RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 CDCA8Q53HL2 280 aa15.57■□□□□ 0.08
LIMCH1-214ENST00000512228 CLSPNQ9HAW4 1339 aa15.57■□□□□ 0.08
LIMCH1-214ENST00000512228 NSD2O96028 1365 aa15.57■□□□□ 0.08
LIMCH1-214ENST00000512228 NSD3Q9BZ95 1437 aa15.57■□□□□ 0.08
LIMCH1-214ENST00000512228 PAPPAQ13219 1627 aa15.57■□□□□ 0.08
LIMCH1-214ENST00000512228 HSPA5P11021 654 aaKnown RBP15.56■□□□□ 0.08
LIMCH1-214ENST00000512228 POLR3GLQ9BT43 218 aa15.56■□□□□ 0.08
LIMCH1-214ENST00000512228 STK32BQ9NY57 414 aa15.56■□□□□ 0.08
LIMCH1-214ENST00000512228 INSRP06213 1382 aa15.55■□□□□ 0.08
LIMCH1-214ENST00000512228 SGIP1Q9BQI5 828 aa15.55■□□□□ 0.08
LIMCH1-214ENST00000512228 DOT1LQ8TEK3 1739 aa15.54■□□□□ 0.08
LIMCH1-214ENST00000512228 RTL1A6NKG5 1358 aa15.54■□□□□ 0.08
LIMCH1-214ENST00000512228 AKT1S1Q96B36 256 aa15.54■□□□□ 0.08
LIMCH1-214ENST00000512228 SYTL4Q96C24 671 aaPredicted RBP15.54■□□□□ 0.08
LIMCH1-214ENST00000512228 PPM1GO15355 546 aaPredicted RBP15.53■□□□□ 0.08
LIMCH1-214ENST00000512228 CCER1Q8TC90 406 aaPredicted RBP15.53■□□□□ 0.08
LIMCH1-214ENST00000512228 POLKQ9UBT6 870 aa15.53■□□□□ 0.08
LIMCH1-214ENST00000512228 PPP1R1BQ9UD71 204 aaPredicted RBP15.53■□□□□ 0.08
LIMCH1-214ENST00000512228 CYP27B1O15528 508 aa15.52■□□□□ 0.08
LIMCH1-214ENST00000512228 FLT4P35916 1363 aa15.51■□□□□ 0.07
LIMCH1-214ENST00000512228 TNNT2P45379 298 aaPredicted RBP15.51■□□□□ 0.07
LIMCH1-214ENST00000512228 PANK3Q9H999 370 aa15.51■□□□□ 0.07
LIMCH1-214ENST00000512228 LY75O60449 1722 aa15.51■□□□□ 0.07
LIMCH1-214ENST00000512228 TUBGCP6Q96RT7 1819 aa15.5■□□□□ 0.07
LIMCH1-214ENST00000512228 RAPGEF4Q8WZA2 1011 aa15.5■□□□□ 0.07
LIMCH1-214ENST00000512228 EYA1Q99502 592 aa15.5■□□□□ 0.07
LIMCH1-214ENST00000512228 WASHC2AQ641Q2 1341 aa15.49■□□□□ 0.07
LIMCH1-214ENST00000512228 TATP17735 454 aaPredicted RBP15.49■□□□□ 0.07
LIMCH1-214ENST00000512228 EIF4G2P78344 907 aaKnown RBP eCLIP15.49■□□□□ 0.07
LIMCH1-214ENST00000512228 MTFR1LQ9H019 292 aa15.49■□□□□ 0.07
LIMCH1-214ENST00000512228 ANKRD26Q9UPS8 1709 aa15.48■□□□□ 0.07
LIMCH1-214ENST00000512228 PNPLA7Q6ZV29 1317 aa15.48■□□□□ 0.07
LIMCH1-214ENST00000512228 SLC27A3Q5K4L6 730 aa15.48■□□□□ 0.07
LIMCH1-214ENST00000512228 SYT17Q9BSW7 474 aa15.48■□□□□ 0.07
LIMCH1-214ENST00000512228 FHDC1Q9C0D6 1143 aaPredicted RBP15.48■□□□□ 0.07
LIMCH1-214ENST00000512228 KIF24Q5T7B8 1368 aa15.48■□□□□ 0.07
LIMCH1-214ENST00000512228 ITGB4P16144 1822 aa15.47■□□□□ 0.07
LIMCH1-214ENST00000512228 CGNL1Q0VF96 1302 aa15.47■□□□□ 0.07
LIMCH1-214ENST00000512228 TOGARAM1Q9Y4F4 1720 aa15.47■□□□□ 0.07
LIMCH1-214ENST00000512228 NCAPD2Q15021 1401 aa15.46■□□□□ 0.07
LIMCH1-214ENST00000512228 MPRIPQ6WCQ1 1025 aa15.46■□□□□ 0.07
LIMCH1-214ENST00000512228 SMG6Q86US8 1419 aaKnown RBP15.45■□□□□ 0.06
LIMCH1-214ENST00000512228 EIF4A2Q14240 407 aaKnown RBP15.45■□□□□ 0.06
LIMCH1-214ENST00000512228 SMIM5Q71RC9 77 aa15.45■□□□□ 0.06
LIMCH1-214ENST00000512228 CCNL1Q9UK58 526 aaPredicted RBP15.45■□□□□ 0.06
LIMCH1-214ENST00000512228 PKD1L3Q7Z443 1732 aa15.44■□□□□ 0.06
LIMCH1-214ENST00000512228 AMIGO3Q86WK7 504 aa15.44■□□□□ 0.06
LIMCH1-214ENST00000512228 COL23A1Q86Y22 540 aaPredicted RBP15.44■□□□□ 0.06
LIMCH1-214ENST00000512228 PIGBQ92521 554 aa15.44■□□□□ 0.06
LIMCH1-214ENST00000512228 QSER1Q2KHR3 1735 aa15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 NKX1-1Q15270 411 aaPredicted RBP15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 ARXQ96QS3 562 aa15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 TFCP2L1Q9NZI6 479 aa15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 COL24A1Q17RW2 1714 aa15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 PCDH11XQ9BZA7 1347 aa15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 PCDH11YQ9BZA8 1340 aa15.43■□□□□ 0.06
LIMCH1-214ENST00000512228 TAF1LQ8IZX4 1826 aa15.42■□□□□ 0.06
LIMCH1-214ENST00000512228 YY1P25490 414 aa15.41■□□□□ 0.06
LIMCH1-214ENST00000512228 PHKG2P15735 406 aa15.39■□□□□ 0.05
LIMCH1-214ENST00000512228 ASAP1Q9ULH1 1129 aa15.39■□□□□ 0.05
LIMCH1-214ENST00000512228 C5P01031 1676 aa15.38■□□□□ 0.05
LIMCH1-214ENST00000512228 PALLDQ8WX93 1383 aa15.38■□□□□ 0.05
LIMCH1-214ENST00000512228 AEBP1Q8IUX7 1158 aa15.38■□□□□ 0.05
LIMCH1-214ENST00000512228 SLC16A10Q8TF71 515 aa15.38■□□□□ 0.05
LIMCH1-214ENST00000512228 SPG7Q9UQ90 795 aa15.38■□□□□ 0.05
LIMCH1-214ENST00000512228 MSL1Q68DK7 614 aa15.37■□□□□ 0.05
LIMCH1-214ENST00000512228 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIMCH1-214ENST00000512228 KIF7Q2M1P5 1343 aa15.37■□□□□ 0.05
LIMCH1-214ENST00000512228 PER1O15534 1290 aaPredicted RBP15.36■□□□□ 0.05
LIMCH1-214ENST00000512228 AMER1Q5JTC6 1135 aaPredicted RBP15.36■□□□□ 0.05
LIMCH1-214ENST00000512228 MORC1Q86VD1 984 aa15.36■□□□□ 0.05
LIMCH1-214ENST00000512228 NLGN2Q8NFZ4 835 aa15.36■□□□□ 0.05
LIMCH1-214ENST00000512228 ATG3Q9NT62 314 aa15.36■□□□□ 0.05
LIMCH1-214ENST00000512228 IGSF1Q8N6C5 1336 aa15.36■□□□□ 0.05
LIMCH1-214ENST00000512228 MSH5O43196 834 aa15.35■□□□□ 0.05
LIMCH1-214ENST00000512228 ITPK1Q13572 414 aa15.35■□□□□ 0.05
LIMCH1-214ENST00000512228 IFNL2Q8IZJ0 200 aa15.35■□□□□ 0.05
LIMCH1-214ENST00000512228 LINC00116Q8NCU8 138 aa15.35■□□□□ 0.05
LIMCH1-214ENST00000512228 KLHL34Q8N239 644 aa15.34■□□□□ 0.05
LIMCH1-214ENST00000512228 SLC4A9Q96Q91 983 aa15.34■□□□□ 0.05
LIMCH1-214ENST00000512228 C4BP0C0L5 1744 aa15.34■□□□□ 0.05
LIMCH1-214ENST00000512228 LOC102724428A0A0B4J2F2 783 aa15.33■□□□□ 0.04
LIMCH1-214ENST00000512228 IL13P35225 146 aa15.33■□□□□ 0.04
LIMCH1-214ENST00000512228 SIK1P57059 783 aa15.33■□□□□ 0.04
LIMCH1-214ENST00000512228 MAP3K5Q99683 1374 aa15.33■□□□□ 0.04
LIMCH1-214ENST00000512228 UBR3Q6ZT12 1888 aa15.33■□□□□ 0.04
LIMCH1-214ENST00000512228 SMARCC1Q92922 1105 aaPredicted RBP15.32■□□□□ 0.04
LIMCH1-214ENST00000512228 TMOD3Q9NYL9 352 aa15.32■□□□□ 0.04
LIMCH1-214ENST00000512228 KNSTRNQ9Y448 316 aa15.32■□□□□ 0.04
LIMCH1-214ENST00000512228 DCAF8L1A6NGE4 600 aa15.31■□□□□ 0.04
LIMCH1-214ENST00000512228 KDM6AO15550 1401 aaPredicted RBP15.3■□□□□ 0.04
LIMCH1-214ENST00000512228 PHF14O94880 888 aa15.3■□□□□ 0.04
LIMCH1-214ENST00000512228 POLD1P28340 1107 aa15.3■□□□□ 0.04
LIMCH1-214ENST00000512228 MTHFSP49914 203 aa15.3■□□□□ 0.04
LIMCH1-214ENST00000512228 CHD4Q14839 1912 aa15.3■□□□□ 0.04
LIMCH1-214ENST00000512228 SULT6B1Q6IMI4 303 aa15.3■□□□□ 0.04
LIMCH1-214ENST00000512228 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-214ENST00000512228 YBX3P16989 372 aaKnown RBP eCLIP15.29■□□□□ 0.04
LIMCH1-214ENST00000512228 ATP6V1AP38606 617 aa15.29■□□□□ 0.04
LIMCH1-214ENST00000512228 UTRNP46939 3433 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms