RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 DCAF5Q96JK2 942 aa9.68□□□□□ -0.86
SMC4-224ENST00000494612 ZNF395Q9H8N7 513 aaPredicted RBP9.68□□□□□ -0.86
SMC4-224ENST00000494612 GOPCQ9HD26 462 aa9.68□□□□□ -0.86
SMC4-224ENST00000494612 NBPF20Q3BBV1 942 aa9.67□□□□□ -0.86
SMC4-224ENST00000494612 TRIM34Q9BYJ4 488 aa9.67□□□□□ -0.86
SMC4-224ENST00000494612 TMPRSS4Q9NRS4 437 aa9.67□□□□□ -0.86
SMC4-224ENST00000494612 CNTNAP5Q8WYK1 1306 aa9.66□□□□□ -0.86
SMC4-224ENST00000494612 ESPNB1AK53 854 aa9.66□□□□□ -0.86
SMC4-224ENST00000494612 LILRA1O75019 489 aa9.66□□□□□ -0.86
SMC4-224ENST00000494612 ADD1P35611 737 aaKnown RBP9.66□□□□□ -0.86
SMC4-224ENST00000494612 KDF1Q8NAX2 398 aaPredicted RBP9.66□□□□□ -0.86
SMC4-224ENST00000494612 PNMA1Q8ND90 353 aa9.66□□□□□ -0.86
SMC4-224ENST00000494612 NEDD1Q8NHV4 660 aa9.66□□□□□ -0.86
SMC4-224ENST00000494612 ERVH48-1M5A8F1 160 aa9.65□□□□□ -0.86
SMC4-224ENST00000494612 GAS6Q14393 721 aa9.65□□□□□ -0.86
SMC4-224ENST00000494612 ZNF784Q8NCA9 323 aaPredicted RBP9.65□□□□□ -0.86
SMC4-224ENST00000494612 FOXR1Q6PIV2 292 aa9.64□□□□□ -0.87
SMC4-224ENST00000494612 DZIP3Q86Y13 1208 aaKnown RBP9.64□□□□□ -0.87
SMC4-224ENST00000494612 MBIPQ9NS73 344 aa9.64□□□□□ -0.87
SMC4-224ENST00000494612 TMEM259Q4ZIN3 620 aa9.63□□□□□ -0.87
SMC4-224ENST00000494612 LYSMD3Q7Z3D4 306 aa9.63□□□□□ -0.87
SMC4-224ENST00000494612 ADH1AP07327 375 aa9.62□□□□□ -0.87
SMC4-224ENST00000494612 BCRP11274 1271 aa9.61□□□□□ -0.87
SMC4-224ENST00000494612 PTGIRP43119 386 aa9.61□□□□□ -0.87
SMC4-224ENST00000494612 GMCL1Q96IK5 515 aa9.61□□□□□ -0.87
SMC4-224ENST00000494612 CUEDC1Q9NWM3 386 aaPredicted RBP9.61□□□□□ -0.87
SMC4-224ENST00000494612 RAB15P59190 212 aa9.6□□□□□ -0.87
SMC4-224ENST00000494612 FOXD4L5Q5VV16 416 aaPredicted RBP9.6□□□□□ -0.87
SMC4-224ENST00000494612 SEPT12Q8IYM1 358 aa9.6□□□□□ -0.87
SMC4-224ENST00000494612 PCMTD1Q96MG8 357 aaPredicted RBP9.6□□□□□ -0.87
SMC4-224ENST00000494612 IGF1RP08069 1367 aa9.6□□□□□ -0.87
SMC4-224ENST00000494612 K7ELQ4 463 aaPredicted RBP9.59□□□□□ -0.87
SMC4-224ENST00000494612 PROCP04070 461 aa9.59□□□□□ -0.87
SMC4-224ENST00000494612 GJD4Q96KN9 370 aaPredicted RBP9.59□□□□□ -0.87
SMC4-224ENST00000494612 ZBBXA8MT70 800 aa9.57□□□□□ -0.88
SMC4-224ENST00000494612 ITGB2P05107 769 aa9.57□□□□□ -0.88
SMC4-224ENST00000494612 PRICKLE2Q7Z3G6 844 aa9.57□□□□□ -0.88
SMC4-224ENST00000494612 TRIM22Q8IYM9 498 aa9.57□□□□□ -0.88
SMC4-224ENST00000494612 ZNF837Q96EG3 531 aaPredicted RBP9.57□□□□□ -0.88
SMC4-224ENST00000494612 GPR25O00155 361 aa9.56□□□□□ -0.88
SMC4-224ENST00000494612 GIGYF1O75420 1035 aaPredicted RBP9.56□□□□□ -0.88
SMC4-224ENST00000494612 IL27Q8NEV9 243 aa9.56□□□□□ -0.88
SMC4-224ENST00000494612 FBXO45P0C2W1 286 aa9.55□□□□□ -0.88
SMC4-224ENST00000494612 RIPOR1Q6ZS17 1223 aa9.55□□□□□ -0.88
SMC4-224ENST00000494612 TRIM52Q96A61 297 aa9.55□□□□□ -0.88
SMC4-224ENST00000494612 TRERF1Q96PN7 1200 aa9.55□□□□□ -0.88
SMC4-224ENST00000494612 CYLDQ9NQC7 956 aa9.55□□□□□ -0.88
SMC4-224ENST00000494612 NSFL1CQ9UNZ2 370 aaKnown RBP9.55□□□□□ -0.88
SMC4-224ENST00000494612 RHOQP17081 205 aa9.54□□□□□ -0.88
SMC4-224ENST00000494612 RNF144AP50876 292 aaPredicted RBP9.54□□□□□ -0.88
SMC4-224ENST00000494612 NEUROD2Q15784 382 aa9.54□□□□□ -0.88
SMC4-224ENST00000494612 LRRC4BQ9NT99 713 aa9.54□□□□□ -0.88
SMC4-224ENST00000494612 H7C1W4 665 aa9.53□□□□□ -0.88
SMC4-224ENST00000494612 ACDQ96AP0 544 aa9.53□□□□□ -0.88
SMC4-224ENST00000494612 BRPF1P55201 1214 aaPredicted RBP9.52□□□□□ -0.89
SMC4-224ENST00000494612 CCDC125Q86Z20 511 aa9.52□□□□□ -0.89
SMC4-224ENST00000494612 PCDHB9Q9Y5E1 797 aa9.52□□□□□ -0.89
SMC4-224ENST00000494612 DBN1Q16643 649 aa9.51□□□□□ -0.89
SMC4-224ENST00000494612 Q8N3U1 123 aa9.51□□□□□ -0.89
SMC4-224ENST00000494612 GPR37L1O60883 481 aa9.5□□□□□ -0.89
SMC4-224ENST00000494612 MX2P20592 715 aa9.5□□□□□ -0.89
SMC4-224ENST00000494612 BAG6P46379 1132 aa9.5□□□□□ -0.89
SMC4-224ENST00000494612 ERVK-9P63128 1117 aa9.5□□□□□ -0.89
SMC4-224ENST00000494612 GTPBP3Q969Y2 492 aaKnown RBP9.5□□□□□ -0.89
SMC4-224ENST00000494612 KRTAP4-8Q9BYQ9 185 aa9.5□□□□□ -0.89
SMC4-224ENST00000494612 ATP5J2-PTCD1G3V325 749 aa9.49□□□□□ -0.89
SMC4-224ENST00000494612 BANK1Q8NDB2 785 aa9.49□□□□□ -0.89
SMC4-224ENST00000494612 SOCS7O14512 581 aa9.48□□□□□ -0.89
SMC4-224ENST00000494612 GPC1P35052 558 aa9.48□□□□□ -0.89
SMC4-224ENST00000494612 NR1H3Q13133 447 aa9.48□□□□□ -0.89
SMC4-224ENST00000494612 GAS2L1Q99501 681 aaPredicted RBP9.48□□□□□ -0.89
SMC4-224ENST00000494612 DYRK1BQ9Y463 629 aa9.48□□□□□ -0.89
SMC4-224ENST00000494612 A0A1W2PRU2 124 aa9.47□□□□□ -0.89
SMC4-224ENST00000494612 OIP5O43482 229 aa9.47□□□□□ -0.89
SMC4-224ENST00000494612 MCCD1P59942 119 aaPredicted RBP9.47□□□□□ -0.89
SMC4-224ENST00000494612 ALYREFQ86V81 257 aaKnown RBP9.47□□□□□ -0.89
SMC4-224ENST00000494612 MEN1O00255 615 aa9.46□□□□□ -0.9
SMC4-224ENST00000494612 RNF20Q5VTR2 975 aa9.46□□□□□ -0.9
SMC4-224ENST00000494612 CC2D2BQ6DHV5 1058 aa9.46□□□□□ -0.9
SMC4-224ENST00000494612 MTMR14Q8NCE2 650 aa9.46□□□□□ -0.9
SMC4-224ENST00000494612 MKL2Q9ULH7 1088 aa9.46□□□□□ -0.9
SMC4-224ENST00000494612 FURINP09958 794 aa9.45□□□□□ -0.9
SMC4-224ENST00000494612 SCTRP47872 440 aa9.45□□□□□ -0.9
SMC4-224ENST00000494612 PSMG3-AS1Q96PY0 264 aa9.45□□□□□ -0.9
SMC4-224ENST00000494612 KRBA1A5PL33 1030 aa9.44□□□□□ -0.9
SMC4-224ENST00000494612 MAP2K3P46734 347 aa9.44□□□□□ -0.9
SMC4-224ENST00000494612 OXCT2Q9BYC2 517 aaPredicted RBP9.44□□□□□ -0.9
SMC4-224ENST00000494612 GRIP2Q9C0E4 1043 aa9.44□□□□□ -0.9
SMC4-224ENST00000494612 TRAK2O60296 914 aa9.43□□□□□ -0.9
SMC4-224ENST00000494612 SNRPNP63162 240 aaKnown RBP9.43□□□□□ -0.9
SMC4-224ENST00000494612 SLC27A3Q5K4L6 730 aa9.43□□□□□ -0.9
SMC4-224ENST00000494612 POU4F2Q12837 409 aa9.42□□□□□ -0.9
SMC4-224ENST00000494612 CLN3Q13286 438 aa9.42□□□□□ -0.9
SMC4-224ENST00000494612 NLRP3Q96P20 1036 aa9.42□□□□□ -0.9
SMC4-224ENST00000494612 OSBPL3Q9H4L5 887 aa9.42□□□□□ -0.9
SMC4-224ENST00000494612 RRAGCQ9HB90 399 aa9.42□□□□□ -0.9
SMC4-224ENST00000494612 SNRKQ9NRH2 765 aa9.42□□□□□ -0.9
SMC4-224ENST00000494612 ZNF592Q92610 1267 aa9.41□□□□□ -0.9
SMC4-224ENST00000494612 NUCKS1Q9H1E3 243 aaKnown RBP9.41□□□□□ -0.9
SMC4-224ENST00000494612 SPATA31C2B4DYI2 1134 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms