RNA–Protein interactions for RNA: ENST00000513143.5

PDPN-210, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,305 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-210ENST00000513143 TCP11L2Q8N4U5 519 aa16.58■□□□□ 0.24
PDPN-210ENST00000513143 RAPGEF4Q8WZA2 1011 aa16.58■□□□□ 0.24
PDPN-210ENST00000513143 THRAP3Q9Y2W1 955 aaKnown RBP16.58■□□□□ 0.24
PDPN-210ENST00000513143 PARP4Q9UKK3 1724 aaKnown RBP16.58■□□□□ 0.24
PDPN-210ENST00000513143 ATRNO75882 1429 aa16.57■□□□□ 0.24
PDPN-210ENST00000513143 MEGF6O75095 1541 aa16.57■□□□□ 0.24
PDPN-210ENST00000513143 APAF1O14727 1248 aa16.57■□□□□ 0.24
PDPN-210ENST00000513143 USP35Q9P2H5 1018 aa16.57■□□□□ 0.24
PDPN-210ENST00000513143 IL2RBP14784 551 aa16.56■□□□□ 0.24
PDPN-210ENST00000513143 TATP17735 454 aaPredicted RBP16.56■□□□□ 0.24
PDPN-210ENST00000513143 TRPC5Q9UL62 973 aaPredicted RBP16.56■□□□□ 0.24
PDPN-210ENST00000513143 CCDC9Q9Y3X0 531 aaKnown RBP16.56■□□□□ 0.24
PDPN-210ENST00000513143 DLG5Q8TDM6 1919 aa16.56■□□□□ 0.24
PDPN-210ENST00000513143 PKD1L3Q7Z443 1732 aa16.56■□□□□ 0.24
PDPN-210ENST00000513143 DISP2A7MBM2 1401 aa16.56■□□□□ 0.24
PDPN-210ENST00000513143 AMOTQ4VCS5 1084 aa16.55■□□□□ 0.24
PDPN-210ENST00000513143 BARGINQ6ZT62 677 aa16.55■□□□□ 0.24
PDPN-210ENST00000513143 OVOS2A0A0G2JMS6 1433 aa16.55■□□□□ 0.24
PDPN-210ENST00000513143 TMPOP42166 694 aaKnown RBP16.54■□□□□ 0.24
PDPN-210ENST00000513143 HNRNPUQ00839 825 aaKnown RBP eCLIP16.54■□□□□ 0.24
PDPN-210ENST00000513143 MTHFSDQ2M296 383 aaKnown RBP16.54■□□□□ 0.24
PDPN-210ENST00000513143 PLEKHO1Q53GL0 409 aaPredicted RBP16.54■□□□□ 0.24
PDPN-210ENST00000513143 ZNF772Q68DY9 489 aaPredicted RBP16.54■□□□□ 0.24
PDPN-210ENST00000513143 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.54■□□□□ 0.24
PDPN-210ENST00000513143 NFE2L2Q16236 605 aa16.53■□□□□ 0.24
PDPN-210ENST00000513143 NGEFQ8N5V2 710 aa16.53■□□□□ 0.24
PDPN-210ENST00000513143 GJD4Q96KN9 370 aaPredicted RBP16.53■□□□□ 0.24
PDPN-210ENST00000513143 CDCA7Q9BWT1 371 aaPredicted RBP16.53■□□□□ 0.24
PDPN-210ENST00000513143 QTRT2Q9H974 415 aaKnown RBP16.53■□□□□ 0.24
PDPN-210ENST00000513143 GLI3P10071 1580 aa16.53■□□□□ 0.24
PDPN-210ENST00000513143 GAS2L2Q8NHY3 880 aa16.52■□□□□ 0.24
PDPN-210ENST00000513143 SHANK3Q9BYB0 1731 aa16.52■□□□□ 0.23
PDPN-210ENST00000513143 ZCRB1Q8TBF4 217 aaKnown RBP16.51■□□□□ 0.23
PDPN-210ENST00000513143 YTHDC1Q96MU7 727 aaKnown RBP16.51■□□□□ 0.23
PDPN-210ENST00000513143 SPG7Q9UQ90 795 aa16.51■□□□□ 0.23
PDPN-210ENST00000513143 RRP7AQ9Y3A4 280 aaKnown RBP16.51■□□□□ 0.23
PDPN-210ENST00000513143 SENP3-EIF4A1A0A087X0R7 540 aa16.5■□□□□ 0.23
PDPN-210ENST00000513143 RIPK4P57078 832 aa16.5■□□□□ 0.23
PDPN-210ENST00000513143 NEUROD2Q15784 382 aa16.5■□□□□ 0.23
PDPN-210ENST00000513143 FAM98CQ17RN3 349 aaKnown RBP16.49■□□□□ 0.23
PDPN-210ENST00000513143 CCDC27Q2M243 656 aa16.49■□□□□ 0.23
PDPN-210ENST00000513143 THSD7AQ9UPZ6 1657 aa16.49■□□□□ 0.23
PDPN-210ENST00000513143 ONECUT3O60422 494 aaPredicted RBP16.48■□□□□ 0.23
PDPN-210ENST00000513143 AKAP4Q5JQC9 854 aa16.48■□□□□ 0.23
PDPN-210ENST00000513143 ZNF530Q6P9A1 599 aaPredicted RBP16.48■□□□□ 0.23
PDPN-210ENST00000513143 RGS17Q9UGC6 210 aaPredicted RBP16.48■□□□□ 0.23
PDPN-210ENST00000513143 TRIM35Q9UPQ4 493 aa16.48■□□□□ 0.23
PDPN-210ENST00000513143 SALL2Q9Y467 1007 aaPredicted RBP16.48■□□□□ 0.23
PDPN-210ENST00000513143 LRRC37A3O60309 1634 aa16.48■□□□□ 0.23
PDPN-210ENST00000513143 VIRMAQ69YN4 1812 aaKnown RBP16.48■□□□□ 0.23
PDPN-210ENST00000513143 HTATSF1O43719 755 aaKnown RBP16.47■□□□□ 0.23
PDPN-210ENST00000513143 ZBED9Q6R2W3 1325 aa16.47■□□□□ 0.23
PDPN-210ENST00000513143 MAP3K5Q99683 1374 aa16.47■□□□□ 0.23
PDPN-210ENST00000513143 TNS2Q63HR2 1409 aa16.47■□□□□ 0.23
PDPN-210ENST00000513143 GNAT3A8MTJ3 354 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 EXOC5O00471 708 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 CYP27B1O15528 508 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 PHKG2P15735 406 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 LMOD3Q0VAK6 560 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 C1orf141Q5JVX7 400 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 WWC1Q8IX03 1113 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 IFNL2Q8IZJ0 200 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 ZNF521Q96K83 1311 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 PCDH11XQ9BZA7 1347 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 PCDH11YQ9BZA8 1340 aa16.46■□□□□ 0.23
PDPN-210ENST00000513143 RBM6P78332 1123 aaKnown RBP16.45■□□□□ 0.22
PDPN-210ENST00000513143 DDB1Q16531 1140 aa16.45■□□□□ 0.22
PDPN-210ENST00000513143 ADAMTS7Q9UKP4 1686 aa16.45■□□□□ 0.22
PDPN-210ENST00000513143 SCN11AQ9UI33 1791 aa16.44■□□□□ 0.22
PDPN-210ENST00000513143 NKX1-1Q15270 411 aaPredicted RBP16.44■□□□□ 0.22
PDPN-210ENST00000513143 RTF1Q92541 710 aaKnown RBP16.44■□□□□ 0.22
PDPN-210ENST00000513143 HSP90AB1P08238 724 aaKnown RBP16.43■□□□□ 0.22
PDPN-210ENST00000513143 IL17REQ8NFR9 667 aa16.43■□□□□ 0.22
PDPN-210ENST00000513143 DDX54Q8TDD1 881 aaKnown RBP16.43■□□□□ 0.22
PDPN-210ENST00000513143 CEMIPQ8WUJ3 1361 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 RXRBP28702 533 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 DCTN1Q14203 1278 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 POTEAQ6S8J7 498 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 MCM10Q7L590 875 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 WDR63Q8IWG1 891 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 SEPT12Q8IYM1 358 aa16.42■□□□□ 0.22
PDPN-210ENST00000513143 RNMTO43148 476 aaKnown RBP16.41■□□□□ 0.22
PDPN-210ENST00000513143 MPRIPQ6WCQ1 1025 aa16.41■□□□□ 0.22
PDPN-210ENST00000513143 DCAF5Q96JK2 942 aa16.41■□□□□ 0.22
PDPN-210ENST00000513143 LGR6Q9HBX8 967 aa16.41■□□□□ 0.22
PDPN-210ENST00000513143 BRWD3Q6RI45 1802 aa16.4■□□□□ 0.22
PDPN-210ENST00000513143 KDM6AO15550 1401 aaPredicted RBP16.4■□□□□ 0.22
PDPN-210ENST00000513143 A0A0G2JS52 829 aa16.4■□□□□ 0.22
PDPN-210ENST00000513143 MYT1Q01538 1121 aa16.4■□□□□ 0.22
PDPN-210ENST00000513143 CALD1Q05682 793 aaKnown RBP16.4■□□□□ 0.22
PDPN-210ENST00000513143 MARCH10Q8NA82 808 aaPredicted RBP16.4■□□□□ 0.22
PDPN-210ENST00000513143 THUMPD2Q9BTF0 503 aaKnown RBP16.4■□□□□ 0.22
PDPN-210ENST00000513143 IL16Q14005 1332 aa16.39■□□□□ 0.21
PDPN-210ENST00000513143 GOLGA2Q08379 1002 aa16.39■□□□□ 0.21
PDPN-210ENST00000513143 PDE3BQ13370 1112 aa16.39■□□□□ 0.21
PDPN-210ENST00000513143 SIPA1L3O60292 1781 aaPredicted RBP16.38■□□□□ 0.21
PDPN-210ENST00000513143 TOGARAM1Q9Y4F4 1720 aa16.37■□□□□ 0.21
PDPN-210ENST00000513143 MRC1P22897 1456 aa16.37■□□□□ 0.21
PDPN-210ENST00000513143 U3KPZ7 1027 aaPredicted RBP16.37■□□□□ 0.21
PDPN-210ENST00000513143 KAT6BQ8WYB5 2073 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms