RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 ZSCAN1Q8NBB4 408 aa11.83□□□□□ -0.52
NUP54-210ENST00000510884 PCDHB11Q9Y5F2 797 aa11.83□□□□□ -0.52
NUP54-210ENST00000510884 TRAK2O60296 914 aa11.82□□□□□ -0.52
NUP54-210ENST00000510884 CYP2U1Q7Z449 544 aa11.82□□□□□ -0.52
NUP54-210ENST00000510884 CEP126Q9P2H0 1117 aa11.82□□□□□ -0.52
NUP54-210ENST00000510884 ITGA6P23229 1130 aa11.81□□□□□ -0.52
NUP54-210ENST00000510884 GPC1P35052 558 aa11.81□□□□□ -0.52
NUP54-210ENST00000510884 MCM6Q14566 821 aa11.81□□□□□ -0.52
NUP54-210ENST00000510884 LYSMD3Q7Z3D4 306 aa11.8□□□□□ -0.52
NUP54-210ENST00000510884 OSBPL3Q9H4L5 887 aa11.8□□□□□ -0.52
NUP54-210ENST00000510884 A0A1W2PRU2 124 aa11.79□□□□□ -0.52
NUP54-210ENST00000510884 EIF4G2P78344 907 aaKnown RBP eCLIP11.79□□□□□ -0.52
NUP54-210ENST00000510884 GPR161Q8N6U8 529 aaKnown RBP11.79□□□□□ -0.52
NUP54-210ENST00000510884 CCDC85AQ96PX6 553 aaPredicted RBP11.79□□□□□ -0.52
NUP54-210ENST00000510884 CLN3Q13286 438 aa11.78□□□□□ -0.52
NUP54-210ENST00000510884 GDPD2Q9HCC8 539 aa11.78□□□□□ -0.52
NUP54-210ENST00000510884 FAM181BA6NEQ2 426 aa11.77□□□□□ -0.53
NUP54-210ENST00000510884 MEN1O00255 615 aa11.76□□□□□ -0.53
NUP54-210ENST00000510884 KRT76Q01546 638 aa11.76□□□□□ -0.53
NUP54-210ENST00000510884 PHTF2Q8N3S3 785 aa11.76□□□□□ -0.53
NUP54-210ENST00000510884 ABL2P42684 1182 aa11.74□□□□□ -0.53
NUP54-210ENST00000510884 VAC14Q08AM6 782 aa11.74□□□□□ -0.53
NUP54-210ENST00000510884 PRICKLE2Q7Z3G6 844 aa11.74□□□□□ -0.53
NUP54-210ENST00000510884 CDCA7Q9BWT1 371 aaPredicted RBP11.74□□□□□ -0.53
NUP54-210ENST00000510884 ARHGEF10LQ9HCE6 1279 aa11.74□□□□□ -0.53
NUP54-210ENST00000510884 CHIC2Q9UKJ5 165 aa11.74□□□□□ -0.53
NUP54-210ENST00000510884 GNRH1P01148 92 aa11.73□□□□□ -0.53
NUP54-210ENST00000510884 WASHC4Q2M389 1173 aa11.73□□□□□ -0.53
NUP54-210ENST00000510884 MYCP01106 439 aaPredicted RBP11.72□□□□□ -0.53
NUP54-210ENST00000510884 SV2AQ7L0J3 742 aa11.72□□□□□ -0.53
NUP54-210ENST00000510884 VWA5B2Q8N398 1253 aa11.72□□□□□ -0.53
NUP54-210ENST00000510884 NLRP3Q96P20 1036 aa11.72□□□□□ -0.53
NUP54-210ENST00000510884 COL25A1Q9BXS0 654 aaPredicted RBP11.72□□□□□ -0.53
NUP54-210ENST00000510884 GRIP2Q9C0E4 1043 aa11.72□□□□□ -0.53
NUP54-210ENST00000510884 ESF1Q9H501 851 aaKnown RBP11.72□□□□□ -0.53
NUP54-210ENST00000510884 RHOQP17081 205 aa11.71□□□□□ -0.53
NUP54-210ENST00000510884 CDC14CA4D256 554 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 SPATA31C2B4DYI2 1134 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 SLFNL1Q499Z3 407 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 CNTNAP3BQ96NU0 1288 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 CNTNAP3Q9BZ76 1288 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 DOLKQ9UPQ8 538 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 COG6Q9Y2V7 657 aa11.7□□□□□ -0.54
NUP54-210ENST00000510884 SLC27A3Q5K4L6 730 aa11.69□□□□□ -0.54
NUP54-210ENST00000510884 RNFT1Q5M7Z0 435 aa11.69□□□□□ -0.54
NUP54-210ENST00000510884 RNF135Q8IUD6 432 aa11.69□□□□□ -0.54
NUP54-210ENST00000510884 CUEDC1Q9NWM3 386 aaPredicted RBP11.69□□□□□ -0.54
NUP54-210ENST00000510884 IL2RAP01589 272 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 SOX11P35716 441 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 TSGA10IPQ3SY00 556 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 WDR44Q5JSH3 913 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 ESYT1Q9BSJ8 1104 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 RAB6BQ9NRW1 208 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 HRH3Q9Y5N1 445 aa11.68□□□□□ -0.54
NUP54-210ENST00000510884 NBPF10Q6P3W6 841 aaKnown RBP11.67□□□□□ -0.54
NUP54-210ENST00000510884 NBPF15Q8N660 670 aa11.67□□□□□ -0.54
NUP54-210ENST00000510884 DYRK1BQ9Y463 629 aa11.67□□□□□ -0.54
NUP54-210ENST00000510884 POU4F2Q12837 409 aa11.66□□□□□ -0.54
NUP54-210ENST00000510884 CNKSR1Q969H4 720 aa11.66□□□□□ -0.54
NUP54-210ENST00000510884 GMCL1Q96IK5 515 aa11.66□□□□□ -0.54
NUP54-210ENST00000510884 USP4Q13107 963 aa11.65□□□□□ -0.54
NUP54-210ENST00000510884 TRIM22Q8IYM9 498 aa11.65□□□□□ -0.54
NUP54-210ENST00000510884 ZNF837Q96EG3 531 aaPredicted RBP11.65□□□□□ -0.54
NUP54-210ENST00000510884 XAGE2Q96GT9 111 aa11.65□□□□□ -0.54
NUP54-210ENST00000510884 SLURP2P0DP57 97 aa11.63□□□□□ -0.55
NUP54-210ENST00000510884 CENPCQ03188 943 aa11.63□□□□□ -0.55
NUP54-210ENST00000510884 SEMA3FQ13275 785 aa11.63□□□□□ -0.55
NUP54-210ENST00000510884 TAS1R3Q7RTX0 852 aa11.63□□□□□ -0.55
NUP54-210ENST00000510884 FHDC1Q9C0D6 1143 aaPredicted RBP11.63□□□□□ -0.55
NUP54-210ENST00000510884 WASLO00401 505 aaPredicted RBP11.62□□□□□ -0.55
NUP54-210ENST00000510884 MAP7D1Q3KQU3 841 aa11.62□□□□□ -0.55
NUP54-210ENST00000510884 ESCO1Q5FWF5 840 aa11.62□□□□□ -0.55
NUP54-210ENST00000510884 SIRT1Q96EB6 747 aa11.62□□□□□ -0.55
NUP54-210ENST00000510884 GAS6Q14393 721 aa11.61□□□□□ -0.55
NUP54-210ENST00000510884 OXLD1Q5BKU9 147 aa11.61□□□□□ -0.55
NUP54-210ENST00000510884 PLPP7Q8NBV4 271 aa11.61□□□□□ -0.55
NUP54-210ENST00000510884 ETNK1Q9HBU6 452 aa11.61□□□□□ -0.55
NUP54-210ENST00000510884 POM121Q96HA1 1249 aa11.6□□□□□ -0.55
NUP54-210ENST00000510884 FLIIQ13045 1269 aa11.59□□□□□ -0.55
NUP54-210ENST00000510884 DBN1Q16643 649 aa11.59□□□□□ -0.55
NUP54-210ENST00000510884 ZSCAN10Q96SZ4 725 aaPredicted RBP11.59□□□□□ -0.55
NUP54-210ENST00000510884 TIMMDC1Q9NPL8 285 aa11.59□□□□□ -0.55
NUP54-210ENST00000510884 H7C1W4 665 aa11.58□□□□□ -0.56
NUP54-210ENST00000510884 ZNF385CQ66K41 422 aaPredicted RBP11.58□□□□□ -0.56
NUP54-210ENST00000510884 RIPOR1Q6ZS17 1223 aa11.58□□□□□ -0.56
NUP54-210ENST00000510884 GAS2L1Q99501 681 aaPredicted RBP11.58□□□□□ -0.56
NUP54-210ENST00000510884 ALG2Q9H553 416 aa11.58□□□□□ -0.56
NUP54-210ENST00000510884 STAU1O95793 577 aaKnown RBP11.56□□□□□ -0.56
NUP54-210ENST00000510884 F11P03951 625 aa11.56□□□□□ -0.56
NUP54-210ENST00000510884 SCNN1DP51172 638 aa11.56□□□□□ -0.56
NUP54-210ENST00000510884 SRSF11Q05519 484 aaKnown RBP11.56□□□□□ -0.56
NUP54-210ENST00000510884 WWC1Q8IX03 1113 aa11.56□□□□□ -0.56
NUP54-210ENST00000510884 PIK3CDO00329 1044 aa11.55□□□□□ -0.56
NUP54-210ENST00000510884 A0A1B0GTH6 734 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 RAD21O60216 631 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 ADAMTS2O95450 1211 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 C4orf17Q53FE4 359 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 GNASQ5JWF2 1037 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 FOXR1Q6PIV2 292 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 PPARGC1BQ86YN6 1023 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms