RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 PAPPAQ13219 1627 aa12.73□□□□□ -0.37
HDAC3-212ENST00000492407 SMG6Q86US8 1419 aaKnown RBP12.73□□□□□ -0.37
HDAC3-212ENST00000492407 INSRP06213 1382 aa12.73□□□□□ -0.37
HDAC3-212ENST00000492407 CLSPNQ9HAW4 1339 aa12.73□□□□□ -0.37
HDAC3-212ENST00000492407 FHDC1Q9C0D6 1143 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-212ENST00000492407 PRIM1P49642 420 aaKnown RBP12.72□□□□□ -0.37
HDAC3-212ENST00000492407 ZNF827Q17R98 1081 aa12.72□□□□□ -0.37
HDAC3-212ENST00000492407 NBPF6Q5VWK0 638 aa12.72□□□□□ -0.37
HDAC3-212ENST00000492407 RAPGEF4Q8WZA2 1011 aa12.72□□□□□ -0.37
HDAC3-212ENST00000492407 NBPF4Q96M43 638 aa12.72□□□□□ -0.37
HDAC3-212ENST00000492407 TATP17735 454 aaPredicted RBP12.71□□□□□ -0.37
HDAC3-212ENST00000492407 GGNBP2Q9H3C7 697 aa12.71□□□□□ -0.37
HDAC3-212ENST00000492407 NSD2O96028 1365 aa12.7□□□□□ -0.38
HDAC3-212ENST00000492407 FLT4P35916 1363 aa12.7□□□□□ -0.38
HDAC3-212ENST00000492407 BTAF1O14981 1849 aa12.7□□□□□ -0.38
HDAC3-212ENST00000492407 POLD1P28340 1107 aa12.7□□□□□ -0.38
HDAC3-212ENST00000492407 RRS1Q15050 365 aaKnown RBP12.7□□□□□ -0.38
HDAC3-212ENST00000492407 MEGF6O75095 1541 aa12.69□□□□□ -0.38
HDAC3-212ENST00000492407 FBLN1P23142 703 aa12.69□□□□□ -0.38
HDAC3-212ENST00000492407 SYTL4Q96C24 671 aaPredicted RBP12.69□□□□□ -0.38
HDAC3-212ENST00000492407 TFCP2L1Q9NZI6 479 aa12.69□□□□□ -0.38
HDAC3-212ENST00000492407 PCDH11XQ9BZA7 1347 aa12.68□□□□□ -0.38
HDAC3-212ENST00000492407 PCDH11YQ9BZA8 1340 aa12.68□□□□□ -0.38
HDAC3-212ENST00000492407 MYOM1P52179 1685 aa12.68□□□□□ -0.38
HDAC3-212ENST00000492407 HSP90AB2PQ58FF8 381 aa12.68□□□□□ -0.38
HDAC3-212ENST00000492407 PNPLA7Q6ZV29 1317 aa12.67□□□□□ -0.38
HDAC3-212ENST00000492407 FLAD1Q8NFF5 587 aa12.67□□□□□ -0.38
HDAC3-212ENST00000492407 CARD14Q9BXL6 1004 aa12.67□□□□□ -0.38
HDAC3-212ENST00000492407 CCNL1Q9UK58 526 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-212ENST00000492407 PLEKHG2Q9H7P9 1386 aa12.67□□□□□ -0.38
HDAC3-212ENST00000492407 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.66□□□□□ -0.38
HDAC3-212ENST00000492407 QSER1Q2KHR3 1735 aa12.65□□□□□ -0.38
HDAC3-212ENST00000492407 WASHC2AQ641Q2 1341 aa12.65□□□□□ -0.38
HDAC3-212ENST00000492407 NKX1-1Q15270 411 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-212ENST00000492407 SMARCC1Q92922 1105 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-212ENST00000492407 NCAPD2Q15021 1401 aa12.64□□□□□ -0.39
HDAC3-212ENST00000492407 USHBP1Q8N6Y0 703 aa12.64□□□□□ -0.39
HDAC3-212ENST00000492407 SPG7Q9UQ90 795 aa12.64□□□□□ -0.39
HDAC3-212ENST00000492407 NSD3Q9BZ95 1437 aa12.63□□□□□ -0.39
HDAC3-212ENST00000492407 LY75O60449 1722 aa12.63□□□□□ -0.39
HDAC3-212ENST00000492407 COL24A1Q17RW2 1714 aa12.63□□□□□ -0.39
HDAC3-212ENST00000492407 CYP27B1O15528 508 aa12.62□□□□□ -0.39
HDAC3-212ENST00000492407 GPR162Q16538 588 aa12.62□□□□□ -0.39
HDAC3-212ENST00000492407 ZNF784Q8NCA9 323 aaPredicted RBP12.62□□□□□ -0.39
HDAC3-212ENST00000492407 EMILIN1Q9Y6C2 1016 aa12.62□□□□□ -0.39
HDAC3-212ENST00000492407 SHANK3Q9BYB0 1731 aa12.62□□□□□ -0.39
HDAC3-212ENST00000492407 PALLDQ8WX93 1383 aa12.61□□□□□ -0.39
HDAC3-212ENST00000492407 KCNQ4P56696 695 aa12.61□□□□□ -0.39
HDAC3-212ENST00000492407 COL23A1Q86Y22 540 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-212ENST00000492407 DOT1LQ8TEK3 1739 aa12.61□□□□□ -0.39
HDAC3-212ENST00000492407 GRIN3BO60391 1043 aa12.6□□□□□ -0.39
HDAC3-212ENST00000492407 MPRIPQ6WCQ1 1025 aa12.6□□□□□ -0.39
HDAC3-212ENST00000492407 POLKQ9UBT6 870 aa12.6□□□□□ -0.39
HDAC3-212ENST00000492407 KIF20BQ96Q89 1820 aa12.6□□□□□ -0.39
HDAC3-212ENST00000492407 EYA1Q99502 592 aa12.59□□□□□ -0.39
HDAC3-212ENST00000492407 CD2APQ9Y5K6 639 aa12.59□□□□□ -0.39
HDAC3-212ENST00000492407 RGPD2P0DJD1 1756 aa12.58□□□□□ -0.39
HDAC3-212ENST00000492407 PPM1GO15355 546 aaPredicted RBP12.58□□□□□ -0.4
HDAC3-212ENST00000492407 MSH5O43196 834 aa12.58□□□□□ -0.4
HDAC3-212ENST00000492407 EIF4G2P78344 907 aaKnown RBP eCLIP12.58□□□□□ -0.4
HDAC3-212ENST00000492407 IFNL2Q8IZJ0 200 aa12.58□□□□□ -0.4
HDAC3-212ENST00000492407 PIGBQ92521 554 aa12.58□□□□□ -0.4
HDAC3-212ENST00000492407 KAT6BQ8WYB5 2073 aa12.58□□□□□ -0.4
HDAC3-212ENST00000492407 UTRNP46939 3433 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 PHKG2P15735 406 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 SSFA2P28290 1259 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 AK7Q96M32 723 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 TMOD3Q9NYL9 352 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 PKD1L3Q7Z443 1732 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 ANKRD26Q9UPS8 1709 aa12.56□□□□□ -0.4
HDAC3-212ENST00000492407 LOC102724428A0A0B4J2F2 783 aa12.55□□□□□ -0.4
HDAC3-212ENST00000492407 HSP90AB1P08238 724 aaKnown RBP12.55□□□□□ -0.4
HDAC3-212ENST00000492407 SIK1P57059 783 aa12.55□□□□□ -0.4
HDAC3-212ENST00000492407 KLHL34Q8N239 644 aa12.55□□□□□ -0.4
HDAC3-212ENST00000492407 ERVV-2B6SEH9 535 aa12.54□□□□□ -0.4
HDAC3-212ENST00000492407 EIF4A2Q14240 407 aaKnown RBP12.54□□□□□ -0.4
HDAC3-212ENST00000492407 AMOTQ4VCS5 1084 aa12.54□□□□□ -0.4
HDAC3-212ENST00000492407 NLGN2Q8NFZ4 835 aa12.54□□□□□ -0.4
HDAC3-212ENST00000492407 IGSF1Q8N6C5 1336 aa12.54□□□□□ -0.4
HDAC3-212ENST00000492407 DCAF5Q96JK2 942 aa12.53□□□□□ -0.4
HDAC3-212ENST00000492407 PCGF6Q9BYE7 350 aa12.53□□□□□ -0.4
HDAC3-212ENST00000492407 CHD4Q14839 1912 aa12.52□□□□□ -0.4
HDAC3-212ENST00000492407 C5P01031 1676 aa12.52□□□□□ -0.4
HDAC3-212ENST00000492407 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.52□□□□□ -0.41
HDAC3-212ENST00000492407 C1QTNF8P60827 252 aa12.52□□□□□ -0.41
HDAC3-212ENST00000492407 PLEKHO1Q53GL0 409 aaPredicted RBP12.52□□□□□ -0.41
HDAC3-212ENST00000492407 PANK3Q9H999 370 aa12.52□□□□□ -0.41
HDAC3-212ENST00000492407 TUBGCP6Q96RT7 1819 aa12.52□□□□□ -0.41
HDAC3-212ENST00000492407 HSPA5P11021 654 aaKnown RBP12.51□□□□□ -0.41
HDAC3-212ENST00000492407 ATP6V1AP38606 617 aa12.51□□□□□ -0.41
HDAC3-212ENST00000492407 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
HDAC3-212ENST00000492407 MSL1Q68DK7 614 aa12.51□□□□□ -0.41
HDAC3-212ENST00000492407 ATG3Q9NT62 314 aa12.51□□□□□ -0.41
HDAC3-212ENST00000492407 ASAP1Q9ULH1 1129 aa12.51□□□□□ -0.41
HDAC3-212ENST00000492407 C4BP0C0L5 1744 aa12.51□□□□□ -0.41
HDAC3-212ENST00000492407 YBX3P16989 372 aaKnown RBP eCLIP12.5□□□□□ -0.411e-7■□□□□ 10.3
HDAC3-212ENST00000492407 ADRA2BP18089 450 aa12.5□□□□□ -0.41
HDAC3-212ENST00000492407 RC3H1Q5TC82 1133 aaKnown RBP12.5□□□□□ -0.41
HDAC3-212ENST00000492407 LINC00116Q8NCU8 138 aa12.5□□□□□ -0.41
HDAC3-212ENST00000492407 TOGARAM1Q9Y4F4 1720 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms