RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 MCM5P33992 734 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 ZKSCAN5Q9Y2L8 839 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 BLOC1S2Q6QNY1 142 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 KIF14Q15058 1648 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 URB2Q14146 1524 aaKnown RBP9.21□□□□□ -0.93
CLCN3-209ENST00000513761 OFD1O75665 1012 aa9.21□□□□□ -0.93
CLCN3-209ENST00000513761 TRDNQ13061 729 aa9.21□□□□□ -0.93
CLCN3-209ENST00000513761 WASHC4Q2M389 1173 aa9.21□□□□□ -0.93
CLCN3-209ENST00000513761 NFXL1Q6ZNB6 911 aa9.21□□□□□ -0.93
CLCN3-209ENST00000513761 MBIPQ9NS73 344 aa9.21□□□□□ -0.93
CLCN3-209ENST00000513761 PRPF40BQ6NWY9 871 aaKnown RBP9.21□□□□□ -0.93
CLCN3-209ENST00000513761 DDX11Q96FC9 970 aa9.21□□□□□ -0.93
CLCN3-209ENST00000513761 ZMYM4Q5VZL5 1548 aa9.21□□□□□ -0.94
CLCN3-209ENST00000513761 AKAP17AQ02040 695 aaKnown RBP9.21□□□□□ -0.94
CLCN3-209ENST00000513761 TTC5Q8N0Z6 440 aa9.21□□□□□ -0.94
CLCN3-209ENST00000513761 STK38Q15208 465 aa9.21□□□□□ -0.94
CLCN3-209ENST00000513761 TTC12Q9H892 705 aaPredicted RBP9.21□□□□□ -0.94
CLCN3-209ENST00000513761 OLFM4Q6UX06 510 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 RALYLQ86SE5 291 aaKnown RBP9.2□□□□□ -0.94
CLCN3-209ENST00000513761 AACSQ86V21 672 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 GIMAP6Q6P9H5 292 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 WAPLQ7Z5K2 1190 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 NME9Q86XW9 330 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 ZBTB40Q9NUA8 1239 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 ZSCAN31Q96LW9 406 aaPredicted RBP9.2□□□□□ -0.94
CLCN3-209ENST00000513761 HIP1O00291 1037 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 HSP90B2PQ58FF3 399 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 HOOK1Q9UJC3 728 aaKnown RBP9.2□□□□□ -0.94
CLCN3-209ENST00000513761 SPG7Q9UQ90 795 aa9.2□□□□□ -0.94
CLCN3-209ENST00000513761 RTEL1-TNFRSF6BF6WH68 1400 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 FAM177BA6PVY3 158 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 TNNT1P13805 278 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 ATP2B1P20020 1258 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 ANKRD1Q15327 319 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 LRRFIP1Q32MZ4 808 aaKnown RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 SKIDA1Q1XH10 827 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 ZNF396Q96N95 335 aaPredicted RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 SERPINC1P01008 464 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 NOLC1Q14978 699 aaKnown RBP eCLIP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 PCMTD1Q96MG8 357 aaPredicted RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 RBSNQ9H1K0 784 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 PPP6R1Q9UPN7 881 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 PIK3C2GO75747 1445 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 TRMT1Q9NXH9 659 aaKnown RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 CGNQ9P2M7 1197 aaKnown RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 NUP153P49790 1475 aaKnown RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 RPGRIP1LQ68CZ1 1315 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 NOS1P29475 1434 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 BLMP54132 1417 aaPredicted RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 STK11IPQ8N1F8 1099 aa9.19□□□□□ -0.94
CLCN3-209ENST00000513761 TFIP11Q9UBB9 837 aaKnown RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 LRRFIP2Q9Y608 721 aaKnown RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 COL17A1Q9UMD9 1497 aaPredicted RBP9.19□□□□□ -0.94
CLCN3-209ENST00000513761 STX6O43752 255 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 MEIS3Q99687 375 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 LIMCH1Q9UPQ0 1083 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 POLR3AO14802 1390 aaPredicted RBP9.18□□□□□ -0.94
CLCN3-209ENST00000513761 PDE4CQ08493 712 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 PTPN14Q15678 1187 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 ERC1Q8IUD2 1116 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 USP48Q86UV5 1035 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 CLIP2Q9UDT6 1046 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 CNPY2Q9Y2B0 182 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 FAM135AQ9P2D6 1515 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 IPO7O95373 1038 aaKnown RBP9.18□□□□□ -0.94
CLCN3-209ENST00000513761 IL16Q14005 1332 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 TSPYL6Q8N831 410 aa9.18□□□□□ -0.94
CLCN3-209ENST00000513761 UHRF1BP1Q6BDS2 1440 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 CCDC70Q6NSX1 233 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 CEP57L1Q8IYX8 460 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 PRIMPOLQ96LW4 560 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 GJB2P29033 226 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 RBM25P49756 843 aaKnown RBP9.17□□□□□ -0.94
CLCN3-209ENST00000513761 BRPF1P55201 1214 aaPredicted RBP9.17□□□□□ -0.94
CLCN3-209ENST00000513761 PSME1Q06323 249 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 TRERF1Q96PN7 1200 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 CTTNBP2Q8WZ74 1663 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 RAB11FIP3O75154 756 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 RAPGEF3O95398 923 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 SETQ01105 290 aaPredicted RBP9.17□□□□□ -0.94
CLCN3-209ENST00000513761 C8orf58Q8NAV2 365 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 ANKRD20A12PQ8NF67 263 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 GRIN2AQ12879 1464 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 MRPL50Q8N5N7 158 aaKnown RBP9.17□□□□□ -0.94
CLCN3-209ENST00000513761 ABTB2Q8N961 1025 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 KIF1BPQ96EK5 621 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 CFAP45Q9UL16 551 aa9.17□□□□□ -0.94
CLCN3-209ENST00000513761 IGSF3O75054 1194 aa9.16□□□□□ -0.94
CLCN3-209ENST00000513761 SAFBQ15424 915 aaKnown RBP eCLIP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 CLSTN1O94985 981 aa9.16□□□□□ -0.94
CLCN3-209ENST00000513761 UBE2HP62256 183 aa9.16□□□□□ -0.94
CLCN3-209ENST00000513761 CWC15Q9P013 229 aaKnown RBP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 SLC52A1Q9NWF4 448 aa9.16□□□□□ -0.94
CLCN3-209ENST00000513761 ARHGEF12Q9NZN5 1544 aa9.16□□□□□ -0.94
CLCN3-209ENST00000513761 NOM1Q5C9Z4 860 aaKnown RBP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 NUDT16Q96DE0 195 aaKnown RBP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 ZNF692Q9BU19 519 aaPredicted RBP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 C14orf93Q9H972 538 aaKnown RBP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.16□□□□□ -0.94
CLCN3-209ENST00000513761 UVSSAQ2YD98 709 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms