RNA–Protein interactions for RNA: ENST00000504634.5

NEDD9-209, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 745 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-209ENST00000504634 TESK2Q96S53 571 aa17■□□□□ 0.31
NEDD9-209ENST00000504634 PNPLA7Q6ZV29 1317 aa16.99■□□□□ 0.31
NEDD9-209ENST00000504634 BTAF1O14981 1849 aa16.99■□□□□ 0.31
NEDD9-209ENST00000504634 MSH5O43196 834 aa16.99■□□□□ 0.31
NEDD9-209ENST00000504634 CCNL1Q9UK58 526 aaPredicted RBP16.99■□□□□ 0.31
NEDD9-209ENST00000504634 RRS1Q15050 365 aaKnown RBP16.97■□□□□ 0.31
NEDD9-209ENST00000504634 RAPGEF4Q8WZA2 1011 aa16.97■□□□□ 0.31
NEDD9-209ENST00000504634 USP47Q96K76 1375 aa16.96■□□□□ 0.31
NEDD9-209ENST00000504634 SMG6Q86US8 1419 aaKnown RBP16.96■□□□□ 0.3
NEDD9-209ENST00000504634 RTL1A6NKG5 1358 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 SENP3-EIF4A1A0A087X0R7 540 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 NBPF6Q5VWK0 638 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 USHBP1Q8N6Y0 703 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 NBPF4Q96M43 638 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 GGNBP2Q9H3C7 697 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 MEGF6O75095 1541 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 CGNL1Q0VF96 1302 aa16.95■□□□□ 0.3
NEDD9-209ENST00000504634 NSD2O96028 1365 aa16.94■□□□□ 0.3
NEDD9-209ENST00000504634 TATP17735 454 aaPredicted RBP16.94■□□□□ 0.3
NEDD9-209ENST00000504634 C1QTNF8P60827 252 aa16.94■□□□□ 0.3
NEDD9-209ENST00000504634 TMF1P82094 1093 aa16.94■□□□□ 0.3
NEDD9-209ENST00000504634 KAT6BQ8WYB5 2073 aa16.93■□□□□ 0.3
NEDD9-209ENST00000504634 FYB1O15117 783 aa16.93■□□□□ 0.3
NEDD9-209ENST00000504634 NLGN2Q8NFZ4 835 aa16.93■□□□□ 0.3
NEDD9-209ENST00000504634 FAM208AQ9UK61 1670 aaKnown RBP16.93■□□□□ 0.3
NEDD9-209ENST00000504634 COL23A1Q86Y22 540 aaPredicted RBP16.92■□□□□ 0.3
NEDD9-209ENST00000504634 HMGB2P26583 209 aaKnown RBP16.91■□□□□ 0.3
NEDD9-209ENST00000504634 HSP90AB2PQ58FF8 381 aa16.91■□□□□ 0.3
NEDD9-209ENST00000504634 GRIN3BO60391 1043 aa16.9■□□□□ 0.3
NEDD9-209ENST00000504634 GIGYF1O75420 1035 aaPredicted RBP16.9■□□□□ 0.3
NEDD9-209ENST00000504634 MSL1Q68DK7 614 aa16.9■□□□□ 0.3
NEDD9-209ENST00000504634 PCDH11XQ9BZA7 1347 aa16.9■□□□□ 0.3
NEDD9-209ENST00000504634 PCDH11YQ9BZA8 1340 aa16.9■□□□□ 0.3
NEDD9-209ENST00000504634 CEP350Q5VT06 3117 aa16.9■□□□□ 0.3
NEDD9-209ENST00000504634 CDCA8Q53HL2 280 aa16.89■□□□□ 0.29
NEDD9-209ENST00000504634 MPRIPQ6WCQ1 1025 aa16.89■□□□□ 0.29
NEDD9-209ENST00000504634 INSRP06213 1382 aa16.88■□□□□ 0.29
NEDD9-209ENST00000504634 DOT1LQ8TEK3 1739 aa16.87■□□□□ 0.29
NEDD9-209ENST00000504634 FLAD1Q8NFF5 587 aa16.87■□□□□ 0.29
NEDD9-209ENST00000504634 FLT4P35916 1363 aa16.87■□□□□ 0.29
NEDD9-209ENST00000504634 PALLDQ8WX93 1383 aa16.87■□□□□ 0.29
NEDD9-209ENST00000504634 GOLGB1Q14789 3259 aaKnown RBP16.86■□□□□ 0.29
NEDD9-209ENST00000504634 PPM1GO15355 546 aaPredicted RBP16.85■□□□□ 0.29
NEDD9-209ENST00000504634 YBX3P16989 372 aaKnown RBP eCLIP16.85■□□□□ 0.29
NEDD9-209ENST00000504634 SMARCC1Q92922 1105 aaPredicted RBP16.85■□□□□ 0.29
NEDD9-209ENST00000504634 QSER1Q2KHR3 1735 aa16.84■□□□□ 0.29
NEDD9-209ENST00000504634 AK7Q96M32 723 aa16.84■□□□□ 0.29
NEDD9-209ENST00000504634 KIF24Q5T7B8 1368 aa16.84■□□□□ 0.29
NEDD9-209ENST00000504634 CYP27B1O15528 508 aa16.83■□□□□ 0.28
NEDD9-209ENST00000504634 LY75O60449 1722 aa16.83■□□□□ 0.28
NEDD9-209ENST00000504634 CHD4Q14839 1912 aa16.83■□□□□ 0.28
NEDD9-209ENST00000504634 CD2APQ9Y5K6 639 aa16.83■□□□□ 0.28
NEDD9-209ENST00000504634 EMILIN1Q9Y6C2 1016 aa16.82■□□□□ 0.28
NEDD9-209ENST00000504634 PHF14O94880 888 aa16.81■□□□□ 0.28
NEDD9-209ENST00000504634 SPG7Q9UQ90 795 aa16.81■□□□□ 0.28
NEDD9-209ENST00000504634 RGPD2P0DJD1 1756 aa16.81■□□□□ 0.28
NEDD9-209ENST00000504634 SHANK3Q9BYB0 1731 aa16.81■□□□□ 0.28
NEDD9-209ENST00000504634 CARD14Q9BXL6 1004 aa16.8■□□□□ 0.28
NEDD9-209ENST00000504634 NSD3Q9BZ95 1437 aa16.79■□□□□ 0.28
NEDD9-209ENST00000504634 PIGBQ92521 554 aa16.79■□□□□ 0.28
NEDD9-209ENST00000504634 COL24A1Q17RW2 1714 aa16.79■□□□□ 0.28
NEDD9-209ENST00000504634 TUBGCP6Q96RT7 1819 aa16.78■□□□□ 0.28
NEDD9-209ENST00000504634 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.78■□□□□ 0.28
NEDD9-209ENST00000504634 NKX1-1Q15270 411 aaPredicted RBP16.77■□□□□ 0.28
NEDD9-209ENST00000504634 TMOD3Q9NYL9 352 aa16.77■□□□□ 0.28
NEDD9-209ENST00000504634 LOC102724428A0A0B4J2F2 783 aa16.76■□□□□ 0.27
NEDD9-209ENST00000504634 SIK1P57059 783 aa16.76■□□□□ 0.27
NEDD9-209ENST00000504634 SMIM5Q71RC9 77 aa16.76■□□□□ 0.27
NEDD9-209ENST00000504634 GPBP1L1Q9HC44 474 aaPredicted RBP16.76■□□□□ 0.27
NEDD9-209ENST00000504634 WWC3Q9ULE0 1092 aa16.76■□□□□ 0.27
NEDD9-209ENST00000504634 ATP10DQ9P241 1426 aa16.76■□□□□ 0.27
NEDD9-209ENST00000504634 SSFA2P28290 1259 aa16.75■□□□□ 0.27
NEDD9-209ENST00000504634 AMIGO3Q86WK7 504 aa16.75■□□□□ 0.27
NEDD9-209ENST00000504634 EYA1Q99502 592 aa16.75■□□□□ 0.27
NEDD9-209ENST00000504634 POLR3GLQ9BT43 218 aa16.75■□□□□ 0.27
NEDD9-209ENST00000504634 C5P01031 1676 aa16.75■□□□□ 0.27
NEDD9-209ENST00000504634 WASHC2AQ641Q2 1341 aa16.74■□□□□ 0.27
NEDD9-209ENST00000504634 IFNL2Q8IZJ0 200 aa16.74■□□□□ 0.27
NEDD9-209ENST00000504634 LINC00116Q8NCU8 138 aa16.74■□□□□ 0.27
NEDD9-209ENST00000504634 ZNF526Q8TF50 670 aaPredicted RBP16.74■□□□□ 0.27
NEDD9-209ENST00000504634 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.74■□□□□ 0.27
NEDD9-209ENST00000504634 IGSF1Q8N6C5 1336 aa16.73■□□□□ 0.27
NEDD9-209ENST00000504634 GNPATO15228 680 aa16.73■□□□□ 0.27
NEDD9-209ENST00000504634 ATP6V1AP38606 617 aa16.73■□□□□ 0.27
NEDD9-209ENST00000504634 ASAP1Q9ULH1 1129 aa16.73■□□□□ 0.27
NEDD9-209ENST00000504634 PHKG2P15735 406 aa16.72■□□□□ 0.27
NEDD9-209ENST00000504634 TNNT2P45379 298 aaPredicted RBP16.72■□□□□ 0.27
NEDD9-209ENST00000504634 C4BP0C0L5 1744 aa16.71■□□□□ 0.27
NEDD9-209ENST00000504634 KIF20BQ96Q89 1820 aa16.71■□□□□ 0.27
NEDD9-209ENST00000504634 TRIM26Q12899 539 aaPredicted RBP16.71■□□□□ 0.27
NEDD9-209ENST00000504634 POLKQ9UBT6 870 aa16.71■□□□□ 0.27
NEDD9-209ENST00000504634 NCAPD2Q15021 1401 aa16.7■□□□□ 0.26
NEDD9-209ENST00000504634 ITPK1Q13572 414 aa16.7■□□□□ 0.26
NEDD9-209ENST00000504634 ATG3Q9NT62 314 aa16.69■□□□□ 0.26
NEDD9-209ENST00000504634 TOGARAM1Q9Y4F4 1720 aa16.68■□□□□ 0.26
NEDD9-209ENST00000504634 MMP10P09238 476 aa16.68■□□□□ 0.26
NEDD9-209ENST00000504634 EIF4A2Q14240 407 aaKnown RBP16.68■□□□□ 0.26
NEDD9-209ENST00000504634 TRAPPC3LQ5T215 181 aa16.67■□□□□ 0.26
NEDD9-209ENST00000504634 TIMELESSQ9UNS1 1208 aa16.67■□□□□ 0.26
NEDD9-209ENST00000504634 RTCBQ9Y3I0 505 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms