RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	SBF2	Q86WG5	1849 aa		13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	IGSF1	Q8N6C5	1336 aa		13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	BAG6	P46379	1132 aa		13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	SULT6B1	Q6IMI4	303 aa		13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	PTF1A	Q7RTS3	328 aa		13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	AEBP1	Q8IUX7	1158 aa		13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	TNS1	Q9HBL0	1735 aa	Known RBP	13.25	□□□□□ -0.29
CALD1-223	ENST00000496024	DIAPH1	O60610	1272 aa	Known RBP	13.24	□□□□□ -0.29
CALD1-223	ENST00000496024	EN1	Q05925	392 aa	Predicted RBP	13.24	□□□□□ -0.29
CALD1-223	ENST00000496024	NCAPD2	Q15021	1401 aa		13.23	□□□□□ -0.29
CALD1-223	ENST00000496024	SHANK3	Q9BYB0	1731 aa		13.23	□□□□□ -0.29
CALD1-223	ENST00000496024	U2SURP	O15042	1029 aa	Known RBP	13.23	□□□□□ -0.29
CALD1-223	ENST00000496024	KCNQ2	O43526	872 aa		13.23	□□□□□ -0.29
CALD1-223	ENST00000496024	HMOX1	P09601	288 aa		13.23	□□□□□ -0.29
CALD1-223	ENST00000496024	CFAP53	Q96M91	514 aa		13.23	□□□□□ -0.29
CALD1-223	ENST00000496024	SYTL4	Q96C24	671 aa	Predicted RBP	13.22	□□□□□ -0.29
CALD1-223	ENST00000496024	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.22	□□□□□ -0.29
CALD1-223	ENST00000496024	SPG7	Q9UQ90	795 aa		13.22	□□□□□ -0.29
CALD1-223	ENST00000496024	PARD3	Q8TEW0	1356 aa		13.21	□□□□□ -0.29
CALD1-223	ENST00000496024	PCDH11X	Q9BZA7	1347 aa		13.21	□□□□□ -0.29
CALD1-223	ENST00000496024	PCDH11Y	Q9BZA8	1340 aa		13.21	□□□□□ -0.29
CALD1-223	ENST00000496024	CYP27B1	O15528	508 aa		13.21	□□□□□ -0.29
CALD1-223	ENST00000496024	EZH2	Q15910	746 aa	Known RBP	13.21	□□□□□ -0.29
CALD1-223	ENST00000496024	COL3A1	P02461	1466 aa	Predicted RBP	13.2	□□□□□ -0.3
CALD1-223	ENST00000496024	BCL9	O00512	1426 aa		13.2	□□□□□ -0.3
CALD1-223	ENST00000496024	PKD1L3	Q7Z443	1732 aa		13.19	□□□□□ -0.3
CALD1-223	ENST00000496024	PRIM1	P49642	420 aa	Known RBP	13.19	□□□□□ -0.3
CALD1-223	ENST00000496024	RALBP1	Q15311	655 aa		13.19	□□□□□ -0.3
CALD1-223	ENST00000496024	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.19	□□□□□ -0.3
CALD1-223	ENST00000496024	DOT1L	Q8TEK3	1739 aa		13.19	□□□□□ -0.3
CALD1-223	ENST00000496024	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.18	□□□□□ -0.3
CALD1-223	ENST00000496024	CAMKK2	Q96RR4	588 aa		13.18	□□□□□ -0.3
CALD1-223	ENST00000496024	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.18	□□□□□ -0.3	8e-7	■■□□□ 13.3
CALD1-223	ENST00000496024	NHS	Q6T4R5	1651 aa		13.18	□□□□□ -0.3
CALD1-223	ENST00000496024	IFNL2	Q8IZJ0	200 aa		13.17	□□□□□ -0.3
CALD1-223	ENST00000496024	NUDC	Q9Y266	331 aa		13.17	□□□□□ -0.3
CALD1-223	ENST00000496024	BTAF1	O14981	1849 aa		13.17	□□□□□ -0.3
CALD1-223	ENST00000496024	KDR	P35968	1356 aa		13.17	□□□□□ -0.3
CALD1-223	ENST00000496024	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.16	□□□□□ -0.3
CALD1-223	ENST00000496024	PHKG2	P15735	406 aa		13.16	□□□□□ -0.3
CALD1-223	ENST00000496024	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.16	□□□□□ -0.3
CALD1-223	ENST00000496024	AMOT	Q4VCS5	1084 aa		13.15	□□□□□ -0.3
CALD1-223	ENST00000496024	C1orf141	Q5JVX7	400 aa		13.15	□□□□□ -0.3
CALD1-223	ENST00000496024	MPRIP	Q6WCQ1	1025 aa		13.15	□□□□□ -0.3
CALD1-223	ENST00000496024	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.14	□□□□□ -0.31
CALD1-223	ENST00000496024	PLSCR1	O15162	318 aa		13.14	□□□□□ -0.31
CALD1-223	ENST00000496024	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.14	□□□□□ -0.31
CALD1-223	ENST00000496024	TOGARAM1	Q9Y4F4	1720 aa		13.13	□□□□□ -0.31
CALD1-223	ENST00000496024	ITGB4	P16144	1822 aa		13.13	□□□□□ -0.31
CALD1-223	ENST00000496024	PRKAR2B	P31323	418 aa		13.13	□□□□□ -0.31
CALD1-223	ENST00000496024	NKX1-1	Q15270	411 aa	Predicted RBP	13.13	□□□□□ -0.31
CALD1-223	ENST00000496024	PSD	A5PKW4	1024 aa	Predicted RBP	13.12	□□□□□ -0.31
CALD1-223	ENST00000496024	TXNRD1	Q16881	649 aa		13.12	□□□□□ -0.31
CALD1-223	ENST00000496024	MTHFSD	Q2M296	383 aa	Known RBP	13.12	□□□□□ -0.31
CALD1-223	ENST00000496024	PROM2	Q8N271	834 aa		13.12	□□□□□ -0.31
CALD1-223	ENST00000496024	HSP90AB1	P08238	724 aa	Known RBP	13.11	□□□□□ -0.31
CALD1-223	ENST00000496024	KCNQ4	P56696	695 aa		13.11	□□□□□ -0.31
CALD1-223	ENST00000496024	PIGB	Q92521	554 aa		13.11	□□□□□ -0.31
CALD1-223	ENST00000496024	RSPH6A	Q9H0K4	717 aa		13.11	□□□□□ -0.31
CALD1-223	ENST00000496024	TMOD3	Q9NYL9	352 aa		13.11	□□□□□ -0.31
CALD1-223	ENST00000496024	RREB1	Q92766	1687 aa		13.11	□□□□□ -0.31
CALD1-223	ENST00000496024	NUP188	Q5SRE5	1749 aa		13.1	□□□□□ -0.31
CALD1-223	ENST00000496024	PLEKHG2	Q9H7P9	1386 aa		13.1	□□□□□ -0.31
CALD1-223	ENST00000496024	R3HDM1	Q15032	1099 aa	Known RBP	13.1	□□□□□ -0.31
CALD1-223	ENST00000496024	AKAP4	Q5JQC9	854 aa		13.1	□□□□□ -0.31
CALD1-223	ENST00000496024	DCAF5	Q96JK2	942 aa		13.1	□□□□□ -0.31
CALD1-223	ENST00000496024	PHACTR3	Q96KR7	559 aa		13.1	□□□□□ -0.31
CALD1-223	ENST00000496024	KDM6A	O15550	1401 aa	Predicted RBP	13.09	□□□□□ -0.31
CALD1-223	ENST00000496024	CABP4	P57796	275 aa		13.09	□□□□□ -0.31
CALD1-223	ENST00000496024	NBPF14	Q5TI25	921 aa		13.09	□□□□□ -0.31
CALD1-223	ENST00000496024	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.09	□□□□□ -0.31
CALD1-223	ENST00000496024	RGPD4	Q7Z3J3	1758 aa		13.09	□□□□□ -0.31
CALD1-223	ENST00000496024	ERVV-2	B6SEH9	535 aa		13.08	□□□□□ -0.32
CALD1-223	ENST00000496024	ANP32C	O43423	234 aa		13.08	□□□□□ -0.32
CALD1-223	ENST00000496024	FCHSD2	O94868	740 aa		13.08	□□□□□ -0.32
CALD1-223	ENST00000496024	LGR6	Q9HBX8	967 aa		13.08	□□□□□ -0.32
CALD1-223	ENST00000496024	VIRMA	Q69YN4	1812 aa	Known RBP	13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	NEFM	P07197	916 aa		13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	GAS2L2	Q8NHY3	880 aa		13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	LRRC4B	Q9NT99	713 aa		13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	CCNL1	Q9UK58	526 aa	Predicted RBP	13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	ASAP1	Q9ULH1	1129 aa		13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	PALLD	Q8WX93	1383 aa		13.07	□□□□□ -0.32
CALD1-223	ENST00000496024	RNMT	O43148	476 aa	Known RBP	13.06	□□□□□ -0.32
CALD1-223	ENST00000496024	WDR43	Q15061	677 aa	Known RBP eCLIP	13.06	□□□□□ -0.32
CALD1-223	ENST00000496024	NFATC2IP	Q8NCF5	419 aa		13.06	□□□□□ -0.32
CALD1-223	ENST00000496024	SMARCC1	Q92922	1105 aa	Predicted RBP	13.06	□□□□□ -0.32
CALD1-223	ENST00000496024	SCN11A	Q9UI33	1791 aa		13.06	□□□□□ -0.32
CALD1-223	ENST00000496024	GNAT3	A8MTJ3	354 aa		13.05	□□□□□ -0.32
CALD1-223	ENST00000496024	SLC27A3	Q5K4L6	730 aa		13.05	□□□□□ -0.32
CALD1-223	ENST00000496024	STK32B	Q9NY57	414 aa		13.05	□□□□□ -0.32
CALD1-223	ENST00000496024	MAP3K5	Q99683	1374 aa		13.05	□□□□□ -0.32
CALD1-223	ENST00000496024	LY75	O60449	1722 aa		13.05	□□□□□ -0.32
CALD1-223	ENST00000496024	RBM42	Q9BTD8	480 aa	Known RBP	13.04	□□□□□ -0.32
CALD1-223	ENST00000496024	ATG3	Q9NT62	314 aa		13.04	□□□□□ -0.32
CALD1-223	ENST00000496024	CCDC184	Q52MB2	194 aa		13.03	□□□□□ -0.32
CALD1-223	ENST00000496024	CCDC146	Q8IYE0	955 aa		13.03	□□□□□ -0.32
CALD1-223	ENST00000496024	IL17RE	Q8NFR9	667 aa		13.03	□□□□□ -0.32
CALD1-223	ENST00000496024	PNN	Q9H307	717 aa	Known RBP	13.03	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 10 ms