RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 OVOS2A0A0G2JMS6 1433 aa12.28□□□□□ -0.44
NUP54-207ENST00000508583 NCAPD2Q15021 1401 aa12.28□□□□□ -0.44
NUP54-207ENST00000508583 PPP2R1AP30153 589 aa12.27□□□□□ -0.45
NUP54-207ENST00000508583 SF3B2Q13435 895 aaKnown RBP12.27□□□□□ -0.45
NUP54-207ENST00000508583 UPF1Q92900 1129 aaKnown RBP eCLIP12.27□□□□□ -0.45
NUP54-207ENST00000508583 EYA1Q99502 592 aa12.27□□□□□ -0.45
NUP54-207ENST00000508583 IGSF1Q8N6C5 1336 aa12.27□□□□□ -0.45
NUP54-207ENST00000508583 ZCRB1Q8TBF4 217 aaKnown RBP12.26□□□□□ -0.45
NUP54-207ENST00000508583 IL13P35225 146 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 USHBP1Q8N6Y0 703 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.25□□□□□ -0.45
NUP54-207ENST00000508583 SPG7Q9UQ90 795 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 MYBBP1AQ9BQG0 1328 aaKnown RBP12.25□□□□□ -0.45
NUP54-207ENST00000508583 PCDH11XQ9BZA7 1347 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 PCDH11YQ9BZA8 1340 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 BCL9O00512 1426 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 SHANK3Q9BYB0 1731 aa12.25□□□□□ -0.45
NUP54-207ENST00000508583 TNS1Q9HBL0 1735 aaKnown RBP12.25□□□□□ -0.45
NUP54-207ENST00000508583 MEGF6O75095 1541 aa12.24□□□□□ -0.45
NUP54-207ENST00000508583 RGPD1P0DJD0 1748 aa12.24□□□□□ -0.45
NUP54-207ENST00000508583 COL3A1P02461 1466 aaPredicted RBP12.23□□□□□ -0.45
NUP54-207ENST00000508583 KDRP35968 1356 aa12.23□□□□□ -0.45
NUP54-207ENST00000508583 ANP32CO43423 234 aa12.23□□□□□ -0.45
NUP54-207ENST00000508583 AMOTQ4VCS5 1084 aa12.23□□□□□ -0.45
NUP54-207ENST00000508583 U2SURPO15042 1029 aaKnown RBP12.22□□□□□ -0.45
NUP54-207ENST00000508583 PLEKHO1Q53GL0 409 aaPredicted RBP12.22□□□□□ -0.45
NUP54-207ENST00000508583 SULT6B1Q6IMI4 303 aa12.22□□□□□ -0.45
NUP54-207ENST00000508583 PRKRIP1Q9H875 184 aaPredicted RBP12.22□□□□□ -0.45
NUP54-207ENST00000508583 PKD1L3Q7Z443 1732 aa12.22□□□□□ -0.45
NUP54-207ENST00000508583 NEFMP07197 916 aa12.21□□□□□ -0.45
NUP54-207ENST00000508583 MARCH10Q8NA82 808 aaPredicted RBP12.21□□□□□ -0.45
NUP54-207ENST00000508583 DDX54Q8TDD1 881 aaKnown RBP12.21□□□□□ -0.45
NUP54-207ENST00000508583 PNNQ9H307 717 aaKnown RBP12.21□□□□□ -0.45
NUP54-207ENST00000508583 SBF2Q86WG5 1849 aa12.21□□□□□ -0.46
NUP54-207ENST00000508583 HSP90AB1P08238 724 aaKnown RBP12.2□□□□□ -0.46
NUP54-207ENST00000508583 U2AF1L5P0DN76 240 aaPredicted RBP12.19□□□□□ -0.46
NUP54-207ENST00000508583 BAG6P46379 1132 aa12.19□□□□□ -0.46
NUP54-207ENST00000508583 U2AF1Q01081 240 aaKnown RBP eCLIP12.19□□□□□ -0.46
NUP54-207ENST00000508583 C1orf141Q5JVX7 400 aa12.19□□□□□ -0.46
NUP54-207ENST00000508583 IFNL2Q8IZJ0 200 aa12.19□□□□□ -0.46
NUP54-207ENST00000508583 DOT1LQ8TEK3 1739 aa12.18□□□□□ -0.46
NUP54-207ENST00000508583 FCHSD2O94868 740 aa12.18□□□□□ -0.46
NUP54-207ENST00000508583 TRIM37O94972 964 aa12.18□□□□□ -0.46
NUP54-207ENST00000508583 HMOX1P09601 288 aa12.18□□□□□ -0.46
NUP54-207ENST00000508583 BCL11BQ9C0K0 894 aaPredicted RBP12.18□□□□□ -0.46
NUP54-207ENST00000508583 NHSQ6T4R5 1651 aa12.18□□□□□ -0.46
NUP54-207ENST00000508583 KAT6BQ8WYB5 2073 aa12.18□□□□□ -0.46
NUP54-207ENST00000508583 AEBP1Q8IUX7 1158 aa12.17□□□□□ -0.46
NUP54-207ENST00000508583 HMGB2P26583 209 aaKnown RBP12.16□□□□□ -0.46
NUP54-207ENST00000508583 WDR43Q15061 677 aaKnown RBP eCLIP12.16□□□□□ -0.46
NUP54-207ENST00000508583 ZNF530Q6P9A1 599 aaPredicted RBP12.16□□□□□ -0.46
NUP54-207ENST00000508583 GAS2L2Q8NHY3 880 aa12.16□□□□□ -0.46
NUP54-207ENST00000508583 APBA3O96018 575 aa12.15□□□□□ -0.46
NUP54-207ENST00000508583 PHKG2P15735 406 aa12.15□□□□□ -0.46
NUP54-207ENST00000508583 NKX1-1Q15270 411 aaPredicted RBP12.15□□□□□ -0.46
NUP54-207ENST00000508583 DEFB132Q7Z7B7 95 aa12.15□□□□□ -0.46
NUP54-207ENST00000508583 DCAF5Q96JK2 942 aa12.15□□□□□ -0.46
NUP54-207ENST00000508583 CYP27B1O15528 508 aa12.14□□□□□ -0.47
NUP54-207ENST00000508583 PRKAR2BP31323 418 aa12.14□□□□□ -0.47
NUP54-207ENST00000508583 AKAP4Q5JQC9 854 aa12.14□□□□□ -0.47
NUP54-207ENST00000508583 SYTL4Q96C24 671 aaPredicted RBP12.14□□□□□ -0.47
NUP54-207ENST00000508583 RSPH6AQ9H0K4 717 aa12.14□□□□□ -0.47
NUP54-207ENST00000508583 RNF216Q9NWF9 866 aaPredicted RBP12.14□□□□□ -0.47
NUP54-207ENST00000508583 RGPD3A6NKT7 1758 aaPredicted RBP12.14□□□□□ -0.47
NUP54-207ENST00000508583 RGPD4Q7Z3J3 1758 aa12.14□□□□□ -0.47
NUP54-207ENST00000508583 TOGARAM1Q9Y4F4 1720 aa12.14□□□□□ -0.47
NUP54-207ENST00000508583 MAPK8IP3Q9UPT6 1336 aa12.13□□□□□ -0.47
NUP54-207ENST00000508583 PTF1AQ7RTS3 328 aa12.13□□□□□ -0.47
NUP54-207ENST00000508583 ACSBG1Q96GR2 724 aa12.13□□□□□ -0.47
NUP54-207ENST00000508583 BTAF1O14981 1849 aa12.13□□□□□ -0.47
NUP54-207ENST00000508583 RREB1Q92766 1687 aa12.13□□□□□ -0.47
NUP54-207ENST00000508583 ERVV-2B6SEH9 535 aa12.12□□□□□ -0.47
NUP54-207ENST00000508583 PLSCR1O15162 318 aa12.12□□□□□ -0.47
NUP54-207ENST00000508583 PRIM1P49642 420 aaKnown RBP12.12□□□□□ -0.47
NUP54-207ENST00000508583 NUP188Q5SRE5 1749 aa12.11□□□□□ -0.47
NUP54-207ENST00000508583 KCNQ2O43526 872 aa12.11□□□□□ -0.47
NUP54-207ENST00000508583 EN1Q05925 392 aaPredicted RBP12.11□□□□□ -0.47
NUP54-207ENST00000508583 TMOD3Q9NYL9 352 aa12.11□□□□□ -0.47
NUP54-207ENST00000508583 MAP3K5Q99683 1374 aa12.1□□□□□ -0.47
NUP54-207ENST00000508583 MTHFSDQ2M296 383 aaKnown RBP12.1□□□□□ -0.47
NUP54-207ENST00000508583 SMARCC1Q92922 1105 aaPredicted RBP12.1□□□□□ -0.47
NUP54-207ENST00000508583 GNAT3A8MTJ3 354 aa12.09□□□□□ -0.47
NUP54-207ENST00000508583 CABP4P57796 275 aa12.09□□□□□ -0.47
NUP54-207ENST00000508583 MPRIPQ6WCQ1 1025 aa12.09□□□□□ -0.47
NUP54-207ENST00000508583 RTF1Q92541 710 aaKnown RBP12.09□□□□□ -0.47
NUP54-207ENST00000508583 MRS2Q9HD23 443 aa12.09□□□□□ -0.47
NUP54-207ENST00000508583 ITGB4P16144 1822 aa12.09□□□□□ -0.47
NUP54-207ENST00000508583 HTATSF1O43719 755 aaKnown RBP12.08□□□□□ -0.48
NUP54-207ENST00000508583 EZH2Q15910 746 aaKnown RBP12.08□□□□□ -0.48
NUP54-207ENST00000508583 SLC27A3Q5K4L6 730 aa12.08□□□□□ -0.48
NUP54-207ENST00000508583 CAMKK2Q96RR4 588 aa12.08□□□□□ -0.48
NUP54-207ENST00000508583 SCN11AQ9UI33 1791 aa12.07□□□□□ -0.48
NUP54-207ENST00000508583 KDM6AO15550 1401 aaPredicted RBP12.07□□□□□ -0.48
NUP54-207ENST00000508583 LMOD3Q0VAK6 560 aa12.07□□□□□ -0.48
NUP54-207ENST00000508583 RNMTO43148 476 aaKnown RBP12.06□□□□□ -0.48
NUP54-207ENST00000508583 NBPF14Q5TI25 921 aa12.06□□□□□ -0.48
NUP54-207ENST00000508583 DIEXFQ68CQ4 756 aaKnown RBP12.06□□□□□ -0.48
NUP54-207ENST00000508583 RUNDC1Q96C34 613 aa12.06□□□□□ -0.48
NUP54-207ENST00000508583 PHACTR3Q96KR7 559 aa12.06□□□□□ -0.48
NUP54-207ENST00000508583 PLEKHF1Q96S99 279 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 177.4 ms