RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 MTFR1LQ9H019 292 aa23.08■■□□□ 1.29
SYNE4-207ENST00000505054 ATF5Q9Y2D1 282 aaPredicted RBP23.08■■□□□ 1.29
SYNE4-207ENST00000505054 ACSBG1Q96GR2 724 aa23.07■■□□□ 1.28
SYNE4-207ENST00000505054 CHD4Q14839 1912 aa23.07■■□□□ 1.28
SYNE4-207ENST00000505054 RRS1Q15050 365 aaKnown RBP23.06■■□□□ 1.28
SYNE4-207ENST00000505054 ANKRD24Q8TF21 1146 aa23.06■■□□□ 1.28
SYNE4-207ENST00000505054 SGIP1Q9BQI5 828 aa23.04■■□□□ 1.28
SYNE4-207ENST00000505054 RTL1A6NKG5 1358 aa23.03■■□□□ 1.28
SYNE4-207ENST00000505054 IP6K1Q92551 441 aa23.03■■□□□ 1.28
SYNE4-207ENST00000505054 FHDC1Q9C0D6 1143 aaPredicted RBP23.03■■□□□ 1.28
SYNE4-207ENST00000505054 DOT1LQ8TEK3 1739 aa23.02■■□□□ 1.28
SYNE4-207ENST00000505054 SHANK3Q9BYB0 1731 aa23.02■■□□□ 1.28
SYNE4-207ENST00000505054 TUBGCP6Q96RT7 1819 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 HOXC9P31274 260 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 SYT17Q9BSW7 474 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 EMILIN1Q9Y6C2 1016 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 COL24A1Q17RW2 1714 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 MAP3K5Q99683 1374 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 NPC1L1Q9UHC9 1359 aa23.01■■□□□ 1.27
SYNE4-207ENST00000505054 TNNT2P45379 298 aaPredicted RBP23■■□□□ 1.27
SYNE4-207ENST00000505054 AMPHP49418 695 aa23■■□□□ 1.27
SYNE4-207ENST00000505054 MORC1Q86VD1 984 aa23■■□□□ 1.27
SYNE4-207ENST00000505054 LY75O60449 1722 aa22.99■■□□□ 1.27
SYNE4-207ENST00000505054 RGPD2P0DJD1 1756 aa22.99■■□□□ 1.27
SYNE4-207ENST00000505054 ZNF827Q17R98 1081 aa22.98■■□□□ 1.27
SYNE4-207ENST00000505054 CC2D1BQ5T0F9 858 aaKnown RBP22.98■■□□□ 1.27
SYNE4-207ENST00000505054 FLT4P35916 1363 aa22.98■■□□□ 1.27
SYNE4-207ENST00000505054 KIF24Q5T7B8 1368 aa22.98■■□□□ 1.27
SYNE4-207ENST00000505054 UTRNP46939 3433 aa22.97■■□□□ 1.27
SYNE4-207ENST00000505054 ARXQ96QS3 562 aa22.97■■□□□ 1.27
SYNE4-207ENST00000505054 POLKQ9UBT6 870 aa22.97■■□□□ 1.27
SYNE4-207ENST00000505054 SMG6Q86US8 1419 aaKnown RBP22.96■■□□□ 1.27
SYNE4-207ENST00000505054 LRRC4BQ9NT99 713 aa22.95■■□□□ 1.26
SYNE4-207ENST00000505054 INSRP06213 1382 aa22.94■■□□□ 1.26
SYNE4-207ENST00000505054 HSP90AB2PQ58FF8 381 aa22.94■■□□□ 1.26
SYNE4-207ENST00000505054 SLC27A3Q5K4L6 730 aa22.94■■□□□ 1.26
SYNE4-207ENST00000505054 DDX10Q13206 875 aaKnown RBP22.93■■□□□ 1.26
SYNE4-207ENST00000505054 ZNF784Q8NCA9 323 aaPredicted RBP22.93■■□□□ 1.26
SYNE4-207ENST00000505054 LTV1Q96GA3 475 aaPredicted RBP22.93■■□□□ 1.26
SYNE4-207ENST00000505054 PPM1GO15355 546 aaPredicted RBP22.92■■□□□ 1.26
SYNE4-207ENST00000505054 CNGB1Q14028 1251 aaPredicted RBP22.92■■□□□ 1.26
SYNE4-207ENST00000505054 AKT1S1Q96B36 256 aa22.92■■□□□ 1.26
SYNE4-207ENST00000505054 MAP2P11137 1827 aaKnown RBP22.92■■□□□ 1.26
SYNE4-207ENST00000505054 DDX54Q8TDD1 881 aaKnown RBP22.91■■□□□ 1.26
SYNE4-207ENST00000505054 SLC16A10Q8TF71 515 aa22.9■■□□□ 1.26
SYNE4-207ENST00000505054 MEGF6O75095 1541 aa22.9■■□□□ 1.26
SYNE4-207ENST00000505054 ZNF316A6NFI3 1004 aaPredicted RBP22.89■■□□□ 1.25
SYNE4-207ENST00000505054 PNPLA7Q6ZV29 1317 aa22.88■■□□□ 1.25
SYNE4-207ENST00000505054 SYTL4Q96C24 671 aaPredicted RBP22.86■■□□□ 1.25
SYNE4-207ENST00000505054 POLD1P28340 1107 aa22.85■■□□□ 1.25
SYNE4-207ENST00000505054 C5P01031 1676 aa22.84■■□□□ 1.25
SYNE4-207ENST00000505054 NBPF6Q5VWK0 638 aa22.84■■□□□ 1.25
SYNE4-207ENST00000505054 ZCRB1Q8TBF4 217 aaKnown RBP22.84■■□□□ 1.25
SYNE4-207ENST00000505054 NBPF4Q96M43 638 aa22.84■■□□□ 1.25
SYNE4-207ENST00000505054 PRIM1P49642 420 aaKnown RBP22.83■■□□□ 1.25
SYNE4-207ENST00000505054 TFCP2L1Q9NZI6 479 aa22.83■■□□□ 1.25
SYNE4-207ENST00000505054 MTHFSP49914 203 aa22.82■■□□□ 1.24
SYNE4-207ENST00000505054 EIF4A2Q14240 407 aaKnown RBP22.82■■□□□ 1.24
SYNE4-207ENST00000505054 NCAPD2Q15021 1401 aa22.82■■□□□ 1.24
SYNE4-207ENST00000505054 TAF1LQ8IZX4 1826 aa22.81■■□□□ 1.24
SYNE4-207ENST00000505054 USHBP1Q8N6Y0 703 aa22.81■■□□□ 1.24
SYNE4-207ENST00000505054 GPR162Q16538 588 aa22.8■■□□□ 1.24
SYNE4-207ENST00000505054 KLHL34Q8N239 644 aa22.8■■□□□ 1.24
SYNE4-207ENST00000505054 KCNQ4P56696 695 aa22.79■■□□□ 1.24
SYNE4-207ENST00000505054 CCNL1Q9UK58 526 aaPredicted RBP22.79■■□□□ 1.24
SYNE4-207ENST00000505054 EYA1Q99502 592 aa22.78■■□□□ 1.24
SYNE4-207ENST00000505054 PKD1L3Q7Z443 1732 aa22.77■■□□□ 1.24
SYNE4-207ENST00000505054 PPP2R1AP30153 589 aa22.77■■□□□ 1.24
SYNE4-207ENST00000505054 COL3A1P02461 1466 aaPredicted RBP22.77■■□□□ 1.24
SYNE4-207ENST00000505054 TOGARAM1Q9Y4F4 1720 aa22.77■■□□□ 1.23
SYNE4-207ENST00000505054 RAPGEF4Q8WZA2 1011 aa22.76■■□□□ 1.23
SYNE4-207ENST00000505054 GOLGB1Q14789 3259 aaKnown RBP22.76■■□□□ 1.23
SYNE4-207ENST00000505054 ITGB4P16144 1822 aa22.75■■□□□ 1.23
SYNE4-207ENST00000505054 IL13P35225 146 aa22.74■■□□□ 1.23
SYNE4-207ENST00000505054 IGSF1Q8N6C5 1336 aa22.74■■□□□ 1.23
SYNE4-207ENST00000505054 PCDH11XQ9BZA7 1347 aa22.74■■□□□ 1.23
SYNE4-207ENST00000505054 PCDH11YQ9BZA8 1340 aa22.74■■□□□ 1.23
SYNE4-207ENST00000505054 PELP1Q8IZL8 1130 aaKnown RBP22.73■■□□□ 1.23
SYNE4-207ENST00000505054 NLGN2Q8NFZ4 835 aa22.73■■□□□ 1.23
SYNE4-207ENST00000505054 TATP17735 454 aaPredicted RBP22.72■■□□□ 1.23
SYNE4-207ENST00000505054 C1QTNF8P60827 252 aa22.72■■□□□ 1.23
SYNE4-207ENST00000505054 SENP3-EIF4A1A0A087X0R7 540 aa22.71■■□□□ 1.23
SYNE4-207ENST00000505054 C4BP0C0L5 1744 aa22.71■■□□□ 1.23
SYNE4-207ENST00000505054 MSH5O43196 834 aa22.7■■□□□ 1.22
SYNE4-207ENST00000505054 RALBP1Q15311 655 aa22.7■■□□□ 1.22
SYNE4-207ENST00000505054 COL23A1Q86Y22 540 aaPredicted RBP22.7■■□□□ 1.22
SYNE4-207ENST00000505054 UBR3Q6ZT12 1888 aa22.69■■□□□ 1.22
SYNE4-207ENST00000505054 PALLDQ8WX93 1383 aa22.69■■□□□ 1.22
SYNE4-207ENST00000505054 DIAPH1O60610 1272 aaKnown RBP22.69■■□□□ 1.22
SYNE4-207ENST00000505054 HMGB2P26583 209 aaKnown RBP22.69■■□□□ 1.22
SYNE4-207ENST00000505054 AEBP1Q8IUX7 1158 aa22.68■■□□□ 1.22
SYNE4-207ENST00000505054 KDRP35968 1356 aa22.66■■□□□ 1.22
SYNE4-207ENST00000505054 GIGYF1O75420 1035 aaPredicted RBP22.66■■□□□ 1.22
SYNE4-207ENST00000505054 GRIN3BO60391 1043 aa22.65■■□□□ 1.22
SYNE4-207ENST00000505054 MSL1Q68DK7 614 aa22.65■■□□□ 1.22
SYNE4-207ENST00000505054 FLAD1Q8NFF5 587 aa22.65■■□□□ 1.22
SYNE4-207ENST00000505054 CFAP53Q96M91 514 aa22.65■■□□□ 1.22
SYNE4-207ENST00000505054 PRKRIP1Q9H875 184 aaPredicted RBP22.65■■□□□ 1.22
SYNE4-207ENST00000505054 YBX3P16989 372 aaKnown RBP eCLIP22.64■■□□□ 1.21
SYNE4-207ENST00000505054 SULT6B1Q6IMI4 303 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms