RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 PAPPAQ13219 1627 aa16.54■□□□□ 0.24
MED28-203ENST00000503945 CHD4Q14839 1912 aa16.54■□□□□ 0.24
MED28-203ENST00000503945 ZNF784Q8NCA9 323 aaPredicted RBP16.53■□□□□ 0.24
MED28-203ENST00000503945 AKT1S1Q96B36 256 aa16.52■□□□□ 0.24
MED28-203ENST00000503945 RGPD2P0DJD1 1756 aa16.51■□□□□ 0.23
MED28-203ENST00000503945 KCNQ4P56696 695 aa16.51■□□□□ 0.23
MED28-203ENST00000503945 ZCRB1Q8TBF4 217 aaKnown RBP16.51■□□□□ 0.23
MED28-203ENST00000503945 HSPA5P11021 654 aaKnown RBP16.5■□□□□ 0.23
MED28-203ENST00000503945 PRIM1P49642 420 aaKnown RBP16.5■□□□□ 0.23
MED28-203ENST00000503945 HSP90AB2PQ58FF8 381 aa16.5■□□□□ 0.23
MED28-203ENST00000503945 NBPF6Q5VWK0 638 aa16.5■□□□□ 0.23
MED28-203ENST00000503945 NBPF4Q96M43 638 aa16.5■□□□□ 0.23
MED28-203ENST00000503945 CGNL1Q0VF96 1302 aa16.49■□□□□ 0.23
MED28-203ENST00000503945 PPM1GO15355 546 aaPredicted RBP16.49■□□□□ 0.23
MED28-203ENST00000503945 SLC27A3Q5K4L6 730 aa16.49■□□□□ 0.23
MED28-203ENST00000503945 RAPGEF4Q8WZA2 1011 aa16.48■□□□□ 0.23
MED28-203ENST00000503945 SYTL4Q96C24 671 aaPredicted RBP16.48■□□□□ 0.23
MED28-203ENST00000503945 UTRNP46939 3433 aa16.47■□□□□ 0.23
MED28-203ENST00000503945 SLC16A10Q8TF71 515 aa16.47■□□□□ 0.23
MED28-203ENST00000503945 FAM208AQ9UK61 1670 aaKnown RBP16.46■□□□□ 0.23
MED28-203ENST00000503945 PNPLA7Q6ZV29 1317 aa16.46■□□□□ 0.23
MED28-203ENST00000503945 QSER1Q2KHR3 1735 aa16.46■□□□□ 0.23
MED28-203ENST00000503945 TATP17735 454 aaPredicted RBP16.46■□□□□ 0.23
MED28-203ENST00000503945 TFCP2L1Q9NZI6 479 aa16.46■□□□□ 0.23
MED28-203ENST00000503945 TUBGCP6Q96RT7 1819 aa16.46■□□□□ 0.23
MED28-203ENST00000503945 RTL1A6NKG5 1358 aa16.46■□□□□ 0.23
MED28-203ENST00000503945 MAP3K5Q99683 1374 aa16.46■□□□□ 0.23
MED28-203ENST00000503945 GPR162Q16538 588 aa16.45■□□□□ 0.22
MED28-203ENST00000503945 USHBP1Q8N6Y0 703 aa16.45■□□□□ 0.22
MED28-203ENST00000503945 PANK3Q9H999 370 aa16.45■□□□□ 0.22
MED28-203ENST00000503945 COL24A1Q17RW2 1714 aa16.45■□□□□ 0.22
MED28-203ENST00000503945 SMG6Q86US8 1419 aaKnown RBP16.45■□□□□ 0.22
MED28-203ENST00000503945 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
MED28-203ENST00000503945 INSRP06213 1382 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 KIF24Q5T7B8 1368 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 POLD1P28340 1107 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 KLHL34Q8N239 644 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 EMILIN1Q9Y6C2 1016 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 LY75O60449 1722 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 DOT1LQ8TEK3 1739 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 SHANK3Q9BYB0 1731 aa16.44■□□□□ 0.22
MED28-203ENST00000503945 NSD2O96028 1365 aa16.43■□□□□ 0.22
MED28-203ENST00000503945 FLT4P35916 1363 aa16.43■□□□□ 0.22
MED28-203ENST00000503945 TNNT2P45379 298 aaPredicted RBP16.42■□□□□ 0.22
MED28-203ENST00000503945 WASHC2AQ641Q2 1341 aa16.42■□□□□ 0.22
MED28-203ENST00000503945 MEGF6O75095 1541 aa16.41■□□□□ 0.22
MED28-203ENST00000503945 POLKQ9UBT6 870 aa16.41■□□□□ 0.22
MED28-203ENST00000503945 CCNL1Q9UK58 526 aaPredicted RBP16.41■□□□□ 0.22
MED28-203ENST00000503945 PELP1Q8IZL8 1130 aaKnown RBP16.4■□□□□ 0.22
MED28-203ENST00000503945 COL23A1Q86Y22 540 aaPredicted RBP16.39■□□□□ 0.21
MED28-203ENST00000503945 NLGN2Q8NFZ4 835 aa16.39■□□□□ 0.21
MED28-203ENST00000503945 MSH5O43196 834 aa16.38■□□□□ 0.21
MED28-203ENST00000503945 HMGB2P26583 209 aaKnown RBP16.38■□□□□ 0.21
MED28-203ENST00000503945 C1QTNF8P60827 252 aa16.38■□□□□ 0.21
MED28-203ENST00000503945 SPG7Q9UQ90 795 aa16.38■□□□□ 0.21
MED28-203ENST00000503945 KNSTRNQ9Y448 316 aa16.38■□□□□ 0.21
MED28-203ENST00000503945 MORC1Q86VD1 984 aa16.37■□□□□ 0.21
MED28-203ENST00000503945 EYA1Q99502 592 aa16.37■□□□□ 0.21
MED28-203ENST00000503945 PCDH11XQ9BZA7 1347 aa16.36■□□□□ 0.21
MED28-203ENST00000503945 PCDH11YQ9BZA8 1340 aa16.36■□□□□ 0.21
MED28-203ENST00000503945 SENP3-EIF4A1A0A087X0R7 540 aa16.35■□□□□ 0.21
MED28-203ENST00000503945 MPRIPQ6WCQ1 1025 aa16.35■□□□□ 0.21
MED28-203ENST00000503945 CYP27B1O15528 508 aa16.34■□□□□ 0.21
MED28-203ENST00000503945 YBX3P16989 372 aaKnown RBP eCLIP16.34■□□□□ 0.213e-7■□□□□ 9.4
MED28-203ENST00000503945 MSL1Q68DK7 614 aa16.34■□□□□ 0.21
MED28-203ENST00000503945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.34■□□□□ 0.21
MED28-203ENST00000503945 TAF1LQ8IZX4 1826 aa16.33■□□□□ 0.2
MED28-203ENST00000503945 ITGB4P16144 1822 aa16.32■□□□□ 0.2
MED28-203ENST00000503945 EIF4A2Q14240 407 aaKnown RBP16.32■□□□□ 0.2
MED28-203ENST00000503945 KIF20BQ96Q89 1820 aa16.31■□□□□ 0.2
MED28-203ENST00000503945 C5P01031 1676 aa16.31■□□□□ 0.2
MED28-203ENST00000503945 NKX1-1Q15270 411 aaPredicted RBP16.31■□□□□ 0.2
MED28-203ENST00000503945 IFNL2Q8IZJ0 200 aa16.31■□□□□ 0.2
MED28-203ENST00000503945 GRIN3BO60391 1043 aa16.3■□□□□ 0.2
MED28-203ENST00000503945 SMARCC1Q92922 1105 aaPredicted RBP16.3■□□□□ 0.2
MED28-203ENST00000503945 PALLDQ8WX93 1383 aa16.29■□□□□ 0.2
MED28-203ENST00000503945 GIGYF1O75420 1035 aaPredicted RBP16.29■□□□□ 0.2
MED28-203ENST00000503945 GOLGB1Q14789 3259 aaKnown RBP16.29■□□□□ 0.2
MED28-203ENST00000503945 PLEKHO1Q53GL0 409 aaPredicted RBP16.28■□□□□ 0.2
MED28-203ENST00000503945 SMIM5Q71RC9 77 aa16.28■□□□□ 0.2
MED28-203ENST00000503945 FLAD1Q8NFF5 587 aa16.28■□□□□ 0.2
MED28-203ENST00000503945 PIGBQ92521 554 aa16.28■□□□□ 0.2
MED28-203ENST00000503945 KIF7Q2M1P5 1343 aa16.27■□□□□ 0.2
MED28-203ENST00000503945 MAP2P11137 1827 aaKnown RBP16.27■□□□□ 0.2
MED28-203ENST00000503945 AMIGO3Q86WK7 504 aa16.27■□□□□ 0.2
MED28-203ENST00000503945 CD2APQ9Y5K6 639 aa16.27■□□□□ 0.2
MED28-203ENST00000503945 TOGARAM1Q9Y4F4 1720 aa16.27■□□□□ 0.19
MED28-203ENST00000503945 PHKG2P15735 406 aa16.26■□□□□ 0.19
MED28-203ENST00000503945 TMOD3Q9NYL9 352 aa16.26■□□□□ 0.19
MED28-203ENST00000503945 HSP90AB1P08238 724 aaKnown RBP16.25■□□□□ 0.19
MED28-203ENST00000503945 AMOTQ4VCS5 1084 aa16.25■□□□□ 0.19
MED28-203ENST00000503945 AMER1Q5JTC6 1135 aaPredicted RBP16.25■□□□□ 0.19
MED28-203ENST00000503945 AK7Q96M32 723 aa16.25■□□□□ 0.19
MED28-203ENST00000503945 C4BP0C0L5 1744 aa16.25■□□□□ 0.19
MED28-203ENST00000503945 PER1O15534 1290 aaPredicted RBP16.24■□□□□ 0.19
MED28-203ENST00000503945 PKD1L3Q7Z443 1732 aa16.24■□□□□ 0.19
MED28-203ENST00000503945 UBR3Q6ZT12 1888 aa16.24■□□□□ 0.19
MED28-203ENST00000503945 PHF14O94880 888 aa16.23■□□□□ 0.19
MED28-203ENST00000503945 IGSF1Q8N6C5 1336 aa16.22■□□□□ 0.19
MED28-203ENST00000503945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms