RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 MTFR1LQ9H019 292 aa17.21■□□□□ 0.35
COL6A1-205ENST00000492851 NSD3Q9BZ95 1437 aa17.21■□□□□ 0.34
COL6A1-205ENST00000492851 ZBTB7AO95365 584 aa17.2■□□□□ 0.34
COL6A1-205ENST00000492851 SLC16A10Q8TF71 515 aa17.17■□□□□ 0.34
COL6A1-205ENST00000492851 POLR3GLQ9BT43 218 aa17.17■□□□□ 0.34
COL6A1-205ENST00000492851 PDGFDQ9GZP0 370 aaPredicted RBP17.17■□□□□ 0.34
COL6A1-205ENST00000492851 ATF5Q9Y2D1 282 aaPredicted RBP17.17■□□□□ 0.34
COL6A1-205ENST00000492851 WASHC2AQ641Q2 1341 aa17.17■□□□□ 0.34
COL6A1-205ENST00000492851 PCDH11XQ9BZA7 1347 aa17.17■□□□□ 0.34
COL6A1-205ENST00000492851 PCDH11YQ9BZA8 1340 aa17.17■□□□□ 0.34
COL6A1-205ENST00000492851 PPM1GO15355 546 aaPredicted RBP17.16■□□□□ 0.34
COL6A1-205ENST00000492851 PTGER2P43116 358 aa17.16■□□□□ 0.34
COL6A1-205ENST00000492851 USHBP1Q8N6Y0 703 aa17.16■□□□□ 0.34
COL6A1-205ENST00000492851 LRRC4BQ9NT99 713 aa17.16■□□□□ 0.34
COL6A1-205ENST00000492851 MEGF6O75095 1541 aa17.16■□□□□ 0.34
COL6A1-205ENST00000492851 EMILIN1Q9Y6C2 1016 aa17.15■□□□□ 0.34
COL6A1-205ENST00000492851 CASZ1Q86V15 1759 aa17.15■□□□□ 0.34
COL6A1-205ENST00000492851 KIF20BQ96Q89 1820 aa17.14■□□□□ 0.34
COL6A1-205ENST00000492851 AKT1S1Q96B36 256 aa17.14■□□□□ 0.33
COL6A1-205ENST00000492851 SPG7Q9UQ90 795 aa17.14■□□□□ 0.33
COL6A1-205ENST00000492851 BTAF1O14981 1849 aa17.14■□□□□ 0.33
COL6A1-205ENST00000492851 HSPA5P11021 654 aaKnown RBP17.13■□□□□ 0.33
COL6A1-205ENST00000492851 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.13■□□□□ 0.33
COL6A1-205ENST00000492851 TFCP2L1Q9NZI6 479 aa17.13■□□□□ 0.33
COL6A1-205ENST00000492851 NSD2O96028 1365 aa17.13■□□□□ 0.33
COL6A1-205ENST00000492851 ARXQ96QS3 562 aa17.12■□□□□ 0.33
COL6A1-205ENST00000492851 CCNL1Q9UK58 526 aaPredicted RBP17.12■□□□□ 0.33
COL6A1-205ENST00000492851 MYOM1P52179 1685 aa17.11■□□□□ 0.33
COL6A1-205ENST00000492851 ZNF827Q17R98 1081 aa17.11■□□□□ 0.33
COL6A1-205ENST00000492851 PANK3Q9H999 370 aa17.11■□□□□ 0.33
COL6A1-205ENST00000492851 POLKQ9UBT6 870 aa17.11■□□□□ 0.33
COL6A1-205ENST00000492851 POLD1P28340 1107 aa17.1■□□□□ 0.33
COL6A1-205ENST00000492851 SMARCC1Q92922 1105 aaPredicted RBP17.1■□□□□ 0.33
COL6A1-205ENST00000492851 SGIP1Q9BQI5 828 aa17.1■□□□□ 0.33
COL6A1-205ENST00000492851 SYT17Q9BSW7 474 aa17.1■□□□□ 0.33
COL6A1-205ENST00000492851 PAPPAQ13219 1627 aa17.1■□□□□ 0.33
COL6A1-205ENST00000492851 YY1P25490 414 aa17.09■□□□□ 0.33
COL6A1-205ENST00000492851 NKX1-1Q15270 411 aaPredicted RBP17.09■□□□□ 0.33
COL6A1-205ENST00000492851 MPRIPQ6WCQ1 1025 aa17.09■□□□□ 0.33
COL6A1-205ENST00000492851 PLEKHG2Q9H7P9 1386 aa17.08■□□□□ 0.32
COL6A1-205ENST00000492851 CYP27B1O15528 508 aa17.08■□□□□ 0.32
COL6A1-205ENST00000492851 EYA1Q99502 592 aa17.08■□□□□ 0.32
COL6A1-205ENST00000492851 FHDC1Q9C0D6 1143 aaPredicted RBP17.08■□□□□ 0.32
COL6A1-205ENST00000492851 RGPD2P0DJD1 1756 aa17.07■□□□□ 0.32
COL6A1-205ENST00000492851 NCAPD2Q15021 1401 aa17.07■□□□□ 0.32
COL6A1-205ENST00000492851 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
COL6A1-205ENST00000492851 KAT6BQ8WYB5 2073 aa17.06■□□□□ 0.32
COL6A1-205ENST00000492851 PNPLA7Q6ZV29 1317 aa17.06■□□□□ 0.32
COL6A1-205ENST00000492851 TNNT2P45379 298 aaPredicted RBP17.06■□□□□ 0.32
COL6A1-205ENST00000492851 IFNL2Q8IZJ0 200 aa17.06■□□□□ 0.32
COL6A1-205ENST00000492851 KNSTRNQ9Y448 316 aa17.06■□□□□ 0.32
COL6A1-205ENST00000492851 MAP3K5Q99683 1374 aa17.05■□□□□ 0.32
COL6A1-205ENST00000492851 DOT1LQ8TEK3 1739 aa17.05■□□□□ 0.32
COL6A1-205ENST00000492851 KCNQ4P56696 695 aa17.05■□□□□ 0.32
COL6A1-205ENST00000492851 MORC1Q86VD1 984 aa17.05■□□□□ 0.32
COL6A1-205ENST00000492851 SHANK3Q9BYB0 1731 aa17.04■□□□□ 0.32
COL6A1-205ENST00000492851 EIF4A2Q14240 407 aaKnown RBP17.04■□□□□ 0.32
COL6A1-205ENST00000492851 PALLDQ8WX93 1383 aa17.03■□□□□ 0.32
COL6A1-205ENST00000492851 MSH5O43196 834 aa17.03■□□□□ 0.32
COL6A1-205ENST00000492851 LY75O60449 1722 aa17.02■□□□□ 0.32
COL6A1-205ENST00000492851 ANKRD26Q9UPS8 1709 aa17.02■□□□□ 0.32
COL6A1-205ENST00000492851 HSP90AB1P08238 724 aaKnown RBP17.02■□□□□ 0.32
COL6A1-205ENST00000492851 TMOD3Q9NYL9 352 aa17.02■□□□□ 0.32
COL6A1-205ENST00000492851 PHKG2P15735 406 aa17.01■□□□□ 0.31
COL6A1-205ENST00000492851 AMOTQ4VCS5 1084 aa17.01■□□□□ 0.31
COL6A1-205ENST00000492851 PLEKHO1Q53GL0 409 aaPredicted RBP17.01■□□□□ 0.31
COL6A1-205ENST00000492851 PIGBQ92521 554 aa17.01■□□□□ 0.31
COL6A1-205ENST00000492851 QSER1Q2KHR3 1735 aa17.01■□□□□ 0.31
COL6A1-205ENST00000492851 COL23A1Q86Y22 540 aaPredicted RBP17■□□□□ 0.31
COL6A1-205ENST00000492851 MAP2P11137 1827 aaKnown RBP17■□□□□ 0.31
COL6A1-205ENST00000492851 IGSF1Q8N6C5 1336 aa16.99■□□□□ 0.31
COL6A1-205ENST00000492851 PKD1L3Q7Z443 1732 aa16.99■□□□□ 0.31
COL6A1-205ENST00000492851 ERVV-2B6SEH9 535 aa16.98■□□□□ 0.31
COL6A1-205ENST00000492851 DCAF5Q96JK2 942 aa16.98■□□□□ 0.31
COL6A1-205ENST00000492851 AK7Q96M32 723 aa16.98■□□□□ 0.31
COL6A1-205ENST00000492851 LOC102724428A0A0B4J2F2 783 aa16.97■□□□□ 0.31
COL6A1-205ENST00000492851 SIK1P57059 783 aa16.97■□□□□ 0.31
COL6A1-205ENST00000492851 GPR162Q16538 588 aa16.97■□□□□ 0.31
COL6A1-205ENST00000492851 KLHL34Q8N239 644 aa16.96■□□□□ 0.31
COL6A1-205ENST00000492851 SSFA2P28290 1259 aa16.94■□□□□ 0.3
COL6A1-205ENST00000492851 ATP6V1AP38606 617 aa16.94■□□□□ 0.3
COL6A1-205ENST00000492851 AMER1Q5JTC6 1135 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-205ENST00000492851 KIF7Q2M1P5 1343 aa16.94■□□□□ 0.3
COL6A1-205ENST00000492851 C1orf141Q5JVX7 400 aa16.93■□□□□ 0.3
COL6A1-205ENST00000492851 ATG3Q9NT62 314 aa16.93■□□□□ 0.3
COL6A1-205ENST00000492851 ASAP1Q9ULH1 1129 aa16.93■□□□□ 0.3
COL6A1-205ENST00000492851 MTHFSP49914 203 aa16.92■□□□□ 0.3
COL6A1-205ENST00000492851 SULT6B1Q6IMI4 303 aa16.92■□□□□ 0.3
COL6A1-205ENST00000492851 ZNF530Q6P9A1 599 aaPredicted RBP16.92■□□□□ 0.3
COL6A1-205ENST00000492851 CD2APQ9Y5K6 639 aa16.92■□□□□ 0.3
COL6A1-205ENST00000492851 COL24A1Q17RW2 1714 aa16.92■□□□□ 0.3
COL6A1-205ENST00000492851 C5P01031 1676 aa16.91■□□□□ 0.3
COL6A1-205ENST00000492851 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.91■□□□□ 0.3
COL6A1-205ENST00000492851 GRIN3BO60391 1043 aa16.91■□□□□ 0.3
COL6A1-205ENST00000492851 IL13P35225 146 aa16.91■□□□□ 0.3
COL6A1-205ENST00000492851 CABP4P57796 275 aa16.91■□□□□ 0.3
COL6A1-205ENST00000492851 PER1O15534 1290 aaPredicted RBP16.9■□□□□ 0.3
COL6A1-205ENST00000492851 TOGARAM1Q9Y4F4 1720 aa16.9■□□□□ 0.3
COL6A1-205ENST00000492851 ITGB4P16144 1822 aa16.89■□□□□ 0.29
COL6A1-205ENST00000492851 MSL1Q68DK7 614 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms