RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 KCNH5Q8NCM2 988 aa13.66□□□□□ -0.22
NUP54-203ENST00000504173 ANKRD26Q9UPS8 1709 aa13.66□□□□□ -0.22
NUP54-203ENST00000504173 PAPPAQ13219 1627 aa13.65□□□□□ -0.22
NUP54-203ENST00000504173 COL24A1Q17RW2 1714 aa13.65□□□□□ -0.22
NUP54-203ENST00000504173 JMYQ8N9B5 988 aa13.65□□□□□ -0.22
NUP54-203ENST00000504173 NPC1L1Q9UHC9 1359 aa13.65□□□□□ -0.22
NUP54-203ENST00000504173 LMO7Q8WWI1 1683 aa13.65□□□□□ -0.22
NUP54-203ENST00000504173 LRRC37A3O60309 1634 aa13.64□□□□□ -0.23
NUP54-203ENST00000504173 ZBTB7CA1YPR0 619 aa13.64□□□□□ -0.23
NUP54-203ENST00000504173 ZC3H6P61129 1189 aaKnown RBP13.64□□□□□ -0.23
NUP54-203ENST00000504173 MORC1Q86VD1 984 aa13.64□□□□□ -0.23
NUP54-203ENST00000504173 NFAT5O94916 1531 aa13.64□□□□□ -0.23
NUP54-203ENST00000504173 CPDO75976 1380 aa13.63□□□□□ -0.23
NUP54-203ENST00000504173 KIF3CO14782 793 aa13.63□□□□□ -0.23
NUP54-203ENST00000504173 NLGN2Q8NFZ4 835 aa13.63□□□□□ -0.23
NUP54-203ENST00000504173 SLC16A10Q8TF71 515 aa13.63□□□□□ -0.23
NUP54-203ENST00000504173 TNNT2P45379 298 aaPredicted RBP13.62□□□□□ -0.23
NUP54-203ENST00000504173 POLD1P28340 1107 aa13.61□□□□□ -0.23
NUP54-203ENST00000504173 DDB1Q16531 1140 aa13.61□□□□□ -0.23
NUP54-203ENST00000504173 FBLN1P23142 703 aa13.6□□□□□ -0.23
NUP54-203ENST00000504173 CRB1P82279 1406 aa13.6□□□□□ -0.23
NUP54-203ENST00000504173 ARHGEF25Q86VW2 580 aa13.6□□□□□ -0.23
NUP54-203ENST00000504173 COL5A2P05997 1499 aaPredicted RBP13.6□□□□□ -0.23
NUP54-203ENST00000504173 LTN1O94822 1766 aa13.59□□□□□ -0.23
NUP54-203ENST00000504173 RRS1Q15050 365 aaKnown RBP13.59□□□□□ -0.23
NUP54-203ENST00000504173 KLHL34Q8N239 644 aa13.59□□□□□ -0.23
NUP54-203ENST00000504173 KLRG1Q96E93 195 aa13.59□□□□□ -0.23
NUP54-203ENST00000504173 MAP3K19Q56UN5 1328 aa13.59□□□□□ -0.23
NUP54-203ENST00000504173 AMPHP49418 695 aa13.58□□□□□ -0.24
NUP54-203ENST00000504173 MARCH10Q8NA82 808 aaPredicted RBP13.58□□□□□ -0.24
NUP54-203ENST00000504173 ZNF526Q8TF50 670 aaPredicted RBP13.58□□□□□ -0.24
NUP54-203ENST00000504173 PPM1GO15355 546 aaPredicted RBP13.57□□□□□ -0.24
NUP54-203ENST00000504173 RTL1A6NKG5 1358 aa13.57□□□□□ -0.24
NUP54-203ENST00000504173 ABCC6O95255 1503 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 MAP2P11137 1827 aaKnown RBP13.56□□□□□ -0.24
NUP54-203ENST00000504173 ZNF827Q17R98 1081 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 POLKQ9UBT6 870 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 EMILIN1Q9Y6C2 1016 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 PCNTO95613 3336 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 QSER1Q2KHR3 1735 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 WDR90Q96KV7 1748 aa13.56□□□□□ -0.24
NUP54-203ENST00000504173 TOMM70O94826 608 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 HOXC9P31274 260 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 RALBP1Q15311 655 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 IP6K1Q92551 441 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 WWC3Q9ULE0 1092 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 FLT4P35916 1363 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 COL18A1P39060 1754 aa13.55□□□□□ -0.24
NUP54-203ENST00000504173 CDCA7Q9BWT1 371 aaPredicted RBP13.54□□□□□ -0.24
NUP54-203ENST00000504173 AXIN2Q9Y2T1 843 aa13.54□□□□□ -0.24
NUP54-203ENST00000504173 SMG6Q86US8 1419 aaKnown RBP13.54□□□□□ -0.24
NUP54-203ENST00000504173 PPP2R1AP30153 589 aa13.53□□□□□ -0.24
NUP54-203ENST00000504173 RGPD5Q99666 1765 aa13.53□□□□□ -0.24
NUP54-203ENST00000504173 ANP32CO43423 234 aa13.52□□□□□ -0.25
NUP54-203ENST00000504173 CSB-PGBD3P0DP91 1061 aa13.52□□□□□ -0.25
NUP54-203ENST00000504173 MTHFSP49914 203 aa13.52□□□□□ -0.25
NUP54-203ENST00000504173 AKT1S1Q96B36 256 aa13.52□□□□□ -0.25
NUP54-203ENST00000504173 LTV1Q96GA3 475 aaPredicted RBP13.52□□□□□ -0.25
NUP54-203ENST00000504173 PRKRIP1Q9H875 184 aaPredicted RBP13.52□□□□□ -0.25
NUP54-203ENST00000504173 WNK3Q9BYP7 1800 aa13.51□□□□□ -0.25
NUP54-203ENST00000504173 INSRP06213 1382 aa13.51□□□□□ -0.25
NUP54-203ENST00000504173 HSP90AB2PQ58FF8 381 aa13.51□□□□□ -0.25
NUP54-203ENST00000504173 ANKRD24Q8TF21 1146 aa13.51□□□□□ -0.25
NUP54-203ENST00000504173 NHSQ6T4R5 1651 aa13.5□□□□□ -0.25
NUP54-203ENST00000504173 ERBB3P21860 1342 aa13.5□□□□□ -0.25
NUP54-203ENST00000504173 PNPLA7Q6ZV29 1317 aa13.5□□□□□ -0.25
NUP54-203ENST00000504173 MYBBP1AQ9BQG0 1328 aaKnown RBP13.5□□□□□ -0.25
NUP54-203ENST00000504173 WDR17Q8IZU2 1322 aa13.49□□□□□ -0.25
NUP54-203ENST00000504173 DIEXFQ68CQ4 756 aaKnown RBP13.48□□□□□ -0.25
NUP54-203ENST00000504173 TOM1L2Q6ZVM7 507 aa13.48□□□□□ -0.25
NUP54-203ENST00000504173 CFAP53Q96M91 514 aa13.48□□□□□ -0.25
NUP54-203ENST00000504173 LRRC4BQ9NT99 713 aa13.48□□□□□ -0.25
NUP54-203ENST00000504173 NLRP2Q9NX02 1062 aa13.47□□□□□ -0.25
NUP54-203ENST00000504173 CD2APQ9Y5K6 639 aa13.47□□□□□ -0.25
NUP54-203ENST00000504173 FAM208AQ9UK61 1670 aaKnown RBP13.47□□□□□ -0.25
NUP54-203ENST00000504173 EIF4A2Q14240 407 aaKnown RBP13.46□□□□□ -0.25
NUP54-203ENST00000504173 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.25
NUP54-203ENST00000504173 RBM46Q8TBY0 533 aaKnown RBP13.46□□□□□ -0.25
NUP54-203ENST00000504173 DIAPH1O60610 1272 aaKnown RBP13.45□□□□□ -0.26
NUP54-203ENST00000504173 CARD10Q9BWT7 1032 aa13.45□□□□□ -0.26
NUP54-203ENST00000504173 COL3A1P02461 1466 aaPredicted RBP13.44□□□□□ -0.26
NUP54-203ENST00000504173 MSH5O43196 834 aa13.44□□□□□ -0.26
NUP54-203ENST00000504173 HTRA3P83110 453 aa13.44□□□□□ -0.26
NUP54-203ENST00000504173 SLC27A3Q5K4L6 730 aa13.44□□□□□ -0.26
NUP54-203ENST00000504173 TNS2Q63HR2 1409 aa13.44□□□□□ -0.26
NUP54-203ENST00000504173 CICQ96RK0 1608 aaPredicted RBP13.43□□□□□ -0.26
NUP54-203ENST00000504173 RGPD2P0DJD1 1756 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 EXOC5O00471 708 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 ADRA2BP18089 450 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 IL13P35225 146 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 FSTL1Q12841 308 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 NBPF6Q5VWK0 638 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 NBPF4Q96M43 638 aa13.43□□□□□ -0.26
NUP54-203ENST00000504173 HSPA1AP0DMV8 641 aaKnown RBP13.42□□□□□ -0.26
NUP54-203ENST00000504173 HSPA1BP0DMV9 641 aaKnown RBP13.42□□□□□ -0.26
NUP54-203ENST00000504173 USHBP1Q8N6Y0 703 aa13.42□□□□□ -0.26
NUP54-203ENST00000504173 EYA1Q99502 592 aa13.42□□□□□ -0.26
NUP54-203ENST00000504173 TFCP2L1Q9NZI6 479 aa13.42□□□□□ -0.26
NUP54-203ENST00000504173 NUDCQ9Y266 331 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms