RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-208ENST00000494654 GTPBP4Q9BZE4 634 aaKnown RBP3.45□□□□□ -1.86
MDC1-208ENST00000494654 MYH16Q9H6N6 1097 aa3.45□□□□□ -1.86
MDC1-208ENST00000494654 ANKRD30BQ9BXX2 1392 aa3.45□□□□□ -1.86
MDC1-208ENST00000494654 GRIN2AQ12879 1464 aa3.45□□□□□ -1.86
MDC1-208ENST00000494654 SCAF11Q99590 1463 aaKnown RBP3.45□□□□□ -1.86
MDC1-208ENST00000494654 SHANK2Q9UPX8 1470 aa3.45□□□□□ -1.86
MDC1-208ENST00000494654 DAPK1P53355 1430 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 CDK13Q14004 1512 aaKnown RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 DUOX2Q9NRD8 1548 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 QRICH2Q9H0J4 1663 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 TTC37Q6PGP7 1564 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 NKTRP30414 1462 aaKnown RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 IQSEC2Q5JU85 1478 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 CCDC141Q6ZP82 1450 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 UQCRHLA0A096LP55 91 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 IRF6O14896 467 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 ZNF500O60304 480 aaPredicted RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 UQCRHP07919 91 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 MSNP26038 577 aaKnown RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 TNNT2P45379 298 aaPredicted RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 SLC4A3P48751 1232 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 PTPN5P54829 565 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 SLC20A2Q08357 652 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 PACS2Q86VP3 889 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 MRPL50Q8N5N7 158 aaKnown RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 WNT2BQ93097 391 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 RNF166Q96A37 237 aaPredicted RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 CHMP4BQ9H444 224 aaKnown RBP3.44□□□□□ -1.86
MDC1-208ENST00000494654 PCDH10Q9P2E7 1040 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 DLG5Q8TDM6 1919 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 KIF1BO60333 1816 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 KIAA0556O60303 1618 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 ABCA9Q8IUA7 1624 aa3.44□□□□□ -1.86
MDC1-208ENST00000494654 ADAMTS12P58397 1594 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 MAST1Q9Y2H9 1570 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 ARID3CA6NKF2 412 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 SLC10A3P09131 477 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 ZSCAN20P17040 1043 aaPredicted RBP3.43□□□□□ -1.86
MDC1-208ENST00000494654 BRD2P25440 801 aaKnown RBP3.43□□□□□ -1.86
MDC1-208ENST00000494654 MDM2Q00987 491 aaPredicted RBP3.43□□□□□ -1.86
MDC1-208ENST00000494654 MAP2K5Q13163 448 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 RALBP1Q15311 655 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 FAM98CQ17RN3 349 aaKnown RBP3.43□□□□□ -1.86
MDC1-208ENST00000494654 CSPP1Q1MSJ5 1256 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 SASS6Q6UVJ0 657 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 THSD4Q6ZMP0 1018 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 TEX2Q8IWB9 1127 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 CERKQ8TCT0 537 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 ANP32BQ92688 251 aaKnown RBP3.43□□□□□ -1.86
MDC1-208ENST00000494654 WBP1LQ9NX94 342 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 CHMP5Q9NZZ3 219 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 ZHX1Q9UKY1 873 aaPredicted RBP3.43□□□□□ -1.86
MDC1-208ENST00000494654 PREX2Q70Z35 1606 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 PIK3C2GO75747 1445 aa3.43□□□□□ -1.86
MDC1-208ENST00000494654 ATP10AO60312 1499 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 NBPF26B4DH59 902 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 TRAK2O60296 914 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 RNF40O75150 1001 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 HSP90AB1P08238 724 aaKnown RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 CDK11BP21127 795 aaKnown RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 MCM5P33992 734 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 FTSJ3Q8IY81 847 aaKnown RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 TBC1D32Q96NH3 1257 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 SLKQ9H2G2 1235 aaPredicted RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 GPBP1L1Q9HC44 474 aaPredicted RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 TMEM51Q9NW97 253 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 RBM27Q9P2N5 1060 aaKnown RBP3.42□□□□□ -1.86
MDC1-208ENST00000494654 ASXL1Q8IXJ9 1541 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 NUP160Q12769 1436 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 PREX1Q8TCU6 1659 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 CACNA1FO60840 1977 aa3.42□□□□□ -1.86
MDC1-208ENST00000494654 KNDC1Q76NI1 1749 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 CARMIL1Q5VZK9 1371 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 AKAP12Q02952 1782 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 SOWAHBA6NEL2 793 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 TULP1O00294 542 aaPredicted RBP3.41□□□□□ -1.86
MDC1-208ENST00000494654 TRIM66O15016 1216 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 GTF2F1P35269 517 aaKnown RBP eCLIP3.41□□□□□ -1.86
MDC1-208ENST00000494654 APLP1P51693 650 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 SKOR2Q2VWA4 1001 aaPredicted RBP3.41□□□□□ -1.86
MDC1-208ENST00000494654 NLRP13Q86W25 1043 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 KRI1Q8N9T8 703 aaKnown RBP3.41□□□□□ -1.86
MDC1-208ENST00000494654 TMC1Q8TDI8 760 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 HLA-CQ95604 372 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 PDLIM2Q96JY6 352 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 NBPF3Q9H094 633 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 TMEM134Q9H6X4 195 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 UPF2Q9HAU5 1272 aaKnown RBP3.41□□□□□ -1.86
MDC1-208ENST00000494654 FAM13BQ9NYF5 915 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 HPS5Q9UPZ3 1129 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 PTPRGP23470 1445 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 FRMPD1Q5SYB0 1578 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 NEURL4Q96JN8 1562 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 MINK1Q8N4C8 1332 aaPredicted RBP3.41□□□□□ -1.86
MDC1-208ENST00000494654 PLB1Q6P1J6 1458 aa3.41□□□□□ -1.86
MDC1-208ENST00000494654 IGF1RP08069 1367 aa3.4□□□□□ -1.86
MDC1-208ENST00000494654 GOLGA8CPA6NN73 597 aa3.4□□□□□ -1.87
MDC1-208ENST00000494654 DDIT3P35638 169 aa3.4□□□□□ -1.87
MDC1-208ENST00000494654 NASPP49321 788 aaPredicted RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms