RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 ZCRB1Q8TBF4 217 aaKnown RBP30.84■■■□□ 2.53
HDDC3-203ENST00000494993 SMG6Q86US8 1419 aaKnown RBP30.83■■■□□ 2.53
HDDC3-203ENST00000494993 SGIP1Q9BQI5 828 aa30.83■■■□□ 2.53
HDDC3-203ENST00000494993 SLC27A3Q5K4L6 730 aa30.82■■■□□ 2.52
HDDC3-203ENST00000494993 NBPF6Q5VWK0 638 aa30.82■■■□□ 2.52
HDDC3-203ENST00000494993 NBPF4Q96M43 638 aa30.82■■■□□ 2.52
HDDC3-203ENST00000494993 SYTL4Q96C24 671 aaPredicted RBP30.81■■■□□ 2.52
HDDC3-203ENST00000494993 NSD2O96028 1365 aa30.8■■■□□ 2.52
HDDC3-203ENST00000494993 PRIM1P49642 420 aaKnown RBP30.8■■■□□ 2.52
HDDC3-203ENST00000494993 AKT1S1Q96B36 256 aa30.79■■■□□ 2.52
HDDC3-203ENST00000494993 INSRP06213 1382 aa30.79■■■□□ 2.52
HDDC3-203ENST00000494993 CGNL1Q0VF96 1302 aa30.78■■■□□ 2.52
HDDC3-203ENST00000494993 USHBP1Q8N6Y0 703 aa30.78■■■□□ 2.52
HDDC3-203ENST00000494993 FHDC1Q9C0D6 1143 aaPredicted RBP30.78■■■□□ 2.52
HDDC3-203ENST00000494993 COL24A1Q17RW2 1714 aa30.78■■■□□ 2.52
HDDC3-203ENST00000494993 FLT4P35916 1363 aa30.78■■■□□ 2.52
HDDC3-203ENST00000494993 KIF24Q5T7B8 1368 aa30.77■■■□□ 2.52
HDDC3-203ENST00000494993 SYT17Q9BSW7 474 aa30.76■■■□□ 2.51
HDDC3-203ENST00000494993 TIMELESSQ9UNS1 1208 aa30.76■■■□□ 2.51
HDDC3-203ENST00000494993 NSD3Q9BZ95 1437 aa30.75■■■□□ 2.51
HDDC3-203ENST00000494993 HSP90AB2PQ58FF8 381 aa30.75■■■□□ 2.51
HDDC3-203ENST00000494993 RAPGEF4Q8WZA2 1011 aa30.75■■■□□ 2.51
HDDC3-203ENST00000494993 CARD14Q9BXL6 1004 aa30.75■■■□□ 2.51
HDDC3-203ENST00000494993 ANKRD26Q9UPS8 1709 aa30.74■■■□□ 2.51
HDDC3-203ENST00000494993 MAP2P11137 1827 aaKnown RBP30.74■■■□□ 2.51
HDDC3-203ENST00000494993 ARXQ96QS3 562 aa30.73■■■□□ 2.51
HDDC3-203ENST00000494993 CHD4Q14839 1912 aa30.73■■■□□ 2.51
HDDC3-203ENST00000494993 TATP17735 454 aaPredicted RBP30.72■■■□□ 2.51
HDDC3-203ENST00000494993 KCNQ4P56696 695 aa30.72■■■□□ 2.51
HDDC3-203ENST00000494993 PNPLA7Q6ZV29 1317 aa30.71■■■□□ 2.51
HDDC3-203ENST00000494993 PKD1L3Q7Z443 1732 aa30.7■■■□□ 2.51
HDDC3-203ENST00000494993 SLC16A10Q8TF71 515 aa30.7■■■□□ 2.51
HDDC3-203ENST00000494993 CLSPNQ9HAW4 1339 aa30.7■■■□□ 2.5
HDDC3-203ENST00000494993 MAP3K5Q99683 1374 aa30.69■■■□□ 2.5
HDDC3-203ENST00000494993 ITGB4P16144 1822 aa30.69■■■□□ 2.5
HDDC3-203ENST00000494993 TFCP2L1Q9NZI6 479 aa30.68■■■□□ 2.5
HDDC3-203ENST00000494993 PCDH11XQ9BZA7 1347 aa30.68■■■□□ 2.5
HDDC3-203ENST00000494993 PCDH11YQ9BZA8 1340 aa30.68■■■□□ 2.5
HDDC3-203ENST00000494993 CCNL1Q9UK58 526 aaPredicted RBP30.67■■■□□ 2.5
HDDC3-203ENST00000494993 EMILIN1Q9Y6C2 1016 aa30.67■■■□□ 2.5
HDDC3-203ENST00000494993 C5P01031 1676 aa30.67■■■□□ 2.5
HDDC3-203ENST00000494993 TOGARAM1Q9Y4F4 1720 aa30.67■■■□□ 2.5
HDDC3-203ENST00000494993 TAF1LQ8IZX4 1826 aa30.66■■■□□ 2.5
HDDC3-203ENST00000494993 UTRNP46939 3433 aa30.65■■■□□ 2.5
HDDC3-203ENST00000494993 NCAPD2Q15021 1401 aa30.64■■■□□ 2.49
HDDC3-203ENST00000494993 PCGF6Q9BYE7 350 aa30.62■■■□□ 2.49
HDDC3-203ENST00000494993 POLD1P28340 1107 aa30.61■■■□□ 2.49
HDDC3-203ENST00000494993 PPM1GO15355 546 aaPredicted RBP30.59■■■□□ 2.49
HDDC3-203ENST00000494993 CYP27B1O15528 508 aa30.59■■■□□ 2.49
HDDC3-203ENST00000494993 WASHC2AQ641Q2 1341 aa30.57■■■□□ 2.48
HDDC3-203ENST00000494993 PALLDQ8WX93 1383 aa30.55■■■□□ 2.48
HDDC3-203ENST00000494993 MPRIPQ6WCQ1 1025 aa30.54■■■□□ 2.48
HDDC3-203ENST00000494993 KLHL34Q8N239 644 aa30.54■■■□□ 2.48
HDDC3-203ENST00000494993 COL23A1Q86Y22 540 aaPredicted RBP30.53■■■□□ 2.48
HDDC3-203ENST00000494993 POLR3GLQ9BT43 218 aa30.53■■■□□ 2.48
HDDC3-203ENST00000494993 C4BP0C0L5 1744 aa30.51■■■□□ 2.47
HDDC3-203ENST00000494993 MSH5O43196 834 aa30.51■■■□□ 2.47
HDDC3-203ENST00000494993 EYA1Q99502 592 aa30.51■■■□□ 2.47
HDDC3-203ENST00000494993 POLKQ9UBT6 870 aa30.51■■■□□ 2.47
HDDC3-203ENST00000494993 HMGB2P26583 209 aaKnown RBP30.5■■■□□ 2.47
HDDC3-203ENST00000494993 SPG7Q9UQ90 795 aa30.5■■■□□ 2.47
HDDC3-203ENST00000494993 NKX1-1Q15270 411 aaPredicted RBP30.49■■■□□ 2.47
HDDC3-203ENST00000494993 UBR3Q6ZT12 1888 aa30.48■■■□□ 2.47
HDDC3-203ENST00000494993 GPR162Q16538 588 aa30.48■■■□□ 2.47
HDDC3-203ENST00000494993 ZNF784Q8NCA9 323 aaPredicted RBP30.48■■■□□ 2.47
HDDC3-203ENST00000494993 SMARCC1Q92922 1105 aaPredicted RBP30.48■■■□□ 2.47
HDDC3-203ENST00000494993 EIF4G2P78344 907 aaKnown RBP eCLIP30.47■■■□□ 2.47
HDDC3-203ENST00000494993 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.46■■■□□ 2.47
HDDC3-203ENST00000494993 PIGBQ92521 554 aa30.45■■■□□ 2.47
HDDC3-203ENST00000494993 HSPA5P11021 654 aaKnown RBP30.44■■■□□ 2.46
HDDC3-203ENST00000494993 FLAD1Q8NFF5 587 aa30.44■■■□□ 2.46
HDDC3-203ENST00000494993 NLGN2Q8NFZ4 835 aa30.44■■■□□ 2.46
HDDC3-203ENST00000494993 TNNT2P45379 298 aaPredicted RBP30.43■■■□□ 2.46
HDDC3-203ENST00000494993 MSL1Q68DK7 614 aa30.43■■■□□ 2.46
HDDC3-203ENST00000494993 EIF4A2Q14240 407 aaKnown RBP30.42■■■□□ 2.46
HDDC3-203ENST00000494993 GOLGB1Q14789 3259 aaKnown RBP30.41■■■□□ 2.46
HDDC3-203ENST00000494993 PELP1Q8IZL8 1130 aaKnown RBP30.4■■■□□ 2.46
HDDC3-203ENST00000494993 PHKG2P15735 406 aa30.39■■■□□ 2.46
HDDC3-203ENST00000494993 IFNL2Q8IZJ0 200 aa30.39■■■□□ 2.46
HDDC3-203ENST00000494993 AK7Q96M32 723 aa30.39■■■□□ 2.46
HDDC3-203ENST00000494993 PANK3Q9H999 370 aa30.39■■■□□ 2.46
HDDC3-203ENST00000494993 PLEKHG2Q9H7P9 1386 aa30.39■■■□□ 2.45
HDDC3-203ENST00000494993 TMOD3Q9NYL9 352 aa30.38■■■□□ 2.45
HDDC3-203ENST00000494993 LOC102724428A0A0B4J2F2 783 aa30.35■■■□□ 2.45
HDDC3-203ENST00000494993 SIK1P57059 783 aa30.35■■■□□ 2.45
HDDC3-203ENST00000494993 AMIGO3Q86WK7 504 aa30.35■■■□□ 2.45
HDDC3-203ENST00000494993 IGSF1Q8N6C5 1336 aa30.35■■■□□ 2.45
HDDC3-203ENST00000494993 CCER1Q8TC90 406 aaPredicted RBP30.33■■■□□ 2.45
HDDC3-203ENST00000494993 ASAP1Q9ULH1 1129 aa30.33■■■□□ 2.45
HDDC3-203ENST00000494993 LINC00116Q8NCU8 138 aa30.32■■■□□ 2.44
HDDC3-203ENST00000494993 PHF14O94880 888 aa30.31■■■□□ 2.44
HDDC3-203ENST00000494993 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.3■■■□□ 2.44
HDDC3-203ENST00000494993 YBX3P16989 372 aaKnown RBP eCLIP30.3■■■□□ 2.447e-9■□□□□ 10.7
HDDC3-203ENST00000494993 CD2APQ9Y5K6 639 aa30.3■■■□□ 2.44
HDDC3-203ENST00000494993 ZNF831Q5JPB2 1677 aa30.3■■■□□ 2.44
HDDC3-203ENST00000494993 SSFA2P28290 1259 aa30.29■■■□□ 2.44
HDDC3-203ENST00000494993 SMIM5Q71RC9 77 aa30.29■■■□□ 2.44
HDDC3-203ENST00000494993 ITPK1Q13572 414 aa30.28■■■□□ 2.44
HDDC3-203ENST00000494993 ATG3Q9NT62 314 aa30.28■■■□□ 2.44
HDDC3-203ENST00000494993 GRIN3BO60391 1043 aa30.27■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms