RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 IL16Q14005 1332 aa16.62■□□□□ 0.25
VPS52-220ENST00000493674 CRB1P82279 1406 aa16.62■□□□□ 0.25
VPS52-220ENST00000493674 NEUROD2Q15784 382 aa16.61■□□□□ 0.25
VPS52-220ENST00000493674 OVOS2A0A0G2JMS6 1433 aa16.61■□□□□ 0.25
VPS52-220ENST00000493674 CACNA1FO60840 1977 aa16.6■□□□□ 0.25
VPS52-220ENST00000493674 MTHFSDQ2M296 383 aaKnown RBP16.6■□□□□ 0.25
VPS52-220ENST00000493674 DUSP27Q5VZP5 1158 aa16.6■□□□□ 0.25
VPS52-220ENST00000493674 GAS2L2Q8NHY3 880 aa16.6■□□□□ 0.25
VPS52-220ENST00000493674 SPINK5Q9NQ38 1064 aaPredicted RBP16.6■□□□□ 0.25
VPS52-220ENST00000493674 RGS17Q9UGC6 210 aaPredicted RBP16.6■□□□□ 0.25
VPS52-220ENST00000493674 AFF2P51816 1311 aa16.6■□□□□ 0.25
VPS52-220ENST00000493674 E9PSI1 815 aa16.59■□□□□ 0.25
VPS52-220ENST00000493674 LMOD3Q0VAK6 560 aa16.59■□□□□ 0.25
VPS52-220ENST00000493674 C8orf37Q96NL8 207 aa16.59■□□□□ 0.25
VPS52-220ENST00000493674 DISP2A7MBM2 1401 aa16.59■□□□□ 0.25
VPS52-220ENST00000493674 ADAMTS2O95450 1211 aa16.58■□□□□ 0.24
VPS52-220ENST00000493674 CARD10Q9BWT7 1032 aa16.58■□□□□ 0.24
VPS52-220ENST00000493674 NLRP2Q9NX02 1062 aa16.58■□□□□ 0.24
VPS52-220ENST00000493674 MAP3K5Q99683 1374 aa16.58■□□□□ 0.24
VPS52-220ENST00000493674 TOGARAM1Q9Y4F4 1720 aa16.58■□□□□ 0.24
VPS52-220ENST00000493674 ITGB4P16144 1822 aa16.58■□□□□ 0.24
VPS52-220ENST00000493674 HTATSF1O43719 755 aaKnown RBP16.57■□□□□ 0.24
VPS52-220ENST00000493674 FNBP4Q8N3X1 1017 aaPredicted RBP16.57■□□□□ 0.24
VPS52-220ENST00000493674 BTG4Q9NY30 223 aa16.57■□□□□ 0.24
VPS52-220ENST00000493674 ATRNO75882 1429 aa16.56■□□□□ 0.24
VPS52-220ENST00000493674 CSB-PGBD3P0DP91 1061 aa16.56■□□□□ 0.24
VPS52-220ENST00000493674 NGLY1Q96IV0 654 aa16.56■□□□□ 0.24
VPS52-220ENST00000493674 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.56■□□□□ 0.242e-8■■■■□ 19.8
VPS52-220ENST00000493674 MRC1P22897 1456 aa16.55■□□□□ 0.24
VPS52-220ENST00000493674 BCL9LQ86UU0 1499 aa16.55■□□□□ 0.24
VPS52-220ENST00000493674 CEMIPQ8WUJ3 1361 aa16.55■□□□□ 0.24
VPS52-220ENST00000493674 AMOTQ4VCS5 1084 aa16.55■□□□□ 0.24
VPS52-220ENST00000493674 LARP1Q6PKG0 1096 aaKnown RBP16.55■□□□□ 0.24
VPS52-220ENST00000493674 PAPPAQ13219 1627 aa16.55■□□□□ 0.24
VPS52-220ENST00000493674 ZNF853P0CG23 659 aa16.54■□□□□ 0.24
VPS52-220ENST00000493674 PLEKHO1Q53GL0 409 aaPredicted RBP16.54■□□□□ 0.24
VPS52-220ENST00000493674 UBR2Q8IWV8 1755 aa16.54■□□□□ 0.24
VPS52-220ENST00000493674 THSD7AQ9UPZ6 1657 aa16.53■□□□□ 0.24
VPS52-220ENST00000493674 CALD1Q05682 793 aaKnown RBP16.53■□□□□ 0.24
VPS52-220ENST00000493674 TOM1L2Q6ZVM7 507 aa16.53■□□□□ 0.24
VPS52-220ENST00000493674 RNF123Q5XPI4 1314 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 FANCIQ9NVI1 1328 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 GNAT3A8MTJ3 354 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 POTEAQ6S8J7 498 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 RAPGEF4Q8WZA2 1011 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 THUMPD2Q9BTF0 503 aaKnown RBP16.52■□□□□ 0.24
VPS52-220ENST00000493674 IFT57Q9NWB7 429 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 USP21Q9UK80 565 aa16.52■□□□□ 0.24
VPS52-220ENST00000493674 GLI3P10071 1580 aa16.51■□□□□ 0.23
VPS52-220ENST00000493674 TATP17735 454 aaPredicted RBP16.51■□□□□ 0.23
VPS52-220ENST00000493674 AKAP4Q5JQC9 854 aa16.51■□□□□ 0.23
VPS52-220ENST00000493674 MYH16Q9H6N6 1097 aa16.51■□□□□ 0.23
VPS52-220ENST00000493674 STRN4Q9NRL3 753 aa16.51■□□□□ 0.23
VPS52-220ENST00000493674 TRPC5Q9UL62 973 aaPredicted RBP16.51■□□□□ 0.23
VPS52-220ENST00000493674 KDM6AO15550 1401 aaPredicted RBP16.51■□□□□ 0.23
VPS52-220ENST00000493674 EVA1CP58658 441 aa16.5■□□□□ 0.23
VPS52-220ENST00000493674 DCTN1Q14203 1278 aa16.5■□□□□ 0.23
VPS52-220ENST00000493674 ZNF530Q6P9A1 599 aaPredicted RBP16.5■□□□□ 0.23
VPS52-220ENST00000493674 ILDR2Q71H61 639 aa16.5■□□□□ 0.23
VPS52-220ENST00000493674 DOT1LQ8TEK3 1739 aa16.5■□□□□ 0.23
VPS52-220ENST00000493674 GNAI1P63096 354 aa16.49■□□□□ 0.23
VPS52-220ENST00000493674 MCM10Q7L590 875 aa16.49■□□□□ 0.23
VPS52-220ENST00000493674 UNC5CLQ8IV45 518 aa16.49■□□□□ 0.23
VPS52-220ENST00000493674 IL17REQ8NFR9 667 aa16.49■□□□□ 0.23
VPS52-220ENST00000493674 CFAP44Q96MT7 982 aa16.49■□□□□ 0.23
VPS52-220ENST00000493674 SPATA31A1Q5TZJ5 1347 aa16.48■□□□□ 0.23
VPS52-220ENST00000493674 TNS2Q63HR2 1409 aa16.48■□□□□ 0.23
VPS52-220ENST00000493674 IL2RBP14784 551 aa16.48■□□□□ 0.23
VPS52-220ENST00000493674 RBM6P78332 1123 aaKnown RBP16.48■□□□□ 0.23
VPS52-220ENST00000493674 SPG7Q9UQ90 795 aa16.48■□□□□ 0.23
VPS52-220ENST00000493674 LAMB4A4D0S4 1761 aa16.48■□□□□ 0.23
VPS52-220ENST00000493674 SPATA31A5Q5VU36 1347 aa16.47■□□□□ 0.23
VPS52-220ENST00000493674 SPATA31A7Q8IWB4 1347 aa16.47■□□□□ 0.23
VPS52-220ENST00000493674 C5P01031 1676 aa16.47■□□□□ 0.23
VPS52-220ENST00000493674 RXRBP28702 533 aa16.47■□□□□ 0.23
VPS52-220ENST00000493674 RTF1Q92541 710 aaKnown RBP16.47■□□□□ 0.23
VPS52-220ENST00000493674 BRWD3Q6RI45 1802 aa16.47■□□□□ 0.23
VPS52-220ENST00000493674 CHL1O00533 1208 aa16.46■□□□□ 0.23
VPS52-220ENST00000493674 CYP27B1O15528 508 aa16.46■□□□□ 0.23
VPS52-220ENST00000493674 PHKG2P15735 406 aa16.46■□□□□ 0.23
VPS52-220ENST00000493674 TSR2Q969E8 191 aaKnown RBP16.46■□□□□ 0.23
VPS52-220ENST00000493674 QTRT2Q9H974 415 aaKnown RBP16.46■□□□□ 0.23
VPS52-220ENST00000493674 RCAN3Q9UKA8 241 aa16.46■□□□□ 0.23
VPS52-220ENST00000493674 SBF2Q86WG5 1849 aa16.46■□□□□ 0.23
VPS52-220ENST00000493674 N4BP2Q86UW6 1770 aaPredicted RBP16.46■□□□□ 0.22
VPS52-220ENST00000493674 KAT6BQ8WYB5 2073 aa16.46■□□□□ 0.22
VPS52-220ENST00000493674 PCDH11XQ9BZA7 1347 aa16.45■□□□□ 0.22
VPS52-220ENST00000493674 PCDH11YQ9BZA8 1340 aa16.45■□□□□ 0.22
VPS52-220ENST00000493674 RGS12O14924 1447 aa16.45■□□□□ 0.22
VPS52-220ENST00000493674 CT47B1P0C2W7 299 aaPredicted RBP16.45■□□□□ 0.22
VPS52-220ENST00000493674 MBIPQ9NS73 344 aa16.45■□□□□ 0.22
VPS52-220ENST00000493674 BABAM1Q9NWV8 329 aa16.45■□□□□ 0.22
VPS52-220ENST00000493674 THRAP3Q9Y2W1 955 aaKnown RBP16.45■□□□□ 0.22
VPS52-220ENST00000493674 RNMTO43148 476 aaKnown RBP16.44■□□□□ 0.22
VPS52-220ENST00000493674 VPS72Q15906 364 aa16.44■□□□□ 0.22
VPS52-220ENST00000493674 C1orf141Q5JVX7 400 aa16.44■□□□□ 0.22
VPS52-220ENST00000493674 IFNL2Q8IZJ0 200 aa16.44■□□□□ 0.22
VPS52-220ENST00000493674 NKX1-1Q15270 411 aaPredicted RBP16.43■□□□□ 0.22
VPS52-220ENST00000493674 ZCRB1Q8TBF4 217 aaKnown RBP16.43■□□□□ 0.22
VPS52-220ENST00000493674 SUPT16HQ9Y5B9 1047 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms