RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 ACSBG1Q96GR2 724 aa17.99■□□□□ 0.47
TCOF1-209ENST00000506630 SGIP1Q9BQI5 828 aa17.99■□□□□ 0.47
TCOF1-209ENST00000506630 RTL1A6NKG5 1358 aa17.99■□□□□ 0.47
TCOF1-209ENST00000506630 IP6K1Q92551 441 aa17.98■□□□□ 0.47
TCOF1-209ENST00000506630 NLRP2Q9NX02 1062 aa17.98■□□□□ 0.47
TCOF1-209ENST00000506630 NSD2O96028 1365 aa17.97■□□□□ 0.47
TCOF1-209ENST00000506630 SENP3-EIF4A1A0A087X0R7 540 aa17.97■□□□□ 0.47
TCOF1-209ENST00000506630 HOXC9P31274 260 aa17.97■□□□□ 0.47
TCOF1-209ENST00000506630 LTV1Q96GA3 475 aaPredicted RBP17.97■□□□□ 0.47
TCOF1-209ENST00000506630 KNSTRNQ9Y448 316 aa17.97■□□□□ 0.47
TCOF1-209ENST00000506630 IL2RBP14784 551 aa17.95■□□□□ 0.46
TCOF1-209ENST00000506630 C1QTNF8P60827 252 aa17.95■□□□□ 0.46
TCOF1-209ENST00000506630 FLT4P35916 1363 aa17.94■□□□□ 0.46
TCOF1-209ENST00000506630 MAP3K5Q99683 1374 aa17.94■□□□□ 0.46
TCOF1-209ENST00000506630 TNNT2P45379 298 aaPredicted RBP17.94■□□□□ 0.46
TCOF1-209ENST00000506630 GPR162Q16538 588 aa17.94■□□□□ 0.46
TCOF1-209ENST00000506630 SMG6Q86US8 1419 aaKnown RBP17.94■□□□□ 0.46
TCOF1-209ENST00000506630 EMILIN1Q9Y6C2 1016 aa17.93■□□□□ 0.46
TCOF1-209ENST00000506630 KAT6BQ8WYB5 2073 aa17.93■□□□□ 0.46
TCOF1-209ENST00000506630 KIF24Q5T7B8 1368 aa17.92■□□□□ 0.46
TCOF1-209ENST00000506630 SLC16A10Q8TF71 515 aa17.92■□□□□ 0.46
TCOF1-209ENST00000506630 NHSQ6T4R5 1651 aa17.91■□□□□ 0.46
TCOF1-209ENST00000506630 PPM1GO15355 546 aaPredicted RBP17.91■□□□□ 0.46
TCOF1-209ENST00000506630 POLD1P28340 1107 aa17.91■□□□□ 0.46
TCOF1-209ENST00000506630 INSRP06213 1382 aa17.91■□□□□ 0.46
TCOF1-209ENST00000506630 ZNF827Q17R98 1081 aa17.9■□□□□ 0.46
TCOF1-209ENST00000506630 MORC1Q86VD1 984 aa17.9■□□□□ 0.46
TCOF1-209ENST00000506630 KLHL34Q8N239 644 aa17.9■□□□□ 0.46
TCOF1-209ENST00000506630 ZEB1P37275 1124 aaPredicted RBP17.89■□□□□ 0.45
TCOF1-209ENST00000506630 HSP90AB2PQ58FF8 381 aa17.89■□□□□ 0.45
TCOF1-209ENST00000506630 AMER1Q5JTC6 1135 aaPredicted RBP17.89■□□□□ 0.45
TCOF1-209ENST00000506630 LRRC4BQ9NT99 713 aa17.89■□□□□ 0.45
TCOF1-209ENST00000506630 SLC27A3Q5K4L6 730 aa17.88■□□□□ 0.45
TCOF1-209ENST00000506630 PELP1Q8IZL8 1130 aaKnown RBP17.88■□□□□ 0.45
TCOF1-209ENST00000506630 SHANK3Q9BYB0 1731 aa17.87■□□□□ 0.45
TCOF1-209ENST00000506630 USHBP1Q8N6Y0 703 aa17.87■□□□□ 0.45
TCOF1-209ENST00000506630 POLKQ9UBT6 870 aa17.87■□□□□ 0.45
TCOF1-209ENST00000506630 CHD4Q14839 1912 aa17.87■□□□□ 0.45
TCOF1-209ENST00000506630 PAPPAQ13219 1627 aa17.87■□□□□ 0.45
TCOF1-209ENST00000506630 PER1O15534 1290 aaPredicted RBP17.86■□□□□ 0.45
TCOF1-209ENST00000506630 GIGYF1O75420 1035 aaPredicted RBP17.86■□□□□ 0.45
TCOF1-209ENST00000506630 CC2D1BQ5T0F9 858 aaKnown RBP17.86■□□□□ 0.45
TCOF1-209ENST00000506630 NBPF6Q5VWK0 638 aa17.86■□□□□ 0.45
TCOF1-209ENST00000506630 DDX54Q8TDD1 881 aaKnown RBP17.86■□□□□ 0.45
TCOF1-209ENST00000506630 AKT1S1Q96B36 256 aa17.86■□□□□ 0.45
TCOF1-209ENST00000506630 NBPF4Q96M43 638 aa17.86■□□□□ 0.45
TCOF1-209ENST00000506630 TFCP2L1Q9NZI6 479 aa17.86■□□□□ 0.45
TCOF1-209ENST00000506630 CNGB1Q14028 1251 aaPredicted RBP17.85■□□□□ 0.45
TCOF1-209ENST00000506630 MEGF6O75095 1541 aa17.84■□□□□ 0.45
TCOF1-209ENST00000506630 SYTL4Q96C24 671 aaPredicted RBP17.84■□□□□ 0.45
TCOF1-209ENST00000506630 BTAF1O14981 1849 aa17.84■□□□□ 0.45
TCOF1-209ENST00000506630 PNPLA7Q6ZV29 1317 aa17.83■□□□□ 0.44
TCOF1-209ENST00000506630 NPC1L1Q9UHC9 1359 aa17.81■□□□□ 0.44
TCOF1-209ENST00000506630 PKD1L3Q7Z443 1732 aa17.81■□□□□ 0.44
TCOF1-209ENST00000506630 UTRNP46939 3433 aa17.81■□□□□ 0.44
TCOF1-209ENST00000506630 PRIM1P49642 420 aaKnown RBP17.8■□□□□ 0.44
TCOF1-209ENST00000506630 DOT1LQ8TEK3 1739 aa17.8■□□□□ 0.44
TCOF1-209ENST00000506630 GRIN3BO60391 1043 aa17.79■□□□□ 0.44
TCOF1-209ENST00000506630 KCNQ4P56696 695 aa17.79■□□□□ 0.44
TCOF1-209ENST00000506630 MSH5O43196 834 aa17.78■□□□□ 0.44
TCOF1-209ENST00000506630 EIF4A2Q14240 407 aaKnown RBP17.78■□□□□ 0.44
TCOF1-209ENST00000506630 NLGN2Q8NFZ4 835 aa17.78■□□□□ 0.44
TCOF1-209ENST00000506630 RAPGEF4Q8WZA2 1011 aa17.78■□□□□ 0.44
TCOF1-209ENST00000506630 NCAPD2Q15021 1401 aa17.78■□□□□ 0.44
TCOF1-209ENST00000506630 TATP17735 454 aaPredicted RBP17.77■□□□□ 0.44
TCOF1-209ENST00000506630 CCNL1Q9UK58 526 aaPredicted RBP17.77■□□□□ 0.44
TCOF1-209ENST00000506630 ZCRB1Q8TBF4 217 aaKnown RBP17.76■□□□□ 0.43
TCOF1-209ENST00000506630 EYA1Q99502 592 aa17.76■□□□□ 0.43
TCOF1-209ENST00000506630 MTHFSP49914 203 aa17.74■□□□□ 0.43
TCOF1-209ENST00000506630 QSER1Q2KHR3 1735 aa17.74■□□□□ 0.43
TCOF1-209ENST00000506630 HMGB2P26583 209 aaKnown RBP17.73■□□□□ 0.43
TCOF1-209ENST00000506630 IFFO2Q5TF58 517 aa17.73■□□□□ 0.43
TCOF1-209ENST00000506630 ITGB4P16144 1822 aa17.72■□□□□ 0.43
TCOF1-209ENST00000506630 YBX3P16989 372 aaKnown RBP eCLIP17.72■□□□□ 0.43
TCOF1-209ENST00000506630 IGSF1Q8N6C5 1336 aa17.72■□□□□ 0.43
TCOF1-209ENST00000506630 VIRMAQ69YN4 1812 aaKnown RBP17.71■□□□□ 0.43
TCOF1-209ENST00000506630 COL23A1Q86Y22 540 aaPredicted RBP17.71■□□□□ 0.43
TCOF1-209ENST00000506630 PCDH11XQ9BZA7 1347 aa17.71■□□□□ 0.42
TCOF1-209ENST00000506630 PCDH11YQ9BZA8 1340 aa17.71■□□□□ 0.42
TCOF1-209ENST00000506630 COL24A1Q17RW2 1714 aa17.7■□□□□ 0.42
TCOF1-209ENST00000506630 TOGARAM1Q9Y4F4 1720 aa17.7■□□□□ 0.42
TCOF1-209ENST00000506630 CYP27B1O15528 508 aa17.7■□□□□ 0.42
TCOF1-209ENST00000506630 DDX10Q13206 875 aaKnown RBP17.7■□□□□ 0.42
TCOF1-209ENST00000506630 LY75O60449 1722 aa17.69■□□□□ 0.42
TCOF1-209ENST00000506630 IL13P35225 146 aa17.69■□□□□ 0.42
TCOF1-209ENST00000506630 MSL1Q68DK7 614 aa17.69■□□□□ 0.42
TCOF1-209ENST00000506630 FLAD1Q8NFF5 587 aa17.69■□□□□ 0.42
TCOF1-209ENST00000506630 TUBGCP6Q96RT7 1819 aa17.69■□□□□ 0.42
TCOF1-209ENST00000506630 COL3A1P02461 1466 aaPredicted RBP17.69■□□□□ 0.42
TCOF1-209ENST00000506630 CD2APQ9Y5K6 639 aa17.68■□□□□ 0.42
TCOF1-209ENST00000506630 GPBP1L1Q9HC44 474 aaPredicted RBP17.67■□□□□ 0.42
TCOF1-209ENST00000506630 ATP10DQ9P241 1426 aa17.66■□□□□ 0.42
TCOF1-209ENST00000506630 DIAPH1O60610 1272 aaKnown RBP17.66■□□□□ 0.42
TCOF1-209ENST00000506630 SULT6B1Q6IMI4 303 aa17.66■□□□□ 0.42
TCOF1-209ENST00000506630 AEBP1Q8IUX7 1158 aa17.66■□□□□ 0.42
TCOF1-209ENST00000506630 SPG7Q9UQ90 795 aa17.66■□□□□ 0.42
TCOF1-209ENST00000506630 PPP2R1AP30153 589 aa17.65■□□□□ 0.42
TCOF1-209ENST00000506630 CFAP53Q96M91 514 aa17.64■□□□□ 0.41
TCOF1-209ENST00000506630 KDRP35968 1356 aa17.64■□□□□ 0.41
TCOF1-209ENST00000506630 PLEKHG2Q9H7P9 1386 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms