RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 CD109Q6YHK3 1445 aa15.73■□□□□ 0.11
GAPVD1-220ENST00000497580 CCDC66A2RUB6 948 aa15.73■□□□□ 0.11
GAPVD1-220ENST00000497580 RILPL2Q969X0 211 aa15.73■□□□□ 0.11
GAPVD1-220ENST00000497580 ALDH1L2Q3SY69 923 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 CFAP44Q96MT7 982 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 MYOM1P52179 1685 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 TRIM6-TRIM34B2RNG4 842 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 TNNT1P13805 278 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 ZNF518AQ6AHZ1 1483 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 SOX12O15370 315 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 PALD1Q9ULE6 856 aa15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 MINK1Q8N4C8 1332 aaPredicted RBP15.72■□□□□ 0.11
GAPVD1-220ENST00000497580 AP5Z1O43299 807 aa15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 CCDC112Q8NEF3 446 aa15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 RTF1Q92541 710 aaKnown RBP15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 MRPL50Q8N5N7 158 aaKnown RBP15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 PRKAR2BP31323 418 aa15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 CTNNA3Q9UI47 895 aa15.71■□□□□ 0.11
GAPVD1-220ENST00000497580 MCCP23508 829 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 TIGD1Q96MW7 591 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 ST7Q9NRC1 585 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 PTPRTO14522 1441 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 TPD52L1Q16890 204 aaPredicted RBP15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 CCDC186Q7Z3E2 898 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 PLEKHF1Q96S99 279 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 SRCIN1Q9C0H9 1055 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 MX1P20591 662 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 TRAPPC8Q9Y2L5 1435 aa15.7■□□□□ 0.1
GAPVD1-220ENST00000497580 SLFN14P0C7P3 912 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 CAMK4Q16566 473 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 TRIM34Q9BYJ4 488 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 ARHGAP31Q2M1Z3 1444 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 GABPB1Q06547 395 aaPredicted RBP15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 ZBTB9Q96C00 473 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 WDR33Q9C0J8 1336 aaKnown RBP15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 VAMP4O75379 141 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 MADDQ8WXG6 1647 aa15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 RNF17Q9BXT8 1623 aaKnown RBP15.69■□□□□ 0.1
GAPVD1-220ENST00000497580 DIAPH1O60610 1272 aaKnown RBP15.68■□□□□ 0.1
GAPVD1-220ENST00000497580 DCTPP1Q9H773 170 aa15.68■□□□□ 0.1
GAPVD1-220ENST00000497580 TWISTNBQ3B726 338 aaPredicted RBP15.68■□□□□ 0.1
GAPVD1-220ENST00000497580 IQGAP1P46940 1657 aa15.67■□□□□ 0.1
GAPVD1-220ENST00000497580 KRT222Q8N1A0 295 aa15.67■□□□□ 0.1
GAPVD1-220ENST00000497580 KRT24Q2M2I5 525 aa15.67■□□□□ 0.1
GAPVD1-220ENST00000497580 NRBP1Q9UHY1 535 aa15.67■□□□□ 0.1
GAPVD1-220ENST00000497580 SHPRHQ149N8 1683 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 CTIFO43310 598 aaKnown RBP15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 TERF2Q15554 542 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 LUZP1Q86V48 1076 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 TRIM5Q9C035 493 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 DDX41Q9UJV9 622 aaKnown RBP15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 ANKRD36BQ8N2N9 1353 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 SAMD9LQ8IVG5 1584 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 API5Q9BZZ5 524 aaKnown RBP15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 CEP152O94986 1710 aa15.66■□□□□ 0.1
GAPVD1-220ENST00000497580 CKAP2LQ8IYA6 745 aa15.65■□□□□ 0.1
GAPVD1-220ENST00000497580 ZFP91Q96JP5 570 aaPredicted RBP15.65■□□□□ 0.1
GAPVD1-220ENST00000497580 SLC4A10Q6U841 1118 aa15.65■□□□□ 0.1
GAPVD1-220ENST00000497580 KIF18AQ8NI77 898 aa15.65■□□□□ 0.1
GAPVD1-220ENST00000497580 VPS37CA5D8V6 355 aaPredicted RBP15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 TNNT3P45378 269 aaPredicted RBP15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 MCM2P49736 904 aa15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 C8orf58Q8NAV2 365 aa15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 IL16Q14005 1332 aa15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 SMTNL1A8MU46 457 aa15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 EXOC6BQ9Y2D4 811 aa15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 DCTN1Q14203 1278 aa15.64■□□□□ 0.09
GAPVD1-220ENST00000497580 UBE2HP62256 183 aa15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 MBIPQ9NS73 344 aa15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 TPM3P06753 285 aa15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 CCDC192P0DO97 292 aa15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 DNM1Q05193 864 aaKnown RBP15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 GTF3C6Q969F1 213 aa15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 TRMT1Q9NXH9 659 aaKnown RBP15.63■□□□□ 0.09
GAPVD1-220ENST00000497580 TTC37Q6PGP7 1564 aa15.62■□□□□ 0.09
GAPVD1-220ENST00000497580 UGGT1Q9NYU2 1555 aa15.62■□□□□ 0.09
GAPVD1-220ENST00000497580 PHACTR3Q96KR7 559 aa15.62■□□□□ 0.09
GAPVD1-220ENST00000497580 DNAJC2Q99543 621 aaKnown RBP15.62■□□□□ 0.09
GAPVD1-220ENST00000497580 ELF2Q15723 593 aa15.62■□□□□ 0.09
GAPVD1-220ENST00000497580 MEIS3Q99687 375 aa15.62■□□□□ 0.09
GAPVD1-220ENST00000497580 NUTM2FA1L443 756 aa15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 ZNF215Q9UL58 517 aaPredicted RBP15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 ARHGEF5Q12774 1597 aa15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 MAP4K4O95819 1239 aaPredicted RBP15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 CUL4AQ13619 759 aa15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 CALCOCO1Q9P1Z2 691 aa15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 SMC3Q9UQE7 1217 aa15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 CFAP65Q6ZU64 1925 aaKnown RBP15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 FAM83GA6ND36 823 aa15.61■□□□□ 0.09
GAPVD1-220ENST00000497580 KMT5BQ4FZB7 885 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 CEP85Q6P2H3 762 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 FERMT3Q86UX7 667 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 ESYT1Q9BSJ8 1104 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 ABCC4O15439 1325 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 TAF7LQ5H9L4 462 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 CEP135Q66GS9 1140 aa15.6■□□□□ 0.09
GAPVD1-220ENST00000497580 ANKRD44Q8N8A2 993 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms