RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 CNGB1Q14028 1251 aaPredicted RBP16.68■□□□□ 0.26
SNCA-208ENST00000505199 PNNQ9H307 717 aaKnown RBP16.68■□□□□ 0.26
SNCA-208ENST00000505199 PCDH11XQ9BZA7 1347 aa16.68■□□□□ 0.26
SNCA-208ENST00000505199 PCDH11YQ9BZA8 1340 aa16.68■□□□□ 0.26
SNCA-208ENST00000505199 FAM196AQ6ZSG2 479 aa16.67■□□□□ 0.26
SNCA-208ENST00000505199 ZCRB1Q8TBF4 217 aaKnown RBP16.67■□□□□ 0.26
SNCA-208ENST00000505199 SPG7Q9UQ90 795 aa16.67■□□□□ 0.26
SNCA-208ENST00000505199 SULT6B1Q6IMI4 303 aa16.66■□□□□ 0.26
SNCA-208ENST00000505199 CCDC125Q86Z20 511 aa16.66■□□□□ 0.26
SNCA-208ENST00000505199 ILDR2Q71H61 639 aa16.65■□□□□ 0.26
SNCA-208ENST00000505199 SHANK3Q9BYB0 1731 aa16.65■□□□□ 0.26
SNCA-208ENST00000505199 PLEKHO1Q53GL0 409 aaPredicted RBP16.64■□□□□ 0.25
SNCA-208ENST00000505199 USHBP1Q8N6Y0 703 aa16.64■□□□□ 0.25
SNCA-208ENST00000505199 U2SURPO15042 1029 aaKnown RBP16.62■□□□□ 0.25
SNCA-208ENST00000505199 HSP90AB1P08238 724 aaKnown RBP16.62■□□□□ 0.25
SNCA-208ENST00000505199 NKX1-1Q15270 411 aaPredicted RBP16.62■□□□□ 0.25
SNCA-208ENST00000505199 U2AF1L5P0DN76 240 aaPredicted RBP16.61■□□□□ 0.25
SNCA-208ENST00000505199 U2AF1Q01081 240 aaKnown RBP eCLIP16.61■□□□□ 0.25
SNCA-208ENST00000505199 AEBP1Q8IUX7 1158 aa16.61■□□□□ 0.25
SNCA-208ENST00000505199 MARCH10Q8NA82 808 aaPredicted RBP16.61■□□□□ 0.25
SNCA-208ENST00000505199 RSPH6AQ9H0K4 717 aa16.61■□□□□ 0.25
SNCA-208ENST00000505199 EP400Q96L91 3159 aa16.6■□□□□ 0.25
SNCA-208ENST00000505199 NEFMP07197 916 aa16.6■□□□□ 0.25
SNCA-208ENST00000505199 IFNL2Q8IZJ0 200 aa16.6■□□□□ 0.25
SNCA-208ENST00000505199 DIEXFQ68CQ4 756 aaKnown RBP16.59■□□□□ 0.25
SNCA-208ENST00000505199 GAS2L2Q8NHY3 880 aa16.59■□□□□ 0.25
SNCA-208ENST00000505199 HMOX1P09601 288 aa16.58■□□□□ 0.24
SNCA-208ENST00000505199 WDR43Q15061 677 aaKnown RBP eCLIP16.58■□□□□ 0.24
SNCA-208ENST00000505199 SBF2Q86WG5 1849 aa16.58■□□□□ 0.24
SNCA-208ENST00000505199 CCER2I3L3R5 266 aa16.57■□□□□ 0.24
SNCA-208ENST00000505199 CYP27B1O15528 508 aa16.57■□□□□ 0.24
SNCA-208ENST00000505199 DCAF5Q96JK2 942 aa16.57■□□□□ 0.24
SNCA-208ENST00000505199 NHSQ6T4R5 1651 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 SOCS7O14512 581 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 PHKG2P15735 406 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 PRKAR2BP31323 418 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 AKAP4Q5JQC9 854 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 C1orf141Q5JVX7 400 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 DDX54Q8TDD1 881 aaKnown RBP16.56■□□□□ 0.24
SNCA-208ENST00000505199 RGPD3A6NKT7 1758 aaPredicted RBP16.56■□□□□ 0.24
SNCA-208ENST00000505199 RGPD4Q7Z3J3 1758 aa16.56■□□□□ 0.24
SNCA-208ENST00000505199 PLEKHF1Q96S99 279 aa16.55■□□□□ 0.24
SNCA-208ENST00000505199 BCL11BQ9C0K0 894 aaPredicted RBP16.55■□□□□ 0.24
SNCA-208ENST00000505199 ADAMTS7Q9UKP4 1686 aa16.55■□□□□ 0.24
SNCA-208ENST00000505199 HTATSF1O43719 755 aaKnown RBP16.54■□□□□ 0.24
SNCA-208ENST00000505199 HMGB2P26583 209 aaKnown RBP16.54■□□□□ 0.24
SNCA-208ENST00000505199 ZNF530Q6P9A1 599 aaPredicted RBP16.54■□□□□ 0.24
SNCA-208ENST00000505199 PNISRQ8TF01 805 aaKnown RBP16.54■□□□□ 0.24
SNCA-208ENST00000505199 MRS2Q9HD23 443 aa16.54■□□□□ 0.24
SNCA-208ENST00000505199 ERVV-2B6SEH9 535 aa16.53■□□□□ 0.24
SNCA-208ENST00000505199 NCBP3Q53F19 620 aaKnown RBP16.53■□□□□ 0.24
SNCA-208ENST00000505199 UPF1Q92900 1129 aaKnown RBP eCLIP16.53■□□□□ 0.24
SNCA-208ENST00000505199 MAPK8IP3Q9UPT6 1336 aa16.52■□□□□ 0.24
SNCA-208ENST00000505199 SF3B2Q13435 895 aaKnown RBP16.52■□□□□ 0.24
SNCA-208ENST00000505199 MTHFSDQ2M296 383 aaKnown RBP16.52■□□□□ 0.24
SNCA-208ENST00000505199 TNS1Q9HBL0 1735 aaKnown RBP16.52■□□□□ 0.24
SNCA-208ENST00000505199 SCN11AQ9UI33 1791 aa16.51■□□□□ 0.23
SNCA-208ENST00000505199 DOT1LQ8TEK3 1739 aa16.51■□□□□ 0.23
SNCA-208ENST00000505199 RUNDC1Q96C34 613 aa16.51■□□□□ 0.23
SNCA-208ENST00000505199 ADAMTS8Q9UP79 889 aa16.51■□□□□ 0.23
SNCA-208ENST00000505199 MAP3K5Q99683 1374 aa16.51■□□□□ 0.23
SNCA-208ENST00000505199 MRC1P22897 1456 aa16.5■□□□□ 0.23
SNCA-208ENST00000505199 GNAT3A8MTJ3 354 aa16.5■□□□□ 0.23
SNCA-208ENST00000505199 PLSCR1O15162 318 aa16.5■□□□□ 0.23
SNCA-208ENST00000505199 PHACTR3Q96KR7 559 aa16.5■□□□□ 0.23
SNCA-208ENST00000505199 NGEFQ8N5V2 710 aa16.49■□□□□ 0.23
SNCA-208ENST00000505199 CEMIPQ8WUJ3 1361 aa16.49■□□□□ 0.23
SNCA-208ENST00000505199 TOGARAM1Q9Y4F4 1720 aa16.48■□□□□ 0.23
SNCA-208ENST00000505199 KDM6AO15550 1401 aaPredicted RBP16.48■□□□□ 0.23
SNCA-208ENST00000505199 TRIM37O94972 964 aa16.48■□□□□ 0.23
SNCA-208ENST00000505199 BAG6P46379 1132 aa16.48■□□□□ 0.23
SNCA-208ENST00000505199 LMOD3Q0VAK6 560 aa16.48■□□□□ 0.23
SNCA-208ENST00000505199 FAM182BQ5T319 152 aa16.48■□□□□ 0.23
SNCA-208ENST00000505199 ITGB4P16144 1822 aa16.47■□□□□ 0.23
SNCA-208ENST00000505199 NFE2L2Q16236 605 aa16.47■□□□□ 0.23
SNCA-208ENST00000505199 CCDC184Q52MB2 194 aa16.46■□□□□ 0.23
SNCA-208ENST00000505199 RTF1Q92541 710 aaKnown RBP16.46■□□□□ 0.23
SNCA-208ENST00000505199 BTAF1O14981 1849 aa16.46■□□□□ 0.23
SNCA-208ENST00000505199 KAT6BQ8WYB5 2073 aa16.46■□□□□ 0.22
SNCA-208ENST00000505199 VIRMAQ69YN4 1812 aaKnown RBP16.45■□□□□ 0.22
SNCA-208ENST00000505199 PRIM1P49642 420 aaKnown RBP16.45■□□□□ 0.22
SNCA-208ENST00000505199 SMARCC1Q92922 1105 aaPredicted RBP16.45■□□□□ 0.22
SNCA-208ENST00000505199 TMOD3Q9NYL9 352 aa16.45■□□□□ 0.22
SNCA-208ENST00000505199 RNMTO43148 476 aaKnown RBP16.44■□□□□ 0.22
SNCA-208ENST00000505199 SLC52A2Q9HAB3 445 aa16.44■□□□□ 0.22
SNCA-208ENST00000505199 DLG5Q8TDM6 1919 aa16.44■□□□□ 0.22
SNCA-208ENST00000505199 ZNF831Q5JPB2 1677 aa16.43■□□□□ 0.22
SNCA-208ENST00000505199 KCNQ2O43526 872 aa16.43■□□□□ 0.22
SNCA-208ENST00000505199 APBA3O96018 575 aa16.43■□□□□ 0.22
SNCA-208ENST00000505199 TMPOP42166 694 aaKnown RBP16.43■□□□□ 0.22
SNCA-208ENST00000505199 CABP4P57796 275 aa16.43■□□□□ 0.22
SNCA-208ENST00000505199 MPRIPQ6WCQ1 1025 aa16.43■□□□□ 0.22
SNCA-208ENST00000505199 LY75O60449 1722 aa16.42■□□□□ 0.22
SNCA-208ENST00000505199 SIPA1L3O60292 1781 aaPredicted RBP16.42■□□□□ 0.22
SNCA-208ENST00000505199 CCDC27Q2M243 656 aa16.42■□□□□ 0.22
SNCA-208ENST00000505199 SLC27A3Q5K4L6 730 aa16.42■□□□□ 0.22
SNCA-208ENST00000505199 SYTL4Q96C24 671 aaPredicted RBP16.42■□□□□ 0.22
SNCA-208ENST00000505199 ACSBG1Q96GR2 724 aa16.42■□□□□ 0.22
SNCA-208ENST00000505199 BABAM1Q9NWV8 329 aa16.42■□□□□ 0.22
SNCA-208ENST00000505199 TEFQ10587 303 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms