RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 HOXC9P31274 260 aa20.81■□□□□ 0.92
TRAF4-212ENST00000498540 PRIM1P49642 420 aaKnown RBP20.81■□□□□ 0.92
TRAF4-212ENST00000498540 GPR162Q16538 588 aa20.81■□□□□ 0.92
TRAF4-212ENST00000498540 PUS7Q96PZ0 661 aaKnown RBP20.81■□□□□ 0.92
TRAF4-212ENST00000498540 TFCP2L1Q9NZI6 479 aa20.8■□□□□ 0.92
TRAF4-212ENST00000498540 POLD1P28340 1107 aa20.79■□□□□ 0.92
TRAF4-212ENST00000498540 COG3Q96JB2 828 aa20.79■□□□□ 0.92
TRAF4-212ENST00000498540 TONSLQ96HA7 1378 aa20.78■□□□□ 0.92
TRAF4-212ENST00000498540 TESK2Q96S53 571 aa20.78■□□□□ 0.92
TRAF4-212ENST00000498540 AMPHP49418 695 aa20.77■□□□□ 0.92
TRAF4-212ENST00000498540 C1QTNF8P60827 252 aa20.77■□□□□ 0.92
TRAF4-212ENST00000498540 NLGN2Q8NFZ4 835 aa20.77■□□□□ 0.92
TRAF4-212ENST00000498540 SENP3-EIF4A1A0A087X0R7 540 aa20.76■□□□□ 0.91
TRAF4-212ENST00000498540 PELP1Q8IZL8 1130 aaKnown RBP20.76■□□□□ 0.91
TRAF4-212ENST00000498540 ZCRB1Q8TBF4 217 aaKnown RBP20.76■□□□□ 0.91
TRAF4-212ENST00000498540 GOLGB1Q14789 3259 aaKnown RBP20.76■□□□□ 0.91
TRAF4-212ENST00000498540 RTL1A6NKG5 1358 aa20.74■□□□□ 0.91
TRAF4-212ENST00000498540 ST20-MTHFSA0A0A6YYL1 179 aa20.74■□□□□ 0.91
TRAF4-212ENST00000498540 CCNL1Q9UK58 526 aaPredicted RBP20.74■□□□□ 0.91
TRAF4-212ENST00000498540 C5P01031 1676 aa20.73■□□□□ 0.91
TRAF4-212ENST00000498540 RRS1Q15050 365 aaKnown RBP20.72■□□□□ 0.91
TRAF4-212ENST00000498540 NBPF6Q5VWK0 638 aa20.72■□□□□ 0.91
TRAF4-212ENST00000498540 USHBP1Q8N6Y0 703 aa20.72■□□□□ 0.91
TRAF4-212ENST00000498540 NBPF4Q96M43 638 aa20.72■□□□□ 0.91
TRAF4-212ENST00000498540 USP47Q96K76 1375 aa20.71■□□□□ 0.91
TRAF4-212ENST00000498540 COL23A1Q86Y22 540 aaPredicted RBP20.7■□□□□ 0.9
TRAF4-212ENST00000498540 TAF1LQ8IZX4 1826 aa20.69■□□□□ 0.9
TRAF4-212ENST00000498540 MSH5O43196 834 aa20.69■□□□□ 0.9
TRAF4-212ENST00000498540 YBX3P16989 372 aaKnown RBP eCLIP20.69■□□□□ 0.9
TRAF4-212ENST00000498540 KIF20BQ96Q89 1820 aa20.69■□□□□ 0.9
TRAF4-212ENST00000498540 MSL1Q68DK7 614 aa20.68■□□□□ 0.9
TRAF4-212ENST00000498540 GGNBP2Q9H3C7 697 aa20.68■□□□□ 0.9
TRAF4-212ENST00000498540 TOGARAM1Q9Y4F4 1720 aa20.67■□□□□ 0.9
TRAF4-212ENST00000498540 FYB1O15117 783 aa20.67■□□□□ 0.9
TRAF4-212ENST00000498540 GIGYF1O75420 1035 aaPredicted RBP20.67■□□□□ 0.9
TRAF4-212ENST00000498540 CGNL1Q0VF96 1302 aa20.67■□□□□ 0.9
TRAF4-212ENST00000498540 SMG6Q86US8 1419 aaKnown RBP20.67■□□□□ 0.9
TRAF4-212ENST00000498540 RAPGEF4Q8WZA2 1011 aa20.66■□□□□ 0.9
TRAF4-212ENST00000498540 ITGB4P16144 1822 aa20.64■□□□□ 0.9
TRAF4-212ENST00000498540 INSRP06213 1382 aa20.63■□□□□ 0.89
TRAF4-212ENST00000498540 PALLDQ8WX93 1383 aa20.63■□□□□ 0.89
TRAF4-212ENST00000498540 PCDH11XQ9BZA7 1347 aa20.63■□□□□ 0.89
TRAF4-212ENST00000498540 PCDH11YQ9BZA8 1340 aa20.63■□□□□ 0.89
TRAF4-212ENST00000498540 TATP17735 454 aaPredicted RBP20.63■□□□□ 0.89
TRAF4-212ENST00000498540 HSP90AB2PQ58FF8 381 aa20.63■□□□□ 0.89
TRAF4-212ENST00000498540 C4BP0C0L5 1744 aa20.62■□□□□ 0.89
TRAF4-212ENST00000498540 PKD1L3Q7Z443 1732 aa20.62■□□□□ 0.89
TRAF4-212ENST00000498540 SLC24A1O60721 1099 aa20.62■□□□□ 0.89
TRAF4-212ENST00000498540 FLT4P35916 1363 aa20.61■□□□□ 0.89
TRAF4-212ENST00000498540 GRIN3BO60391 1043 aa20.61■□□□□ 0.89
TRAF4-212ENST00000498540 MPRIPQ6WCQ1 1025 aa20.6■□□□□ 0.89
TRAF4-212ENST00000498540 UBR3Q6ZT12 1888 aa20.6■□□□□ 0.89
TRAF4-212ENST00000498540 CYP27B1O15528 508 aa20.59■□□□□ 0.89
TRAF4-212ENST00000498540 TMF1P82094 1093 aa20.59■□□□□ 0.89
TRAF4-212ENST00000498540 AMIGO3Q86WK7 504 aa20.58■□□□□ 0.89
TRAF4-212ENST00000498540 ATP10DQ9P241 1426 aa20.58■□□□□ 0.88
TRAF4-212ENST00000498540 KIF24Q5T7B8 1368 aa20.58■□□□□ 0.88
TRAF4-212ENST00000498540 CD2APQ9Y5K6 639 aa20.57■□□□□ 0.88
TRAF4-212ENST00000498540 ANKRD26Q9UPS8 1709 aa20.56■□□□□ 0.88
TRAF4-212ENST00000498540 MAP2P11137 1827 aaKnown RBP20.56■□□□□ 0.88
TRAF4-212ENST00000498540 FLAD1Q8NFF5 587 aa20.56■□□□□ 0.88
TRAF4-212ENST00000498540 NCAPD2Q15021 1401 aa20.55■□□□□ 0.88
TRAF4-212ENST00000498540 SMIM5Q71RC9 77 aa20.55■□□□□ 0.88
TRAF4-212ENST00000498540 EMILIN1Q9Y6C2 1016 aa20.55■□□□□ 0.88
TRAF4-212ENST00000498540 CEP350Q5VT06 3117 aa20.55■□□□□ 0.88
TRAF4-212ENST00000498540 AK7Q96M32 723 aa20.54■□□□□ 0.88
TRAF4-212ENST00000498540 SMARCC1Q92922 1105 aaPredicted RBP20.53■□□□□ 0.88
TRAF4-212ENST00000498540 CARD14Q9BXL6 1004 aa20.53■□□□□ 0.88
TRAF4-212ENST00000498540 NSD3Q9BZ95 1437 aa20.53■□□□□ 0.88
TRAF4-212ENST00000498540 ADCY9O60503 1353 aa20.52■□□□□ 0.88
TRAF4-212ENST00000498540 PHF14O94880 888 aa20.52■□□□□ 0.88
TRAF4-212ENST00000498540 PIGBQ92521 554 aa20.52■□□□□ 0.88
TRAF4-212ENST00000498540 HMGB2P26583 209 aaKnown RBP20.51■□□□□ 0.87
TRAF4-212ENST00000498540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.5■□□□□ 0.87
TRAF4-212ENST00000498540 WWC3Q9ULE0 1092 aa20.5■□□□□ 0.87
TRAF4-212ENST00000498540 NKX1-1Q15270 411 aaPredicted RBP20.49■□□□□ 0.87
TRAF4-212ENST00000498540 LINC00116Q8NCU8 138 aa20.49■□□□□ 0.87
TRAF4-212ENST00000498540 IGSF1Q8N6C5 1336 aa20.49■□□□□ 0.87
TRAF4-212ENST00000498540 PPM1GO15355 546 aaPredicted RBP20.48■□□□□ 0.87
TRAF4-212ENST00000498540 CDCA8Q53HL2 280 aa20.48■□□□□ 0.87
TRAF4-212ENST00000498540 GPBP1L1Q9HC44 474 aaPredicted RBP20.48■□□□□ 0.87
TRAF4-212ENST00000498540 LOC102724428A0A0B4J2F2 783 aa20.47■□□□□ 0.87
TRAF4-212ENST00000498540 SIK1P57059 783 aa20.47■□□□□ 0.87
TRAF4-212ENST00000498540 ZNF526Q8TF50 670 aaPredicted RBP20.47■□□□□ 0.87
TRAF4-212ENST00000498540 SPG7Q9UQ90 795 aa20.47■□□□□ 0.87
TRAF4-212ENST00000498540 SSFA2P28290 1259 aa20.46■□□□□ 0.87
TRAF4-212ENST00000498540 ITPK1Q13572 414 aa20.45■□□□□ 0.86
TRAF4-212ENST00000498540 EYA1Q99502 592 aa20.45■□□□□ 0.86
TRAF4-212ENST00000498540 ASAP1Q9ULH1 1129 aa20.45■□□□□ 0.86
TRAF4-212ENST00000498540 WASHC2AQ641Q2 1341 aa20.45■□□□□ 0.86
TRAF4-212ENST00000498540 TMOD3Q9NYL9 352 aa20.44■□□□□ 0.86
TRAF4-212ENST00000498540 GNPATO15228 680 aa20.43■□□□□ 0.86
TRAF4-212ENST00000498540 KIAA1551Q9HCM1 1747 aa20.43■□□□□ 0.86
TRAF4-212ENST00000498540 CICQ96RK0 1608 aaPredicted RBP20.42■□□□□ 0.86
TRAF4-212ENST00000498540 KIF13BQ9NQT8 1826 aa20.42■□□□□ 0.86
TRAF4-212ENST00000498540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.42■□□□□ 0.86
TRAF4-212ENST00000498540 PHKG2P15735 406 aa20.41■□□□□ 0.86
TRAF4-212ENST00000498540 ATP6V1AP38606 617 aa20.41■□□□□ 0.86
TRAF4-212ENST00000498540 IFFO2Q5TF58 517 aa20.41■□□□□ 0.86
TRAF4-212ENST00000498540 N4BP2Q86UW6 1770 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms