RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 MYT1Q01538 1121 aa8.42□□□□□ -1.06
PTCD3-219ENST00000494323 PTPRNQ16849 979 aa8.42□□□□□ -1.06
PTCD3-219ENST00000494323 LRRN4Q8WUT4 740 aa8.42□□□□□ -1.06
PTCD3-219ENST00000494323 ZFYVE16Q7Z3T8 1539 aa8.42□□□□□ -1.06
PTCD3-219ENST00000494323 ARHGEF40Q8TER5 1519 aa8.42□□□□□ -1.06
PTCD3-219ENST00000494323 HECW1Q76N89 1606 aa8.42□□□□□ -1.06
PTCD3-219ENST00000494323 ATP10AO60312 1499 aa8.41□□□□□ -1.06
PTCD3-219ENST00000494323 TTC24A2A3L6 582 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-219ENST00000494323 PROSER2Q86WR7 435 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-219ENST00000494323 WWC1Q8IX03 1113 aa8.41□□□□□ -1.06
PTCD3-219ENST00000494323 POM121Q96HA1 1249 aa8.41□□□□□ -1.06
PTCD3-219ENST00000494323 GJD4Q96KN9 370 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-219ENST00000494323 HMX1Q9NP08 348 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-219ENST00000494323 TOR4AQ9NXH8 423 aa8.41□□□□□ -1.06
PTCD3-219ENST00000494323 NDUFB9Q9Y6M9 179 aa8.41□□□□□ -1.06
PTCD3-219ENST00000494323 MAGI2Q86UL8 1455 aa8.4□□□□□ -1.06
PTCD3-219ENST00000494323 PER1O15534 1290 aaPredicted RBP8.4□□□□□ -1.06
PTCD3-219ENST00000494323 WNT7BP56706 349 aa8.4□□□□□ -1.06
PTCD3-219ENST00000494323 GDPD2Q9HCC8 539 aa8.4□□□□□ -1.06
PTCD3-219ENST00000494323 EFCAB5A4FU69 1503 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 TRAK2O60296 914 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 PNMA1Q8ND90 353 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 MRGPRX2Q96LB1 330 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 TRIM34Q9BYJ4 488 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 CFAP74Q9C0B2 1584 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 ZMYM4Q5VZL5 1548 aa8.39□□□□□ -1.07
PTCD3-219ENST00000494323 RC3H1Q5TC82 1133 aaKnown RBP8.38□□□□□ -1.07
PTCD3-219ENST00000494323 PTCRAQ6ISU1 281 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-219ENST00000494323 SNIP1Q8TAD8 396 aaKnown RBP8.38□□□□□ -1.07
PTCD3-219ENST00000494323 TBC1D2BQ9UPU7 963 aa8.38□□□□□ -1.07
PTCD3-219ENST00000494323 ARHGAP35Q9NRY4 1499 aa8.38□□□□□ -1.07
PTCD3-219ENST00000494323 FER1L4A9Z1Z3 1794 aa8.38□□□□□ -1.07
PTCD3-219ENST00000494323 FMN1Q68DA7 1419 aa8.37□□□□□ -1.07
PTCD3-219ENST00000494323 SKOR1P84550 965 aa8.37□□□□□ -1.07
PTCD3-219ENST00000494323 KCNH2Q12809 1159 aa8.37□□□□□ -1.07
PTCD3-219ENST00000494323 FNBP4Q8N3X1 1017 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-219ENST00000494323 UNC93B1Q9H1C4 597 aa8.37□□□□□ -1.07
PTCD3-219ENST00000494323 ESF1Q9H501 851 aaKnown RBP8.37□□□□□ -1.07
PTCD3-219ENST00000494323 EVA1BQ9NVM1 165 aa8.37□□□□□ -1.07
PTCD3-219ENST00000494323 ZNF777Q9ULD5 760 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-219ENST00000494323 SETD1BQ9UPS6 1966 aaKnown RBP8.37□□□□□ -1.07
PTCD3-219ENST00000494323 C9orf84Q5VXU9 1444 aa8.37□□□□□ -1.07
PTCD3-219ENST00000494323 ABL2P42684 1182 aa8.36□□□□□ -1.07
PTCD3-219ENST00000494323 NR6A1Q15406 480 aa8.36□□□□□ -1.07
PTCD3-219ENST00000494323 ZNF787Q6DD87 383 aa8.36□□□□□ -1.07
PTCD3-219ENST00000494323 KIF14Q15058 1648 aa8.36□□□□□ -1.07
PTCD3-219ENST00000494323 ARHGAP5Q13017 1502 aa8.35□□□□□ -1.07
PTCD3-219ENST00000494323 ARHGEF12Q9NZN5 1544 aa8.35□□□□□ -1.07
PTCD3-219ENST00000494323 ST8SIA5O15466 376 aa8.35□□□□□ -1.07
PTCD3-219ENST00000494323 F12P00748 615 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-219ENST00000494323 TROQ12816 1431 aaPredicted RBP8.35□□□□□ -1.07
PTCD3-219ENST00000494323 MYO5CQ9NQX4 1742 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 AVPP01185 164 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 CTHP32929 405 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 ILDR2Q71H61 639 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 CRIPAKQ8N1N5 446 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 EHBP1Q8NDI1 1231 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 AAASQ9NRG9 546 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 ZNF330Q9Y3S2 320 aaPredicted RBP8.34□□□□□ -1.07
PTCD3-219ENST00000494323 TRAPPC8Q9Y2L5 1435 aa8.34□□□□□ -1.07
PTCD3-219ENST00000494323 ZNF518AQ6AHZ1 1483 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 SMPD1P17405 629 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 CLIP1P30622 1438 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 HNRNPMP52272 730 aaKnown RBP eCLIP8.33□□□□□ -1.08
PTCD3-219ENST00000494323 WASHC4Q2M389 1173 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 CTC1Q2NKJ3 1217 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 LINC01559Q495D7 138 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 EPS8L1Q8TE68 723 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 DISP3Q9P2K9 1392 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 STRCQ7RTU9 1775 aa8.33□□□□□ -1.08
PTCD3-219ENST00000494323 ZC3H4Q9UPT8 1303 aaKnown RBP8.32□□□□□ -1.08
PTCD3-219ENST00000494323 UHRF1BP1Q6BDS2 1440 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 J3QL48 77 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 AXIN1O15169 862 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 SH3BP2P78314 561 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 ARMC2Q8NEN0 867 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 BAP1Q92560 729 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 MAP10Q9P2G4 905 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 LRRIQ1Q96JM4 1722 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 CDC42BPBQ9Y5S2 1711 aa8.32□□□□□ -1.08
PTCD3-219ENST00000494323 PREX1Q8TCU6 1659 aa8.31□□□□□ -1.08
PTCD3-219ENST00000494323 GPR37L1O60883 481 aa8.31□□□□□ -1.08
PTCD3-219ENST00000494323 IRF5Q13568 498 aa8.31□□□□□ -1.08
PTCD3-219ENST00000494323 FKBPLQ9UIM3 349 aa8.31□□□□□ -1.08
PTCD3-219ENST00000494323 ALDH1A1P00352 501 aa8.3□□□□□ -1.08
PTCD3-219ENST00000494323 ZNF511Q8NB15 262 aa8.3□□□□□ -1.08
PTCD3-219ENST00000494323 ARID3AQ99856 593 aa8.3□□□□□ -1.08
PTCD3-219ENST00000494323 MLH3Q9UHC1 1453 aa8.3□□□□□ -1.08
PTCD3-219ENST00000494323 DIP2CQ9Y2E4 1556 aa8.3□□□□□ -1.08
PTCD3-219ENST00000494323 SMCPP49901 116 aaPredicted RBP8.29□□□□□ -1.08
PTCD3-219ENST00000494323 GGT6Q6P531 493 aa8.29□□□□□ -1.08
PTCD3-219ENST00000494323 GPKOWQ92917 476 aaPredicted RBP eCLIP8.29□□□□□ -1.082e-6■■■□□ 15.9
PTCD3-219ENST00000494323 KDM5CP41229 1560 aa8.29□□□□□ -1.08
PTCD3-219ENST00000494323 CASKIN1Q8WXD9 1431 aa8.29□□□□□ -1.08
PTCD3-219ENST00000494323 SPAG9O60271 1321 aaKnown RBP8.29□□□□□ -1.08
PTCD3-219ENST00000494323 C3P01024 1663 aa8.28□□□□□ -1.08
PTCD3-219ENST00000494323 ZMYM3Q14202 1370 aa8.28□□□□□ -1.08
PTCD3-219ENST00000494323 SIAH2O43255 324 aa8.28□□□□□ -1.08
PTCD3-219ENST00000494323 CCDC82Q8N4S0 544 aa8.28□□□□□ -1.08
PTCD3-219ENST00000494323 CFDP1Q9UEE9 299 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms