBP15.46■□□□□ 0.07
VCAN-212ENST00000515397 ERVV-2B6SEH9 535 aa15.46■□□□□ 0.07
VCAN-212ENST00000515397 HSP90AB1P08238 724 aaKnown RBP15.46■□□□□ 0.07
VCAN-212ENST00000515397 ITPK1Q13572 414 aa15.46■□□□□ 0.07
VCAN-212ENST00000515397 AMIGO3Q86WK7 504 aa15.46■□□□□ 0.07
VCAN-212ENST00000515397 COL23A1Q86Y22 540 aaPredicted RBP15.46■□□□□ 0.07
VCAN-212ENST00000515397 ITGB4P16144 1822 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 ATP6V1AP38606 617 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 LINC00116Q8NCU8 138 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 CFAP53Q96M91 514 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 SLC4A9Q96Q91 983 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 MTFR1LQ9H019 292 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 PAPPAQ13219 1627 aa15.45■□□□□ 0.06
VCAN-212ENST00000515397 COL3A1P02461 1466 aaPredicted RBP15.45■□□□□ 0.06
VCAN-212ENST00000515397 PTCD1O75127 700 aaKnown RBP15.44■□□□□ 0.06
VCAN-212ENST00000515397 PHF14O94880 888 aa15.44■□□□□ 0.06
VCAN-212ENST00000515397 U2AF1L5P0DN76 240 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms