RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 ANP32EQ9BTT0 268 aa12.66□□□□□ -0.38
BRCA1-219ENST00000491747 DEFB132Q7Z7B7 95 aa12.66□□□□□ -0.38
BRCA1-219ENST00000491747 EYA1Q99502 592 aa12.66□□□□□ -0.38
BRCA1-219ENST00000491747 NCAPD2Q15021 1401 aa12.66□□□□□ -0.38
BRCA1-219ENST00000491747 TRIM37O94972 964 aa12.65□□□□□ -0.38
BRCA1-219ENST00000491747 OVOS2A0A0G2JMS6 1433 aa12.65□□□□□ -0.38
BRCA1-219ENST00000491747 MTHFSP49914 203 aa12.64□□□□□ -0.39
BRCA1-219ENST00000491747 PTF1AQ7RTS3 328 aa12.64□□□□□ -0.39
BRCA1-219ENST00000491747 PKD1L3Q7Z443 1732 aa12.63□□□□□ -0.39
BRCA1-219ENST00000491747 BCL9O00512 1426 aa12.62□□□□□ -0.39
BRCA1-219ENST00000491747 SF3B2Q13435 895 aaKnown RBP12.62□□□□□ -0.39
BRCA1-219ENST00000491747 DDX54Q8TDD1 881 aaKnown RBP12.62□□□□□ -0.39
BRCA1-219ENST00000491747 NHSQ6T4R5 1651 aa12.61□□□□□ -0.39
BRCA1-219ENST00000491747 IL13P35225 146 aa12.61□□□□□ -0.39
BRCA1-219ENST00000491747 ZCRB1Q8TBF4 217 aaKnown RBP12.61□□□□□ -0.39
BRCA1-219ENST00000491747 RAPGEF4Q8WZA2 1011 aa12.61□□□□□ -0.39
BRCA1-219ENST00000491747 IGSF1Q8N6C5 1336 aa12.61□□□□□ -0.39
BRCA1-219ENST00000491747 TATP17735 454 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-219ENST00000491747 EN1Q05925 392 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-219ENST00000491747 COL3A1P02461 1466 aaPredicted RBP12.6□□□□□ -0.39
BRCA1-219ENST00000491747 DOT1LQ8TEK3 1739 aa12.6□□□□□ -0.39
BRCA1-219ENST00000491747 KCNQ2O43526 872 aa12.6□□□□□ -0.39
BRCA1-219ENST00000491747 APBA3O96018 575 aa12.59□□□□□ -0.39
BRCA1-219ENST00000491747 KAT6BQ8WYB5 2073 aa12.59□□□□□ -0.39
BRCA1-219ENST00000491747 ACSBG1Q96GR2 724 aa12.59□□□□□ -0.39
BRCA1-219ENST00000491747 BAG6P46379 1132 aa12.59□□□□□ -0.39
BRCA1-219ENST00000491747 AEBP1Q8IUX7 1158 aa12.59□□□□□ -0.39
BRCA1-219ENST00000491747 PPP2R1AP30153 589 aa12.58□□□□□ -0.4
BRCA1-219ENST00000491747 EZH2Q15910 746 aaKnown RBP12.58□□□□□ -0.4
BRCA1-219ENST00000491747 BTAF1O14981 1849 aa12.58□□□□□ -0.4
BRCA1-219ENST00000491747 RREB1Q92766 1687 aa12.58□□□□□ -0.4
BRCA1-219ENST00000491747 CAMKK2Q96RR4 588 aa12.58□□□□□ -0.4
BRCA1-219ENST00000491747 TOGARAM1Q9Y4F4 1720 aa12.57□□□□□ -0.4
BRCA1-219ENST00000491747 CYP27B1O15528 508 aa12.57□□□□□ -0.4
BRCA1-219ENST00000491747 BCL11BQ9C0K0 894 aaPredicted RBP12.57□□□□□ -0.4
BRCA1-219ENST00000491747 NUP188Q5SRE5 1749 aa12.57□□□□□ -0.4
BRCA1-219ENST00000491747 PARD3Q8TEW0 1356 aa12.56□□□□□ -0.4
BRCA1-219ENST00000491747 RGPD3A6NKT7 1758 aaPredicted RBP12.56□□□□□ -0.4
BRCA1-219ENST00000491747 RGPD4Q7Z3J3 1758 aa12.56□□□□□ -0.4
BRCA1-219ENST00000491747 ITGB4P16144 1822 aa12.56□□□□□ -0.4
BRCA1-219ENST00000491747 DIAPH1O60610 1272 aaKnown RBP12.56□□□□□ -0.4
BRCA1-219ENST00000491747 SULT6B1Q6IMI4 303 aa12.56□□□□□ -0.4
BRCA1-219ENST00000491747 KDRP35968 1356 aa12.55□□□□□ -0.4
BRCA1-219ENST00000491747 PCDH11XQ9BZA7 1347 aa12.55□□□□□ -0.4
BRCA1-219ENST00000491747 PCDH11YQ9BZA8 1340 aa12.55□□□□□ -0.4
BRCA1-219ENST00000491747 HMOX1P09601 288 aa12.54□□□□□ -0.4
BRCA1-219ENST00000491747 PRIM1P49642 420 aaKnown RBP12.54□□□□□ -0.4
BRCA1-219ENST00000491747 PROM2Q8N271 834 aa12.54□□□□□ -0.4
BRCA1-219ENST00000491747 SPG7Q9UQ90 795 aa12.54□□□□□ -0.4
BRCA1-219ENST00000491747 PLSCR1O15162 318 aa12.53□□□□□ -0.4
BRCA1-219ENST00000491747 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.53□□□□□ -0.44e-6■■■■■ 27.4
BRCA1-219ENST00000491747 RBM19Q9Y4C8 960 aaKnown RBP12.52□□□□□ -0.4
BRCA1-219ENST00000491747 VIRMAQ69YN4 1812 aaKnown RBP12.52□□□□□ -0.41
BRCA1-219ENST00000491747 PHKG2P15735 406 aa12.52□□□□□ -0.41
BRCA1-219ENST00000491747 NKX1-1Q15270 411 aaPredicted RBP12.52□□□□□ -0.41
BRCA1-219ENST00000491747 SYTL4Q96C24 671 aaPredicted RBP12.51□□□□□ -0.41
BRCA1-219ENST00000491747 U2SURPO15042 1029 aaKnown RBP12.51□□□□□ -0.41
BRCA1-219ENST00000491747 LY75O60449 1722 aa12.51□□□□□ -0.41
BRCA1-219ENST00000491747 PLEKHG2Q9H7P9 1386 aa12.5□□□□□ -0.41
BRCA1-219ENST00000491747 PLEKHO1Q53GL0 409 aaPredicted RBP12.5□□□□□ -0.41
BRCA1-219ENST00000491747 IFNL2Q8IZJ0 200 aa12.5□□□□□ -0.41
BRCA1-219ENST00000491747 CFAP53Q96M91 514 aa12.5□□□□□ -0.41
BRCA1-219ENST00000491747 RALBP1Q15311 655 aa12.49□□□□□ -0.41
BRCA1-219ENST00000491747 TXNRD1Q16881 649 aa12.49□□□□□ -0.41
BRCA1-219ENST00000491747 ZNF530Q6P9A1 599 aaPredicted RBP12.49□□□□□ -0.41
BRCA1-219ENST00000491747 SCN11AQ9UI33 1791 aa12.49□□□□□ -0.41
BRCA1-219ENST00000491747 AMOTQ4VCS5 1084 aa12.48□□□□□ -0.41
BRCA1-219ENST00000491747 KDM6AO15550 1401 aaPredicted RBP12.48□□□□□ -0.41
BRCA1-219ENST00000491747 PSDA5PKW4 1024 aaPredicted RBP12.48□□□□□ -0.41
BRCA1-219ENST00000491747 MPRIPQ6WCQ1 1025 aa12.48□□□□□ -0.41
BRCA1-219ENST00000491747 MTHFSDQ2M296 383 aaKnown RBP12.47□□□□□ -0.41
BRCA1-219ENST00000491747 PAPPAQ13219 1627 aa12.47□□□□□ -0.41
BRCA1-219ENST00000491747 PIGBQ92521 554 aa12.47□□□□□ -0.41
BRCA1-219ENST00000491747 RSPH6AQ9H0K4 717 aa12.47□□□□□ -0.41
BRCA1-219ENST00000491747 LRRC4BQ9NT99 713 aa12.47□□□□□ -0.41
BRCA1-219ENST00000491747 KCNQ4P56696 695 aa12.46□□□□□ -0.41
BRCA1-219ENST00000491747 R3HDM1Q15032 1099 aaKnown RBP12.46□□□□□ -0.41
BRCA1-219ENST00000491747 PRKRIP1Q9H875 184 aaPredicted RBP12.46□□□□□ -0.41
BRCA1-219ENST00000491747 ANO8Q9HCE9 1232 aaPredicted RBP12.46□□□□□ -0.41
BRCA1-219ENST00000491747 PHACTR3Q96KR7 559 aa12.45□□□□□ -0.42
BRCA1-219ENST00000491747 ADAMTS7Q9UKP4 1686 aa12.45□□□□□ -0.42
BRCA1-219ENST00000491747 MYBBP1AQ9BQG0 1328 aaKnown RBP12.45□□□□□ -0.42
BRCA1-219ENST00000491747 U2AF1L5P0DN76 240 aaPredicted RBP12.45□□□□□ -0.42
BRCA1-219ENST00000491747 HNRNPUQ00839 825 aaKnown RBP eCLIP12.45□□□□□ -0.42
BRCA1-219ENST00000491747 U2AF1Q01081 240 aaKnown RBP eCLIP12.45□□□□□ -0.42
BRCA1-219ENST00000491747 NUDCQ9Y266 331 aa12.45□□□□□ -0.42
BRCA1-219ENST00000491747 TAF1LQ8IZX4 1826 aa12.44□□□□□ -0.42
BRCA1-219ENST00000491747 PRKAR2BP31323 418 aa12.44□□□□□ -0.42
BRCA1-219ENST00000491747 C1orf141Q5JVX7 400 aa12.44□□□□□ -0.42
BRCA1-219ENST00000491747 DCAF5Q96JK2 942 aa12.44□□□□□ -0.42
BRCA1-219ENST00000491747 AKAP4Q5JQC9 854 aa12.44□□□□□ -0.42
BRCA1-219ENST00000491747 LGR6Q9HBX8 967 aa12.44□□□□□ -0.42
BRCA1-219ENST00000491747 TUBGCP6Q96RT7 1819 aa12.43□□□□□ -0.42
BRCA1-219ENST00000491747 HSP90AB1P08238 724 aaKnown RBP12.43□□□□□ -0.42
BRCA1-219ENST00000491747 TMOD3Q9NYL9 352 aa12.43□□□□□ -0.42
BRCA1-219ENST00000491747 ASAP1Q9ULH1 1129 aa12.43□□□□□ -0.42
BRCA1-219ENST00000491747 DLG5Q8TDM6 1919 aa12.42□□□□□ -0.42
BRCA1-219ENST00000491747 C5P01031 1676 aa12.42□□□□□ -0.42
BRCA1-219ENST00000491747 ERVV-2B6SEH9 535 aa12.42□□□□□ -0.42
BRCA1-219ENST00000491747 NBPF14Q5TI25 921 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms