RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 LTN1O94822 1766 aa15.67■□□□□ 0.1
DDX41-216ENST00000513562 HSPA6P17066 643 aa15.65■□□□□ 0.1
DDX41-216ENST00000513562 GPBP1L1Q9HC44 474 aaPredicted RBP15.65■□□□□ 0.1
DDX41-216ENST00000513562 LY75O60449 1722 aa15.65■□□□□ 0.1
DDX41-216ENST00000513562 MSH5O43196 834 aa15.64■□□□□ 0.09
DDX41-216ENST00000513562 HDGFL2Q7Z4V5 671 aaPredicted RBP15.64■□□□□ 0.09
DDX41-216ENST00000513562 CD2APQ9Y5K6 639 aa15.64■□□□□ 0.09
DDX41-216ENST00000513562 FAM208AQ9UK61 1670 aaKnown RBP15.63■□□□□ 0.09
DDX41-216ENST00000513562 DOT1LQ8TEK3 1739 aa15.63■□□□□ 0.09
DDX41-216ENST00000513562 MSL1Q68DK7 614 aa15.63■□□□□ 0.09
DDX41-216ENST00000513562 LTV1Q96GA3 475 aaPredicted RBP15.63■□□□□ 0.09
DDX41-216ENST00000513562 MEGF6O75095 1541 aa15.63■□□□□ 0.09
DDX41-216ENST00000513562 A0A1W2PP64 1363 aa15.62■□□□□ 0.09
DDX41-216ENST00000513562 USP47Q96K76 1375 aa15.62■□□□□ 0.09
DDX41-216ENST00000513562 ZCRB1Q8TBF4 217 aaKnown RBP15.62■□□□□ 0.09
DDX41-216ENST00000513562 TMC1Q8TDI8 760 aa15.62■□□□□ 0.09
DDX41-216ENST00000513562 SLC12A5Q9H2X9 1139 aa15.61■□□□□ 0.09
DDX41-216ENST00000513562 HOXC9P31274 260 aa15.6■□□□□ 0.09
DDX41-216ENST00000513562 TERF2IPQ9NYB0 399 aa15.6■□□□□ 0.09
DDX41-216ENST00000513562 ZNF526Q8TF50 670 aaPredicted RBP15.59■□□□□ 0.09
DDX41-216ENST00000513562 MAP3K19Q56UN5 1328 aa15.59■□□□□ 0.09
DDX41-216ENST00000513562 FLAD1Q8NFF5 587 aa15.58■□□□□ 0.08
DDX41-216ENST00000513562 HMGB2P26583 209 aaKnown RBP15.57■□□□□ 0.08
DDX41-216ENST00000513562 SIN3AQ96ST3 1273 aa15.57■□□□□ 0.08
DDX41-216ENST00000513562 PUS7Q96PZ0 661 aaKnown RBP15.56■□□□□ 0.08
DDX41-216ENST00000513562 CGNL1Q0VF96 1302 aa15.56■□□□□ 0.08
DDX41-216ENST00000513562 RTL1A6NKG5 1358 aa15.56■□□□□ 0.08
DDX41-216ENST00000513562 PALLDQ8WX93 1383 aa15.55■□□□□ 0.08
DDX41-216ENST00000513562 IGSF1Q8N6C5 1336 aa15.55■□□□□ 0.08
DDX41-216ENST00000513562 AMPHP49418 695 aa15.55■□□□□ 0.08
DDX41-216ENST00000513562 COG3Q96JB2 828 aa15.55■□□□□ 0.08
DDX41-216ENST00000513562 C5P01031 1676 aa15.54■□□□□ 0.08
DDX41-216ENST00000513562 KIF3CO14782 793 aa15.54■□□□□ 0.08
DDX41-216ENST00000513562 NBPF6Q5VWK0 638 aa15.54■□□□□ 0.08
DDX41-216ENST00000513562 NBPF4Q96M43 638 aa15.54■□□□□ 0.08
DDX41-216ENST00000513562 CARD11Q9BXL7 1154 aa15.54■□□□□ 0.08
DDX41-216ENST00000513562 FBLN1P23142 703 aa15.53■□□□□ 0.08
DDX41-216ENST00000513562 AMIGO3Q86WK7 504 aa15.53■□□□□ 0.08
DDX41-216ENST00000513562 RAPGEF4Q8WZA2 1011 aa15.52■□□□□ 0.08
DDX41-216ENST00000513562 CICQ96RK0 1608 aaPredicted RBP15.51■□□□□ 0.07
DDX41-216ENST00000513562 PCDH11XQ9BZA7 1347 aa15.51■□□□□ 0.07
DDX41-216ENST00000513562 PCDH11YQ9BZA8 1340 aa15.51■□□□□ 0.07
DDX41-216ENST00000513562 NEUROD1Q13562 356 aa15.51■□□□□ 0.07
DDX41-216ENST00000513562 USHBP1Q8N6Y0 703 aa15.51■□□□□ 0.07
DDX41-216ENST00000513562 AK7Q96M32 723 aa15.51■□□□□ 0.07
DDX41-216ENST00000513562 NSD3Q9BZ95 1437 aa15.51■□□□□ 0.07
DDX41-216ENST00000513562 KAT6BQ8WYB5 2073 aa15.5■□□□□ 0.07
DDX41-216ENST00000513562 APLP1P51693 650 aa15.5■□□□□ 0.07
DDX41-216ENST00000513562 WWC3Q9ULE0 1092 aa15.5■□□□□ 0.07
DDX41-216ENST00000513562 C4BP0C0L5 1744 aa15.5■□□□□ 0.07
DDX41-216ENST00000513562 SMG6Q86US8 1419 aaKnown RBP15.5■□□□□ 0.07
DDX41-216ENST00000513562 TOGARAM1Q9Y4F4 1720 aa15.49■□□□□ 0.07
DDX41-216ENST00000513562 TATP17735 454 aaPredicted RBP15.49■□□□□ 0.07
DDX41-216ENST00000513562 MPRIPQ6WCQ1 1025 aa15.49■□□□□ 0.07
DDX41-216ENST00000513562 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.48■□□□□ 0.07
DDX41-216ENST00000513562 PHF14O94880 888 aa15.48■□□□□ 0.07
DDX41-216ENST00000513562 SSFA2P28290 1259 aa15.48■□□□□ 0.07
DDX41-216ENST00000513562 RRS1Q15050 365 aaKnown RBP15.48■□□□□ 0.07
DDX41-216ENST00000513562 SMARCC1Q92922 1105 aaPredicted RBP15.48■□□□□ 0.07
DDX41-216ENST00000513562 CYP27B1O15528 508 aa15.47■□□□□ 0.07
DDX41-216ENST00000513562 SMIM5Q71RC9 77 aa15.47■□□□□ 0.07
DDX41-216ENST00000513562 DNAJC5GQ8N7S2 189 aa15.47■□□□□ 0.07
DDX41-216ENST00000513562 RGPD2P0DJD1 1756 aa15.47■□□□□ 0.07
DDX41-216ENST00000513562 TOMM70O94826 608 aa15.45■□□□□ 0.06
DDX41-216ENST00000513562 TESK2Q96S53 571 aa15.45■□□□□ 0.06
DDX41-216ENST00000513562 INSRP06213 1382 aa15.45■□□□□ 0.06
DDX41-216ENST00000513562 PXDNLA1KZ92 1463 aa15.45■□□□□ 0.06
DDX41-216ENST00000513562 TAF1LQ8IZX4 1826 aa15.45■□□□□ 0.06
DDX41-216ENST00000513562 LINC00116Q8NCU8 138 aa15.44■□□□□ 0.06
DDX41-216ENST00000513562 PIGBQ92521 554 aa15.44■□□□□ 0.06
DDX41-216ENST00000513562 FYB1O15117 783 aa15.43■□□□□ 0.06
DDX41-216ENST00000513562 HSP90AB2PQ58FF8 381 aa15.43■□□□□ 0.06
DDX41-216ENST00000513562 FLT4P35916 1363 aa15.43■□□□□ 0.06
DDX41-216ENST00000513562 KIF24Q5T7B8 1368 aa15.43■□□□□ 0.06
DDX41-216ENST00000513562 UBR3Q6ZT12 1888 aa15.42■□□□□ 0.06
DDX41-216ENST00000513562 LOC102724428A0A0B4J2F2 783 aa15.42■□□□□ 0.06
DDX41-216ENST00000513562 SIK1P57059 783 aa15.42■□□□□ 0.06
DDX41-216ENST00000513562 NKX1-1Q15270 411 aaPredicted RBP15.42■□□□□ 0.06
DDX41-216ENST00000513562 GGNBP2Q9H3C7 697 aa15.42■□□□□ 0.06
DDX41-216ENST00000513562 GNPATO15228 680 aa15.41■□□□□ 0.06
DDX41-216ENST00000513562 MMP10P09238 476 aa15.41■□□□□ 0.06
DDX41-216ENST00000513562 NCAPD2Q15021 1401 aa15.41■□□□□ 0.06
DDX41-216ENST00000513562 TGFB2P61812 414 aa15.4■□□□□ 0.06
DDX41-216ENST00000513562 ITPK1Q13572 414 aa15.4■□□□□ 0.06
DDX41-216ENST00000513562 C10orf71Q711Q0 1435 aa15.4■□□□□ 0.06
DDX41-216ENST00000513562 ST20-MTHFSA0A0A6YYL1 179 aa15.39■□□□□ 0.05
DDX41-216ENST00000513562 NMRK2Q9NPI5 230 aa15.39■□□□□ 0.05
DDX41-216ENST00000513562 BCS1LQ9Y276 419 aa15.39■□□□□ 0.05
DDX41-216ENST00000513562 PKD1L3Q7Z443 1732 aa15.39■□□□□ 0.05
DDX41-216ENST00000513562 MAP2P11137 1827 aaKnown RBP15.38■□□□□ 0.05
DDX41-216ENST00000513562 KIAA1551Q9HCM1 1747 aa15.38■□□□□ 0.05
DDX41-216ENST00000513562 SLC24A1O60721 1099 aa15.38■□□□□ 0.05
DDX41-216ENST00000513562 RBM46Q8TBY0 533 aaKnown RBP15.38■□□□□ 0.05
DDX41-216ENST00000513562 JMYQ8N9B5 988 aa15.37■□□□□ 0.05
DDX41-216ENST00000513562 TMOD3Q9NYL9 352 aa15.37■□□□□ 0.05
DDX41-216ENST00000513562 ASAP1Q9ULH1 1129 aa15.37■□□□□ 0.05
DDX41-216ENST00000513562 A0A0G2JLW4 131 aa15.36■□□□□ 0.05
DDX41-216ENST00000513562 ATP6V1AP38606 617 aa15.36■□□□□ 0.05
DDX41-216ENST00000513562 KLRG1Q96E93 195 aa15.36■□□□□ 0.05
DDX41-216ENST00000513562 SPG7Q9UQ90 795 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms