RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MAPK8IP2Q13387 824 aaPredicted RBP15.86■□□□□ 0.13
CUX1-210ENST00000497815 KDRP35968 1356 aa15.86■□□□□ 0.13
CUX1-210ENST00000497815 THSD7AQ9UPZ6 1657 aa15.86■□□□□ 0.13
CUX1-210ENST00000497815 PRKAR2BP31323 418 aa15.85■□□□□ 0.13
CUX1-210ENST00000497815 DDB1Q16531 1140 aa15.85■□□□□ 0.13
CUX1-210ENST00000497815 OVOS2A0A0G2JMS6 1433 aa15.85■□□□□ 0.13
CUX1-210ENST00000497815 LRRC37A3O60309 1634 aa15.84■□□□□ 0.13
CUX1-210ENST00000497815 CCER2I3L3R5 266 aa15.84■□□□□ 0.13
CUX1-210ENST00000497815 EXOC5O00471 708 aa15.84■□□□□ 0.13
CUX1-210ENST00000497815 RSPH6AQ9H0K4 717 aa15.84■□□□□ 0.13
CUX1-210ENST00000497815 ADAMTS8Q9UP79 889 aa15.84■□□□□ 0.13
CUX1-210ENST00000497815 PARP4Q9UKK3 1724 aaKnown RBP15.84■□□□□ 0.13
CUX1-210ENST00000497815 FCHSD2O94868 740 aa15.83■□□□□ 0.12
CUX1-210ENST00000497815 PDE3BQ13370 1112 aa15.83■□□□□ 0.12
CUX1-210ENST00000497815 FAM9BQ8IZU0 186 aa15.83■□□□□ 0.12
CUX1-210ENST00000497815 ZCRB1Q8TBF4 217 aaKnown RBP15.83■□□□□ 0.12
CUX1-210ENST00000497815 DDX54Q8TDD1 881 aaKnown RBP15.83■□□□□ 0.12
CUX1-210ENST00000497815 PNISRQ8TF01 805 aaKnown RBP15.83■□□□□ 0.12
CUX1-210ENST00000497815 CCDC146Q8IYE0 955 aa15.82■□□□□ 0.12
CUX1-210ENST00000497815 SPG7Q9UQ90 795 aa15.82■□□□□ 0.12
CUX1-210ENST00000497815 TNS2Q63HR2 1409 aa15.82■□□□□ 0.12
CUX1-210ENST00000497815 PLEKHO1Q53GL0 409 aaPredicted RBP15.81■□□□□ 0.12
CUX1-210ENST00000497815 FAM182BQ5T319 152 aa15.81■□□□□ 0.12
CUX1-210ENST00000497815 KRT27Q7Z3Y8 459 aa15.81■□□□□ 0.12
CUX1-210ENST00000497815 PHACTR3Q96KR7 559 aa15.8■□□□□ 0.12
CUX1-210ENST00000497815 MAPK8IP3Q9UPT6 1336 aa15.79■□□□□ 0.12
CUX1-210ENST00000497815 NEFMP07197 916 aa15.79■□□□□ 0.12
CUX1-210ENST00000497815 AMOTQ4VCS5 1084 aa15.79■□□□□ 0.12
CUX1-210ENST00000497815 ZNF530Q6P9A1 599 aaPredicted RBP15.79■□□□□ 0.12
CUX1-210ENST00000497815 MARCH10Q8NA82 808 aaPredicted RBP15.79■□□□□ 0.12
CUX1-210ENST00000497815 PNNQ9H307 717 aaKnown RBP15.79■□□□□ 0.12
CUX1-210ENST00000497815 BRWD3Q6RI45 1802 aa15.78■□□□□ 0.12
CUX1-210ENST00000497815 PCDH11XQ9BZA7 1347 aa15.78■□□□□ 0.12
CUX1-210ENST00000497815 PCDH11YQ9BZA8 1340 aa15.78■□□□□ 0.12
CUX1-210ENST00000497815 MTHFSDQ2M296 383 aaKnown RBP15.78■□□□□ 0.12
CUX1-210ENST00000497815 PLEKHF1Q96S99 279 aa15.78■□□□□ 0.12
CUX1-210ENST00000497815 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.78■□□□□ 0.129e-7■■□□□ 12.9
CUX1-210ENST00000497815 PKD1L3Q7Z443 1732 aa15.77■□□□□ 0.12
CUX1-210ENST00000497815 CYP27B1O15528 508 aa15.77■□□□□ 0.12
CUX1-210ENST00000497815 SHANK3Q9BYB0 1731 aa15.77■□□□□ 0.11
CUX1-210ENST00000497815 SENP3-EIF4A1A0A087X0R7 540 aa15.76■□□□□ 0.11
CUX1-210ENST00000497815 C1orf141Q5JVX7 400 aa15.76■□□□□ 0.11
CUX1-210ENST00000497815 RUNDC1Q96C34 613 aa15.76■□□□□ 0.11
CUX1-210ENST00000497815 PLEKHG2Q9H7P9 1386 aa15.75■□□□□ 0.11
CUX1-210ENST00000497815 PHKG2P15735 406 aa15.75■□□□□ 0.11
CUX1-210ENST00000497815 ILDR2Q71H61 639 aa15.75■□□□□ 0.11
CUX1-210ENST00000497815 IFNL2Q8IZJ0 200 aa15.75■□□□□ 0.11
CUX1-210ENST00000497815 GAS2L2Q8NHY3 880 aa15.75■□□□□ 0.11
CUX1-210ENST00000497815 RRP7AQ9Y3A4 280 aaKnown RBP15.74■□□□□ 0.11
CUX1-210ENST00000497815 NEUROD2Q15784 382 aa15.73■□□□□ 0.11
CUX1-210ENST00000497815 APAF1O14727 1248 aa15.72■□□□□ 0.11
CUX1-210ENST00000497815 NFE2L2Q16236 605 aa15.72■□□□□ 0.11
CUX1-210ENST00000497815 AKAP4Q5JQC9 854 aa15.72■□□□□ 0.11
CUX1-210ENST00000497815 MPRIPQ6WCQ1 1025 aa15.72■□□□□ 0.11
CUX1-210ENST00000497815 ACSBG1Q96GR2 724 aa15.72■□□□□ 0.11
CUX1-210ENST00000497815 GNAT3A8MTJ3 354 aa15.71■□□□□ 0.11
CUX1-210ENST00000497815 FAM196AQ6ZSG2 479 aa15.71■□□□□ 0.11
CUX1-210ENST00000497815 MAP3K5Q99683 1374 aa15.71■□□□□ 0.11
CUX1-210ENST00000497815 TMPOP42166 694 aaKnown RBP15.7■□□□□ 0.1
CUX1-210ENST00000497815 SYTL4Q96C24 671 aaPredicted RBP15.7■□□□□ 0.1
CUX1-210ENST00000497815 HSP90AB1P08238 724 aaKnown RBP15.69■□□□□ 0.1
CUX1-210ENST00000497815 RIPK4P57078 832 aa15.69■□□□□ 0.1
CUX1-210ENST00000497815 NKX1-1Q15270 411 aaPredicted RBP15.69■□□□□ 0.1
CUX1-210ENST00000497815 RTF1Q92541 710 aaKnown RBP15.69■□□□□ 0.1
CUX1-210ENST00000497815 DCAF5Q96JK2 942 aa15.69■□□□□ 0.1
CUX1-210ENST00000497815 LGR6Q9HBX8 967 aa15.69■□□□□ 0.1
CUX1-210ENST00000497815 KDM6AO15550 1401 aaPredicted RBP15.68■□□□□ 0.1
CUX1-210ENST00000497815 DCTN1Q14203 1278 aa15.68■□□□□ 0.1
CUX1-210ENST00000497815 MCM10Q7L590 875 aa15.68■□□□□ 0.1
CUX1-210ENST00000497815 SALL2Q9Y467 1007 aaPredicted RBP15.68■□□□□ 0.1
CUX1-210ENST00000497815 RNMTO43148 476 aaKnown RBP15.67■□□□□ 0.1
CUX1-210ENST00000497815 KCNQ2O43526 872 aa15.67■□□□□ 0.1
CUX1-210ENST00000497815 TRIM37O94972 964 aa15.67■□□□□ 0.1
CUX1-210ENST00000497815 PRIM1P49642 420 aaKnown RBP15.67■□□□□ 0.1
CUX1-210ENST00000497815 DOT1LQ8TEK3 1739 aa15.67■□□□□ 0.1
CUX1-210ENST00000497815 TOGARAM1Q9Y4F4 1720 aa15.66■□□□□ 0.1
CUX1-210ENST00000497815 CABP4P57796 275 aa15.66■□□□□ 0.1
CUX1-210ENST00000497815 PTF1AQ7RTS3 328 aa15.66■□□□□ 0.1
CUX1-210ENST00000497815 IL17REQ8NFR9 667 aa15.66■□□□□ 0.1
CUX1-210ENST00000497815 THUMPD2Q9BTF0 503 aaKnown RBP15.66■□□□□ 0.1
CUX1-210ENST00000497815 BCL9O00512 1426 aa15.66■□□□□ 0.1
CUX1-210ENST00000497815 HTATSF1O43719 755 aaKnown RBP15.64■□□□□ 0.09
CUX1-210ENST00000497815 LMOD3Q0VAK6 560 aa15.64■□□□□ 0.09
CUX1-210ENST00000497815 TMOD3Q9NYL9 352 aa15.64■□□□□ 0.09
CUX1-210ENST00000497815 DLG5Q8TDM6 1919 aa15.63■□□□□ 0.09
CUX1-210ENST00000497815 ERVV-2B6SEH9 535 aa15.63■□□□□ 0.09
CUX1-210ENST00000497815 TEFQ10587 303 aa15.63■□□□□ 0.09
CUX1-210ENST00000497815 NFATC2IPQ8NCF5 419 aa15.63■□□□□ 0.09
CUX1-210ENST00000497815 BCL11BQ9C0K0 894 aaPredicted RBP15.63■□□□□ 0.09
CUX1-210ENST00000497815 TRIM35Q9UPQ4 493 aa15.63■□□□□ 0.09
CUX1-210ENST00000497815 NHSQ6T4R5 1651 aa15.63■□□□□ 0.09
CUX1-210ENST00000497815 PIGBQ92521 554 aa15.62■□□□□ 0.09
CUX1-210ENST00000497815 SLC52A2Q9HAB3 445 aa15.62■□□□□ 0.09
CUX1-210ENST00000497815 SCN11AQ9UI33 1791 aa15.62■□□□□ 0.09
CUX1-210ENST00000497815 ADAMTS7Q9UKP4 1686 aa15.61■□□□□ 0.09
CUX1-210ENST00000497815 SBF2Q86WG5 1849 aa15.61■□□□□ 0.09
CUX1-210ENST00000497815 CEMIPQ8WUJ3 1361 aa15.61■□□□□ 0.09
CUX1-210ENST00000497815 APBA3O96018 575 aa15.6■□□□□ 0.09
CUX1-210ENST00000497815 SF3B2Q13435 895 aaKnown RBP15.6■□□□□ 0.09
CUX1-210ENST00000497815 MRC1P22897 1456 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms