RNA–Protein interactions for RNA: ENST00000503401.1

SCLT1-205, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene SCLT1, Length 1,604 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-205ENST00000503401 MARCH10Q8NA82 808 aaPredicted RBP22.17■■□□□ 1.14
SCLT1-205ENST00000503401 HMOX1P09601 288 aa22.16■■□□□ 1.14
SCLT1-205ENST00000503401 ZCRB1Q8TBF4 217 aaKnown RBP22.14■■□□□ 1.14
SCLT1-205ENST00000503401 DDX54Q8TDD1 881 aaKnown RBP22.14■■□□□ 1.14
SCLT1-205ENST00000503401 SOCS7O14512 581 aa22.13■■□□□ 1.13
SCLT1-205ENST00000503401 KAT6BQ8WYB5 2073 aa22.13■■□□□ 1.13
SCLT1-205ENST00000503401 KDRP35968 1356 aa22.12■■□□□ 1.13
SCLT1-205ENST00000503401 PKD1L3Q7Z443 1732 aa22.12■■□□□ 1.13
SCLT1-205ENST00000503401 ANP32CO43423 234 aa22.11■■□□□ 1.13
SCLT1-205ENST00000503401 FAM196AQ6ZSG2 479 aa22.11■■□□□ 1.13
SCLT1-205ENST00000503401 UPF1Q92900 1129 aaKnown RBP eCLIP22.11■■□□□ 1.13
SCLT1-205ENST00000503401 SBF2Q86WG5 1849 aa22.1■■□□□ 1.13
SCLT1-205ENST00000503401 NUDCQ9Y266 331 aa22.09■■□□□ 1.13
SCLT1-205ENST00000503401 U2AF1L5P0DN76 240 aaPredicted RBP22.09■■□□□ 1.13
SCLT1-205ENST00000503401 U2AF1Q01081 240 aaKnown RBP eCLIP22.09■■□□□ 1.13
SCLT1-205ENST00000503401 CYP27B1O15528 508 aa22.07■■□□□ 1.12
SCLT1-205ENST00000503401 TRIM37O94972 964 aa22.07■■□□□ 1.12
SCLT1-205ENST00000503401 PCDH11XQ9BZA7 1347 aa22.07■■□□□ 1.12
SCLT1-205ENST00000503401 PCDH11YQ9BZA8 1340 aa22.07■■□□□ 1.12
SCLT1-205ENST00000503401 SPG7Q9UQ90 795 aa22.06■■□□□ 1.12
SCLT1-205ENST00000503401 ACSBG1Q96GR2 724 aa22.05■■□□□ 1.12
SCLT1-205ENST00000503401 CCDC184Q52MB2 194 aa22.04■■□□□ 1.12
SCLT1-205ENST00000503401 PLEKHO1Q53GL0 409 aaPredicted RBP22.04■■□□□ 1.12
SCLT1-205ENST00000503401 PTF1AQ7RTS3 328 aa22.04■■□□□ 1.12
SCLT1-205ENST00000503401 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.04■■□□□ 1.127e-6■■□□□ 12.8
SCLT1-205ENST00000503401 RSPH6AQ9H0K4 717 aa22.03■■□□□ 1.12
SCLT1-205ENST00000503401 DOT1LQ8TEK3 1739 aa22.03■■□□□ 1.12
SCLT1-205ENST00000503401 TNS1Q9HBL0 1735 aaKnown RBP22.03■■□□□ 1.12
SCLT1-205ENST00000503401 PRKAR2BP31323 418 aa22.02■■□□□ 1.12
SCLT1-205ENST00000503401 BCL9O00512 1426 aa22.02■■□□□ 1.12
SCLT1-205ENST00000503401 KCNQ2O43526 872 aa22.02■■□□□ 1.11
SCLT1-205ENST00000503401 ZNF530Q6P9A1 599 aaPredicted RBP22.02■■□□□ 1.11
SCLT1-205ENST00000503401 PHKG2P15735 406 aa22.01■■□□□ 1.11
SCLT1-205ENST00000503401 AMOTQ4VCS5 1084 aa22.01■■□□□ 1.11
SCLT1-205ENST00000503401 PLEKHG2Q9H7P9 1386 aa22■■□□□ 1.11
SCLT1-205ENST00000503401 IFNL2Q8IZJ0 200 aa22■■□□□ 1.11
SCLT1-205ENST00000503401 TOGARAM1Q9Y4F4 1720 aa22■■□□□ 1.11
SCLT1-205ENST00000503401 MTHFSDQ2M296 383 aaKnown RBP21.99■■□□□ 1.11
SCLT1-205ENST00000503401 PHACTR3Q96KR7 559 aa21.99■■□□□ 1.11
SCLT1-205ENST00000503401 NHSQ6T4R5 1651 aa21.99■■□□□ 1.11
SCLT1-205ENST00000503401 FCHSD2O94868 740 aa21.98■■□□□ 1.11
SCLT1-205ENST00000503401 SF3B2Q13435 895 aaKnown RBP21.98■■□□□ 1.11
SCLT1-205ENST00000503401 DEFB132Q7Z7B7 95 aa21.98■■□□□ 1.11
SCLT1-205ENST00000503401 CCDC125Q86Z20 511 aa21.98■■□□□ 1.11
SCLT1-205ENST00000503401 SYTL4Q96C24 671 aaPredicted RBP21.98■■□□□ 1.11
SCLT1-205ENST00000503401 PRIM1P49642 420 aaKnown RBP21.96■■□□□ 1.11
SCLT1-205ENST00000503401 C1orf141Q5JVX7 400 aa21.96■■□□□ 1.11
SCLT1-205ENST00000503401 BCL11BQ9C0K0 894 aaPredicted RBP21.96■■□□□ 1.11
SCLT1-205ENST00000503401 ITGB4P16144 1822 aa21.96■■□□□ 1.11
SCLT1-205ENST00000503401 BTAF1O14981 1849 aa21.95■■□□□ 1.1
SCLT1-205ENST00000503401 VIRMAQ69YN4 1812 aaKnown RBP21.95■■□□□ 1.1
SCLT1-205ENST00000503401 APBA3O96018 575 aa21.95■■□□□ 1.1
SCLT1-205ENST00000503401 WDR43Q15061 677 aaKnown RBP eCLIP21.95■■□□□ 1.12e-6■■■■■ 30.3
SCLT1-205ENST00000503401 NKX1-1Q15270 411 aaPredicted RBP21.95■■□□□ 1.1
SCLT1-205ENST00000503401 DIEXFQ68CQ4 756 aaKnown RBP21.95■■□□□ 1.1
SCLT1-205ENST00000503401 MRS2Q9HD23 443 aa21.95■■□□□ 1.1
SCLT1-205ENST00000503401 MPRIPQ6WCQ1 1025 aa21.94■■□□□ 1.1
SCLT1-205ENST00000503401 ADAMTS8Q9UP79 889 aa21.94■■□□□ 1.1
SCLT1-205ENST00000503401 KDM6AO15550 1401 aaPredicted RBP21.93■■□□□ 1.1
SCLT1-205ENST00000503401 EN1Q05925 392 aaPredicted RBP21.93■■□□□ 1.1
SCLT1-205ENST00000503401 PLEKHF1Q96S99 279 aa21.93■■□□□ 1.1
SCLT1-205ENST00000503401 AKAP4Q5JQC9 854 aa21.92■■□□□ 1.1
SCLT1-205ENST00000503401 BAG6P46379 1132 aa21.91■■□□□ 1.1
SCLT1-205ENST00000503401 CCDC146Q8IYE0 955 aa21.91■■□□□ 1.1
SCLT1-205ENST00000503401 GAS2L2Q8NHY3 880 aa21.91■■□□□ 1.1
SCLT1-205ENST00000503401 SCN11AQ9UI33 1791 aa21.91■■□□□ 1.1
SCLT1-205ENST00000503401 HSP90AB1P08238 724 aaKnown RBP21.9■■□□□ 1.1
SCLT1-205ENST00000503401 DCAF5Q96JK2 942 aa21.9■■□□□ 1.1
SCLT1-205ENST00000503401 LGR6Q9HBX8 967 aa21.89■■□□□ 1.09
SCLT1-205ENST00000503401 DLG5Q8TDM6 1919 aa21.89■■□□□ 1.09
SCLT1-205ENST00000503401 EZH2Q15910 746 aaKnown RBP21.88■■□□□ 1.09
SCLT1-205ENST00000503401 MAPK8IP3Q9UPT6 1336 aa21.88■■□□□ 1.09
SCLT1-205ENST00000503401 MAP3K5Q99683 1374 aa21.88■■□□□ 1.09
SCLT1-205ENST00000503401 NEFMP07197 916 aa21.88■■□□□ 1.09
SCLT1-205ENST00000503401 PIGBQ92521 554 aa21.87■■□□□ 1.09
SCLT1-205ENST00000503401 PNNQ9H307 717 aaKnown RBP21.87■■□□□ 1.09
SCLT1-205ENST00000503401 GNAT3A8MTJ3 354 aa21.86■■□□□ 1.09
SCLT1-205ENST00000503401 PNISRQ8TF01 805 aaKnown RBP21.86■■□□□ 1.09
SCLT1-205ENST00000503401 CAMKK2Q96RR4 588 aa21.86■■□□□ 1.09
SCLT1-205ENST00000503401 TMOD3Q9NYL9 352 aa21.86■■□□□ 1.09
SCLT1-205ENST00000503401 RNMTO43148 476 aaKnown RBP21.85■■□□□ 1.09
SCLT1-205ENST00000503401 ERVV-2B6SEH9 535 aa21.84■■□□□ 1.09
SCLT1-205ENST00000503401 ADAMTS7Q9UKP4 1686 aa21.84■■□□□ 1.09
SCLT1-205ENST00000503401 PLSCR1O15162 318 aa21.84■■□□□ 1.09
SCLT1-205ENST00000503401 CABP4P57796 275 aa21.84■■□□□ 1.09
SCLT1-205ENST00000503401 RGPD3A6NKT7 1758 aaPredicted RBP21.83■■□□□ 1.08
SCLT1-205ENST00000503401 RGPD4Q7Z3J3 1758 aa21.83■■□□□ 1.08
SCLT1-205ENST00000503401 NFE2L2Q16236 605 aa21.83■■□□□ 1.08
SCLT1-205ENST00000503401 NFATC2IPQ8NCF5 419 aa21.83■■□□□ 1.08
SCLT1-205ENST00000503401 IL17REQ8NFR9 667 aa21.83■■□□□ 1.08
SCLT1-205ENST00000503401 DCTN1Q14203 1278 aa21.82■■□□□ 1.08
SCLT1-205ENST00000503401 MIER1Q8N108 512 aa21.82■■□□□ 1.08
SCLT1-205ENST00000503401 RUNDC1Q96C34 613 aa21.82■■□□□ 1.08
SCLT1-205ENST00000503401 RRP7AQ9Y3A4 280 aaKnown RBP21.82■■□□□ 1.08
SCLT1-205ENST00000503401 MCM10Q7L590 875 aa21.81■■□□□ 1.08
SCLT1-205ENST00000503401 PROM2Q8N271 834 aa21.81■■□□□ 1.08
SCLT1-205ENST00000503401 RREB1Q92766 1687 aa21.81■■□□□ 1.08
SCLT1-205ENST00000503401 ASAP1Q9ULH1 1129 aa21.8■■□□□ 1.08
SCLT1-205ENST00000503401 LY75O60449 1722 aa21.8■■□□□ 1.08
SCLT1-205ENST00000503401 SENP3-EIF4A1A0A087X0R7 540 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms