RNA–Protein interactions for RNA: ENST00000514898.1

RUFY3-213, Transcript of RUN and FYVE domain containing 3, human

TSL 4

Gene RUFY3, Length 482 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RUFY3-213	ENST00000514898	KCNQ4	P56696	695 aa		32.83	■■■□□ 2.85
RUFY3-213	ENST00000514898	PRIM1	P49642	420 aa	Known RBP	32.81	■■■□□ 2.84
RUFY3-213	ENST00000514898	MEGF6	O75095	1541 aa		32.8	■■■□□ 2.84
RUFY3-213	ENST00000514898	COG3	Q96JB2	828 aa		32.77	■■■□□ 2.84
RUFY3-213	ENST00000514898	ST20-MTHFS	A0A0A6YYL1	179 aa		32.75	■■■□□ 2.83
RUFY3-213	ENST00000514898	ZCRB1	Q8TBF4	217 aa	Known RBP	32.75	■■■□□ 2.83
RUFY3-213	ENST00000514898	SYTL4	Q96C24	671 aa	Predicted RBP	32.75	■■■□□ 2.83
RUFY3-213	ENST00000514898	TFCP2L1	Q9NZI6	479 aa		32.74	■■■□□ 2.83
RUFY3-213	ENST00000514898	TONSL	Q96HA7	1378 aa		32.73	■■■□□ 2.83
RUFY3-213	ENST00000514898	POLD1	P28340	1107 aa		32.73	■■■□□ 2.83
RUFY3-213	ENST00000514898	GPR162	Q16538	588 aa		32.73	■■■□□ 2.83
RUFY3-213	ENST00000514898	AMPH	P49418	695 aa		32.72	■■■□□ 2.83
RUFY3-213	ENST00000514898	C1QTNF8	P60827	252 aa		32.72	■■■□□ 2.83
RUFY3-213	ENST00000514898	NBPF6	Q5VWK0	638 aa		32.71	■■■□□ 2.83
RUFY3-213	ENST00000514898	NLGN2	Q8NFZ4	835 aa		32.71	■■■□□ 2.83
RUFY3-213	ENST00000514898	NBPF4	Q96M43	638 aa		32.71	■■■□□ 2.83
RUFY3-213	ENST00000514898	RTL1	A6NKG5	1358 aa		32.7	■■■□□ 2.83
RUFY3-213	ENST00000514898	KLHL34	Q8N239	644 aa		32.68	■■■□□ 2.82
RUFY3-213	ENST00000514898	CCNL1	Q9UK58	526 aa	Predicted RBP	32.67	■■■□□ 2.82
RUFY3-213	ENST00000514898	FYB1	O15117	783 aa		32.66	■■■□□ 2.82
RUFY3-213	ENST00000514898	RRS1	Q15050	365 aa	Known RBP	32.66	■■■□□ 2.82
RUFY3-213	ENST00000514898	COL23A1	Q86Y22	540 aa	Predicted RBP	32.64	■■■□□ 2.82
RUFY3-213	ENST00000514898	SENP3-EIF4A1	A0A087X0R7	540 aa		32.63	■■■□□ 2.81
RUFY3-213	ENST00000514898	USHBP1	Q8N6Y0	703 aa		32.63	■■■□□ 2.81
RUFY3-213	ENST00000514898	CGNL1	Q0VF96	1302 aa		32.62	■■■□□ 2.81
RUFY3-213	ENST00000514898	USP47	Q96K76	1375 aa		32.61	■■■□□ 2.81
RUFY3-213	ENST00000514898	SLC24A1	O60721	1099 aa		32.61	■■■□□ 2.81
RUFY3-213	ENST00000514898	GGNBP2	Q9H3C7	697 aa		32.61	■■■□□ 2.81
RUFY3-213	ENST00000514898	YBX3	P16989	372 aa	Known RBP eCLIP	32.6	■■■□□ 2.81
RUFY3-213	ENST00000514898	PELP1	Q8IZL8	1130 aa	Known RBP	32.59	■■■□□ 2.81
RUFY3-213	ENST00000514898	C5	P01031	1676 aa		32.58	■■■□□ 2.81
RUFY3-213	ENST00000514898	TAF1L	Q8IZX4	1826 aa		32.56	■■■□□ 2.8
RUFY3-213	ENST00000514898	HSP90AB2P	Q58FF8	381 aa		32.56	■■■□□ 2.8
RUFY3-213	ENST00000514898	INSR	P06213	1382 aa		32.56	■■■□□ 2.8
RUFY3-213	ENST00000514898	RAPGEF4	Q8WZA2	1011 aa		32.55	■■■□□ 2.8
RUFY3-213	ENST00000514898	CEP350	Q5VT06	3117 aa		32.53	■■■□□ 2.8
RUFY3-213	ENST00000514898	SMG6	Q86US8	1419 aa	Known RBP	32.52	■■■□□ 2.8
RUFY3-213	ENST00000514898	TOGARAM1	Q9Y4F4	1720 aa		32.52	■■■□□ 2.8
RUFY3-213	ENST00000514898	GIGYF1	O75420	1035 aa	Predicted RBP	32.52	■■■□□ 2.8
RUFY3-213	ENST00000514898	TAT	P17735	454 aa	Predicted RBP	32.52	■■■□□ 2.8
RUFY3-213	ENST00000514898	MSL1	Q68DK7	614 aa		32.52	■■■□□ 2.8
RUFY3-213	ENST00000514898	CYP27B1	O15528	508 aa		32.51	■■■□□ 2.79
RUFY3-213	ENST00000514898	MSH5	O43196	834 aa		32.51	■■■□□ 2.79
RUFY3-213	ENST00000514898	KIF20B	Q96Q89	1820 aa		32.51	■■■□□ 2.79
RUFY3-213	ENST00000514898	PCDH11X	Q9BZA7	1347 aa		32.51	■■■□□ 2.79
RUFY3-213	ENST00000514898	PCDH11Y	Q9BZA8	1340 aa		32.51	■■■□□ 2.79
RUFY3-213	ENST00000514898	FLT4	P35916	1363 aa		32.5	■■■□□ 2.79
RUFY3-213	ENST00000514898	KIF24	Q5T7B8	1368 aa		32.5	■■■□□ 2.79
RUFY3-213	ENST00000514898	PALLD	Q8WX93	1383 aa		32.5	■■■□□ 2.79
RUFY3-213	ENST00000514898	GRIN3B	O60391	1043 aa		32.49	■■■□□ 2.79
RUFY3-213	ENST00000514898	ITGB4	P16144	1822 aa		32.49	■■■□□ 2.79
RUFY3-213	ENST00000514898	TMF1	P82094	1093 aa		32.48	■■■□□ 2.79
RUFY3-213	ENST00000514898	AMIGO3	Q86WK7	504 aa		32.47	■■■□□ 2.79
RUFY3-213	ENST00000514898	PKD1L3	Q7Z443	1732 aa		32.46	■■■□□ 2.79
RUFY3-213	ENST00000514898	NCAPD2	Q15021	1401 aa		32.46	■■■□□ 2.79
RUFY3-213	ENST00000514898	C4B	P0C0L5	1744 aa		32.46	■■■□□ 2.79
RUFY3-213	ENST00000514898	MPRIP	Q6WCQ1	1025 aa		32.45	■■■□□ 2.79
RUFY3-213	ENST00000514898	CD2AP	Q9Y5K6	639 aa		32.45	■■■□□ 2.79
RUFY3-213	ENST00000514898	FLAD1	Q8NFF5	587 aa		32.44	■■■□□ 2.78
RUFY3-213	ENST00000514898	CARD14	Q9BXL6	1004 aa		32.44	■■■□□ 2.78
RUFY3-213	ENST00000514898	UBR3	Q6ZT12	1888 aa		32.42	■■■□□ 2.78
RUFY3-213	ENST00000514898	EMILIN1	Q9Y6C2	1016 aa		32.41	■■■□□ 2.78
RUFY3-213	ENST00000514898	MAP2	P11137	1827 aa	Known RBP	32.41	■■■□□ 2.78
RUFY3-213	ENST00000514898	NKX1-1	Q15270	411 aa	Predicted RBP	32.39	■■■□□ 2.78
RUFY3-213	ENST00000514898	PIGB	Q92521	554 aa		32.39	■■■□□ 2.78
RUFY3-213	ENST00000514898	ANKRD26	Q9UPS8	1709 aa		32.38	■■■□□ 2.77
RUFY3-213	ENST00000514898	ATP10D	Q9P241	1426 aa		32.38	■■■□□ 2.77
RUFY3-213	ENST00000514898	HMGB2	P26583	209 aa	Known RBP	32.37	■■■□□ 2.77
RUFY3-213	ENST00000514898	SMIM5	Q71RC9	77 aa		32.37	■■■□□ 2.77
RUFY3-213	ENST00000514898	SMARCC1	Q92922	1105 aa	Predicted RBP	32.37	■■■□□ 2.77
RUFY3-213	ENST00000514898	ADCY9	O60503	1353 aa		32.36	■■■□□ 2.77
RUFY3-213	ENST00000514898	NSD3	Q9BZ95	1437 aa		32.34	■■■□□ 2.77
RUFY3-213	ENST00000514898	CDCA8	Q53HL2	280 aa		32.33	■■■□□ 2.77
RUFY3-213	ENST00000514898	AK7	Q96M32	723 aa		32.33	■■■□□ 2.77
RUFY3-213	ENST00000514898	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.32	■■■□□ 2.76
RUFY3-213	ENST00000514898	LINC00116	Q8NCU8	138 aa		32.31	■■■□□ 2.76
RUFY3-213	ENST00000514898	WASHC2A	Q641Q2	1341 aa		32.3	■■■□□ 2.76
RUFY3-213	ENST00000514898	LOC102724428	A0A0B4J2F2	783 aa		32.28	■■■□□ 2.76
RUFY3-213	ENST00000514898	PHF14	O94880	888 aa		32.28	■■■□□ 2.76
RUFY3-213	ENST00000514898	SIK1	P57059	783 aa		32.28	■■■□□ 2.76
RUFY3-213	ENST00000514898	EYA1	Q99502	592 aa		32.28	■■■□□ 2.76
RUFY3-213	ENST00000514898	SSFA2	P28290	1259 aa		32.27	■■■□□ 2.76
RUFY3-213	ENST00000514898	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.27	■■■□□ 2.76
RUFY3-213	ENST00000514898	SPG7	Q9UQ90	795 aa		32.27	■■■□□ 2.76
RUFY3-213	ENST00000514898	IGSF1	Q8N6C5	1336 aa		32.26	■■■□□ 2.76
RUFY3-213	ENST00000514898	ITPK1	Q13572	414 aa		32.26	■■■□□ 2.75
RUFY3-213	ENST00000514898	ASAP1	Q9ULH1	1129 aa		32.25	■■■□□ 2.75
RUFY3-213	ENST00000514898	PPM1G	O15355	546 aa	Predicted RBP	32.24	■■■□□ 2.75
RUFY3-213	ENST00000514898	GPBP1L1	Q9HC44	474 aa	Predicted RBP	32.22	■■■□□ 2.75
RUFY3-213	ENST00000514898	POLK	Q9UBT6	870 aa		32.22	■■■□□ 2.75
RUFY3-213	ENST00000514898	PHKG2	P15735	406 aa		32.21	■■■□□ 2.75
RUFY3-213	ENST00000514898	TMOD3	Q9NYL9	352 aa		32.21	■■■□□ 2.75
RUFY3-213	ENST00000514898	WWC3	Q9ULE0	1092 aa		32.2	■■■□□ 2.75
RUFY3-213	ENST00000514898	ATG3	Q9NT62	314 aa		32.19	■■■□□ 2.74
RUFY3-213	ENST00000514898	GNPAT	O15228	680 aa		32.17	■■■□□ 2.74
RUFY3-213	ENST00000514898	IFNL2	Q8IZJ0	200 aa		32.17	■■■□□ 2.74
RUFY3-213	ENST00000514898	CIC	Q96RK0	1608 aa	Predicted RBP	32.17	■■■□□ 2.74
RUFY3-213	ENST00000514898	KIAA1551	Q9HCM1	1747 aa		32.17	■■■□□ 2.74
RUFY3-213	ENST00000514898	KIF13B	Q9NQT8	1826 aa		32.16	■■■□□ 2.74
RUFY3-213	ENST00000514898	ATP6V1A	P38606	617 aa		32.16	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms