RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SSH1Q8WYL5 1049 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 GAPVD1Q14C86 1478 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 PNMA6AP0CW24 399 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 SRLQ86TD4 932 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 ERO1AQ96HE7 468 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 FHOD1Q9Y613 1164 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 PTPN14Q15678 1187 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 PACS2Q86VP3 889 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 CXorf56Q9H5V9 222 aa14.36□□□□□ -0.11
LIMCH1-213ENST00000511496 TDO2P48775 406 aa14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 TRIM5Q9C035 493 aa14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 EXOSC9Q06265 439 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 NOM1Q5C9Z4 860 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 CNPY2Q9Y2B0 182 aa14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 CHMP3Q9Y3E7 222 aa14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 SLU7O95391 586 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 CLCN6P51797 869 aa14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 ZSCAN25Q6NSZ9 544 aa14.35□□□□□ -0.11
LIMCH1-213ENST00000511496 ANKRD65E5RJM6 399 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 LMAN1P49257 510 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 EGFL6Q8IUX8 553 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 USP27XA6NNY8 438 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 FIBPO43427 364 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 GSPT1P15170 499 aaKnown RBP14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 RUNDC1Q96C34 613 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 SUFUQ9UMX1 484 aa14.34□□□□□ -0.11
LIMCH1-213ENST00000511496 LUZP1Q86V48 1076 aa14.33□□□□□ -0.12
LIMCH1-213ENST00000511496 SYTL4Q96C24 671 aaPredicted RBP14.33□□□□□ -0.12
LIMCH1-213ENST00000511496 STK26Q9P289 416 aa14.33□□□□□ -0.12
LIMCH1-213ENST00000511496 SPAG9O60271 1321 aaKnown RBP14.33□□□□□ -0.12
LIMCH1-213ENST00000511496 ATP2B1P20020 1258 aa14.33□□□□□ -0.12
LIMCH1-213ENST00000511496 PTPRCP08575 1304 aa14.33□□□□□ -0.12
LIMCH1-213ENST00000511496 CCDC27Q2M243 656 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 WDR63Q8IWG1 891 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 CACTINQ8WUQ7 758 aaKnown RBP14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 ATG3Q9NT62 314 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 GPRASP1Q5JY77 1395 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 GORABQ5T7V8 394 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 PIK3C2GO75747 1445 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 TMCO3Q6UWJ1 677 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 GRIN2BQ13224 1484 aa14.32□□□□□ -0.12
LIMCH1-213ENST00000511496 GOLIM4O00461 696 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 SATB1Q01826 763 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 ARHGAP29Q52LW3 1261 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 CCDC91Q7Z6B0 441 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 APBB1O00213 710 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 DONSONQ9NYP3 566 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 LRRIQ1Q96JM4 1722 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 OAS2P29728 719 aaKnown RBP14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 INTS3Q68E01 1043 aaKnown RBP14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 FBXO18Q8NFZ0 1043 aa14.31□□□□□ -0.12
LIMCH1-213ENST00000511496 ARHGEF11O15085 1522 aa14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 SEC31AO94979 1220 aaKnown RBP14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 TSGA10IPQ3SY00 556 aa14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 SLFNL1Q499Z3 407 aa14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 CCDC34Q96HJ3 373 aa14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 C16orf71Q8IYS4 520 aaPredicted RBP14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 ABCC2Q92887 1545 aa14.3□□□□□ -0.12
LIMCH1-213ENST00000511496 ARID5BQ14865 1188 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 CAMK4Q16566 473 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 TTLL5Q6EMB2 1281 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 LRRN4CLQ8ND94 238 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 CCDC192P0DO97 292 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 FAM43BQ6ZT52 329 aaPredicted RBP14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 GCC1Q96CN9 775 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 AK7Q96M32 723 aa14.29□□□□□ -0.12
LIMCH1-213ENST00000511496 H2AFXP16104 143 aaPredicted RBP14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 GOLGA5Q8TBA6 731 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 CLIP2Q9UDT6 1046 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 HSP90B1P14625 803 aaKnown RBP14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 CASC1Q6TDU7 716 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 SRCIN1Q9C0H9 1055 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 ARHGEF12Q9NZN5 1544 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 RNF217Q8TC41 542 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 PRAG1Q86YV5 1406 aa14.28□□□□□ -0.12
LIMCH1-213ENST00000511496 DTNBO60941 627 aa14.27□□□□□ -0.12
LIMCH1-213ENST00000511496 MAP2K2P36507 400 aa14.27□□□□□ -0.12
LIMCH1-213ENST00000511496 MAGEA9P43362 315 aa14.27□□□□□ -0.12
LIMCH1-213ENST00000511496 UBE2HP62256 183 aa14.27□□□□□ -0.12
LIMCH1-213ENST00000511496 PLXNC1O60486 1568 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 CCDC144BQ3MJ40 725 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 CCDC144CPQ8IYA2 1237 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 FUCA2Q9BTY2 467 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 ARGLU1Q9NWB6 273 aaPredicted RBP14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 WDR33Q9C0J8 1336 aaKnown RBP14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 SKIDA1Q1XH10 827 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 RNF20Q5VTR2 975 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 ANKRD20A12PQ8NF67 263 aa14.27□□□□□ -0.13
LIMCH1-213ENST00000511496 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 IPO8O15397 1037 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 CASTP20810 708 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 LEKR1Q6ZMV7 388 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 FAM200AQ8TCP9 573 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 ERBB3P21860 1342 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 PLEKHM2Q8IWE5 1019 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 CKAP2LQ8IYA6 745 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 CNKSR2Q8WXI2 1034 aa14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 CFDP1Q9UEE9 299 aaPredicted RBP14.26□□□□□ -0.13
LIMCH1-213ENST00000511496 EIF3CLB5ME19 914 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-213ENST00000511496 SKILP12757 684 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms