RNA–Protein interactions for RNA: ENST00000509637.6

RAB40C-202, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-202ENST00000509637 TUBGCP6Q96RT7 1819 aa22.45■■□□□ 1.18
RAB40C-202ENST00000509637 DOT1LQ8TEK3 1739 aa22.43■■□□□ 1.18
RAB40C-202ENST00000509637 ZCRB1Q8TBF4 217 aaKnown RBP22.43■■□□□ 1.18
RAB40C-202ENST00000509637 COL24A1Q17RW2 1714 aa22.41■■□□□ 1.18
RAB40C-202ENST00000509637 SYTL4Q96C24 671 aaPredicted RBP22.41■■□□□ 1.18
RAB40C-202ENST00000509637 CARD14Q9BXL6 1004 aa22.41■■□□□ 1.18
RAB40C-202ENST00000509637 LY75O60449 1722 aa22.4■■□□□ 1.18
RAB40C-202ENST00000509637 HSP90AB2PQ58FF8 381 aa22.4■■□□□ 1.18
RAB40C-202ENST00000509637 SLC27A3Q5K4L6 730 aa22.4■■□□□ 1.18
RAB40C-202ENST00000509637 ZNF784Q8NCA9 323 aaPredicted RBP22.4■■□□□ 1.18
RAB40C-202ENST00000509637 DCAF8L1A6NGE4 600 aa22.39■■□□□ 1.17
RAB40C-202ENST00000509637 QSER1Q2KHR3 1735 aa22.39■■□□□ 1.17
RAB40C-202ENST00000509637 USP47Q96K76 1375 aa22.38■■□□□ 1.17
RAB40C-202ENST00000509637 MAP3K5Q99683 1374 aa22.38■■□□□ 1.17
RAB40C-202ENST00000509637 UTRNP46939 3433 aa22.36■■□□□ 1.17
RAB40C-202ENST00000509637 RTL1A6NKG5 1358 aa22.36■■□□□ 1.17
RAB40C-202ENST00000509637 TMF1P82094 1093 aa22.34■■□□□ 1.17
RAB40C-202ENST00000509637 COL23A1Q86Y22 540 aaPredicted RBP22.34■■□□□ 1.17
RAB40C-202ENST00000509637 NLGN2Q8NFZ4 835 aa22.34■■□□□ 1.17
RAB40C-202ENST00000509637 SLC16A10Q8TF71 515 aa22.34■■□□□ 1.17
RAB40C-202ENST00000509637 CYP27B1O15528 508 aa22.33■■□□□ 1.17
RAB40C-202ENST00000509637 TFCP2L1Q9NZI6 479 aa22.33■■□□□ 1.17
RAB40C-202ENST00000509637 EMILIN1Q9Y6C2 1016 aa22.33■■□□□ 1.17
RAB40C-202ENST00000509637 CHD4Q14839 1912 aa22.32■■□□□ 1.16
RAB40C-202ENST00000509637 AMIGO3Q86WK7 504 aa22.32■■□□□ 1.16
RAB40C-202ENST00000509637 CCNL1Q9UK58 526 aaPredicted RBP22.32■■□□□ 1.16
RAB40C-202ENST00000509637 INSRP06213 1382 aa22.32■■□□□ 1.16
RAB40C-202ENST00000509637 SMIM5Q71RC9 77 aa22.3■■□□□ 1.16
RAB40C-202ENST00000509637 KIF20BQ96Q89 1820 aa22.29■■□□□ 1.16
RAB40C-202ENST00000509637 SLC24A1O60721 1099 aa22.29■■□□□ 1.16
RAB40C-202ENST00000509637 TOGARAM1Q9Y4F4 1720 aa22.28■■□□□ 1.16
RAB40C-202ENST00000509637 KLHL34Q8N239 644 aa22.28■■□□□ 1.16
RAB40C-202ENST00000509637 RAPGEF4Q8WZA2 1011 aa22.28■■□□□ 1.16
RAB40C-202ENST00000509637 TATP17735 454 aaPredicted RBP22.27■■□□□ 1.16
RAB40C-202ENST00000509637 FLT4P35916 1363 aa22.26■■□□□ 1.15
RAB40C-202ENST00000509637 TRIM26Q12899 539 aaPredicted RBP22.26■■□□□ 1.15
RAB40C-202ENST00000509637 MSL1Q68DK7 614 aa22.26■■□□□ 1.15
RAB40C-202ENST00000509637 CGNL1Q0VF96 1302 aa22.26■■□□□ 1.15
RAB40C-202ENST00000509637 NCAPD2Q15021 1401 aa22.25■■□□□ 1.15
RAB40C-202ENST00000509637 NSD3Q9BZ95 1437 aa22.25■■□□□ 1.15
RAB40C-202ENST00000509637 YBX3P16989 372 aaKnown RBP eCLIP22.25■■□□□ 1.15
RAB40C-202ENST00000509637 GPR162Q16538 588 aa22.25■■□□□ 1.15
RAB40C-202ENST00000509637 POLD1P28340 1107 aa22.24■■□□□ 1.15
RAB40C-202ENST00000509637 ITGB4P16144 1822 aa22.24■■□□□ 1.15
RAB40C-202ENST00000509637 TAF1LQ8IZX4 1826 aa22.24■■□□□ 1.15
RAB40C-202ENST00000509637 MPRIPQ6WCQ1 1025 aa22.23■■□□□ 1.15
RAB40C-202ENST00000509637 PIGBQ92521 554 aa22.22■■□□□ 1.15
RAB40C-202ENST00000509637 PCDH11XQ9BZA7 1347 aa22.22■■□□□ 1.15
RAB40C-202ENST00000509637 PCDH11YQ9BZA8 1340 aa22.22■■□□□ 1.15
RAB40C-202ENST00000509637 KIF24Q5T7B8 1368 aa22.22■■□□□ 1.15
RAB40C-202ENST00000509637 PALLDQ8WX93 1383 aa22.22■■□□□ 1.15
RAB40C-202ENST00000509637 C5P01031 1676 aa22.21■■□□□ 1.15
RAB40C-202ENST00000509637 PKD1L3Q7Z443 1732 aa22.21■■□□□ 1.15
RAB40C-202ENST00000509637 EYA1Q99502 592 aa22.21■■□□□ 1.15
RAB40C-202ENST00000509637 SMG6Q86US8 1419 aaKnown RBP22.21■■□□□ 1.15
RAB40C-202ENST00000509637 MSH5O43196 834 aa22.2■■□□□ 1.14
RAB40C-202ENST00000509637 NKX1-1Q15270 411 aaPredicted RBP22.2■■□□□ 1.14
RAB40C-202ENST00000509637 PELP1Q8IZL8 1130 aaKnown RBP22.2■■□□□ 1.14
RAB40C-202ENST00000509637 MAP2P11137 1827 aaKnown RBP22.2■■□□□ 1.14
RAB40C-202ENST00000509637 POLKQ9UBT6 870 aa22.19■■□□□ 1.14
RAB40C-202ENST00000509637 ANKRD26Q9UPS8 1709 aa22.19■■□□□ 1.14
RAB40C-202ENST00000509637 WASHC2AQ641Q2 1341 aa22.18■■□□□ 1.14
RAB40C-202ENST00000509637 PPM1GO15355 546 aaPredicted RBP22.18■■□□□ 1.14
RAB40C-202ENST00000509637 CDCA8Q53HL2 280 aa22.17■■□□□ 1.14
RAB40C-202ENST00000509637 C4BP0C0L5 1744 aa22.15■■□□□ 1.14
RAB40C-202ENST00000509637 C1QTNF8P60827 252 aa22.15■■□□□ 1.14
RAB40C-202ENST00000509637 LINC00116Q8NCU8 138 aa22.15■■□□□ 1.14
RAB40C-202ENST00000509637 GOLGB1Q14789 3259 aaKnown RBP22.15■■□□□ 1.14
RAB40C-202ENST00000509637 UBR3Q6ZT12 1888 aa22.14■■□□□ 1.13
RAB40C-202ENST00000509637 ITPK1Q13572 414 aa22.14■■□□□ 1.13
RAB40C-202ENST00000509637 ASAP1Q9ULH1 1129 aa22.14■■□□□ 1.13
RAB40C-202ENST00000509637 EIF4A2Q14240 407 aaKnown RBP22.12■■□□□ 1.13
RAB40C-202ENST00000509637 LOC102724428A0A0B4J2F2 783 aa22.1■■□□□ 1.13
RAB40C-202ENST00000509637 PHKG2P15735 406 aa22.1■■□□□ 1.13
RAB40C-202ENST00000509637 TNNT2P45379 298 aaPredicted RBP22.1■■□□□ 1.13
RAB40C-202ENST00000509637 SIK1P57059 783 aa22.1■■□□□ 1.13
RAB40C-202ENST00000509637 SMARCC1Q92922 1105 aaPredicted RBP22.1■■□□□ 1.13
RAB40C-202ENST00000509637 SLC4A9Q96Q91 983 aa22.1■■□□□ 1.13
RAB40C-202ENST00000509637 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.09■■□□□ 1.13
RAB40C-202ENST00000509637 PHF14O94880 888 aa22.09■■□□□ 1.13
RAB40C-202ENST00000509637 ATG3Q9NT62 314 aa22.09■■□□□ 1.13
RAB40C-202ENST00000509637 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.08■■□□□ 1.13
RAB40C-202ENST00000509637 SPG7Q9UQ90 795 aa22.08■■□□□ 1.13
RAB40C-202ENST00000509637 CD2APQ9Y5K6 639 aa22.08■■□□□ 1.13
RAB40C-202ENST00000509637 SENP3-EIF4A1A0A087X0R7 540 aa22.07■■□□□ 1.12
RAB40C-202ENST00000509637 POLR3GLQ9BT43 218 aa22.07■■□□□ 1.12
RAB40C-202ENST00000509637 WWC3Q9ULE0 1092 aa22.07■■□□□ 1.12
RAB40C-202ENST00000509637 FLAD1Q8NFF5 587 aa22.06■■□□□ 1.12
RAB40C-202ENST00000509637 AK7Q96M32 723 aa22.06■■□□□ 1.12
RAB40C-202ENST00000509637 TIMELESSQ9UNS1 1208 aa22.06■■□□□ 1.12
RAB40C-202ENST00000509637 GRIN3BO60391 1043 aa22.04■■□□□ 1.12
RAB40C-202ENST00000509637 HSPA5P11021 654 aaKnown RBP22.04■■□□□ 1.12
RAB40C-202ENST00000509637 IFNL2Q8IZJ0 200 aa22.04■■□□□ 1.12
RAB40C-202ENST00000509637 PCGF6Q9BYE7 350 aa22.04■■□□□ 1.12
RAB40C-202ENST00000509637 PANK3Q9H999 370 aa22.04■■□□□ 1.12
RAB40C-202ENST00000509637 TMOD3Q9NYL9 352 aa22.04■■□□□ 1.12
RAB40C-202ENST00000509637 IGSF1Q8N6C5 1336 aa22.03■■□□□ 1.12
RAB40C-202ENST00000509637 SSFA2P28290 1259 aa22.02■■□□□ 1.12
RAB40C-202ENST00000509637 ATP6V1AP38606 617 aa22.02■■□□□ 1.12
RAB40C-202ENST00000509637 KDRP35968 1356 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms