RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 ATF5Q9Y2D1 282 aaPredicted RBP12.48□□□□□ -0.41
HDAC3-211ENST00000491581 TOGARAM1Q9Y4F4 1720 aa12.48□□□□□ -0.41
HDAC3-211ENST00000491581 NINLQ9Y2I6 1382 aa12.47□□□□□ -0.41
HDAC3-211ENST00000491581 MAP2P11137 1827 aaKnown RBP12.47□□□□□ -0.41
HDAC3-211ENST00000491581 ZNF827Q17R98 1081 aa12.47□□□□□ -0.41
HDAC3-211ENST00000491581 EMILIN1Q9Y6C2 1016 aa12.47□□□□□ -0.41
HDAC3-211ENST00000491581 NSD2O96028 1365 aa12.45□□□□□ -0.42
HDAC3-211ENST00000491581 SYTL4Q96C24 671 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-211ENST00000491581 LY75O60449 1722 aa12.45□□□□□ -0.42
HDAC3-211ENST00000491581 ANKRD26Q9UPS8 1709 aa12.45□□□□□ -0.42
HDAC3-211ENST00000491581 C11orf95C9JLR9 678 aaPredicted RBP12.44□□□□□ -0.42
HDAC3-211ENST00000491581 HOXD11P31277 338 aaPredicted RBP12.44□□□□□ -0.42
HDAC3-211ENST00000491581 PRIM1P49642 420 aaKnown RBP12.44□□□□□ -0.42
HDAC3-211ENST00000491581 ITGB4P16144 1822 aa12.44□□□□□ -0.42
HDAC3-211ENST00000491581 PPM1GO15355 546 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-211ENST00000491581 HSPA5P11021 654 aaKnown RBP12.43□□□□□ -0.42
HDAC3-211ENST00000491581 PTGER2P43116 358 aa12.43□□□□□ -0.42
HDAC3-211ENST00000491581 TNNT2P45379 298 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-211ENST00000491581 SLC15A2Q16348 729 aa12.43□□□□□ -0.42
HDAC3-211ENST00000491581 SPON1Q9HCB6 807 aa12.43□□□□□ -0.42
HDAC3-211ENST00000491581 CCER1Q8TC90 406 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-211ENST00000491581 STK32BQ9NY57 414 aa12.42□□□□□ -0.42
HDAC3-211ENST00000491581 PPP1R1BQ9UD71 204 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-211ENST00000491581 SMIM5Q71RC9 77 aa12.41□□□□□ -0.42
HDAC3-211ENST00000491581 PKD1L3Q7Z443 1732 aa12.41□□□□□ -0.42
HDAC3-211ENST00000491581 ZCRB1Q8TBF4 217 aaKnown RBP12.41□□□□□ -0.42
HDAC3-211ENST00000491581 RTL1A6NKG5 1358 aa12.41□□□□□ -0.42
HDAC3-211ENST00000491581 INSRP06213 1382 aa12.4□□□□□ -0.42
HDAC3-211ENST00000491581 FLT4P35916 1363 aa12.39□□□□□ -0.43
HDAC3-211ENST00000491581 TAF1LQ8IZX4 1826 aa12.39□□□□□ -0.43
HDAC3-211ENST00000491581 C5P01031 1676 aa12.38□□□□□ -0.43
HDAC3-211ENST00000491581 QSER1Q2KHR3 1735 aa12.38□□□□□ -0.43
HDAC3-211ENST00000491581 CYP27B1O15528 508 aa12.38□□□□□ -0.43
HDAC3-211ENST00000491581 AKT1S1Q96B36 256 aa12.38□□□□□ -0.43
HDAC3-211ENST00000491581 SGIP1Q9BQI5 828 aa12.38□□□□□ -0.43
HDAC3-211ENST00000491581 FHDC1Q9C0D6 1143 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-211ENST00000491581 SMG6Q86US8 1419 aaKnown RBP12.37□□□□□ -0.43
HDAC3-211ENST00000491581 PNPLA7Q6ZV29 1317 aa12.37□□□□□ -0.43
HDAC3-211ENST00000491581 C1QBPQ07021 282 aaKnown RBP12.36□□□□□ -0.43
HDAC3-211ENST00000491581 AMIGO3Q86WK7 504 aa12.36□□□□□ -0.43
HDAC3-211ENST00000491581 RAPGEF4Q8WZA2 1011 aa12.36□□□□□ -0.43
HDAC3-211ENST00000491581 PANK3Q9H999 370 aa12.36□□□□□ -0.43
HDAC3-211ENST00000491581 POLKQ9UBT6 870 aa12.36□□□□□ -0.43
HDAC3-211ENST00000491581 COL24A1Q17RW2 1714 aa12.35□□□□□ -0.43
HDAC3-211ENST00000491581 TATP17735 454 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-211ENST00000491581 CDCA8Q53HL2 280 aa12.35□□□□□ -0.43
HDAC3-211ENST00000491581 EYA1Q99502 592 aa12.35□□□□□ -0.43
HDAC3-211ENST00000491581 EIF4G2P78344 907 aaKnown RBP eCLIP12.34□□□□□ -0.43
HDAC3-211ENST00000491581 MPRIPQ6WCQ1 1025 aa12.34□□□□□ -0.43
HDAC3-211ENST00000491581 KLHL34Q8N239 644 aa12.34□□□□□ -0.43
HDAC3-211ENST00000491581 TIMELESSQ9UNS1 1208 aa12.34□□□□□ -0.43
HDAC3-211ENST00000491581 NCAPD2Q15021 1401 aa12.34□□□□□ -0.43
HDAC3-211ENST00000491581 CLSPNQ9HAW4 1339 aa12.34□□□□□ -0.43
HDAC3-211ENST00000491581 SLC24A1O60721 1099 aa12.33□□□□□ -0.44
HDAC3-211ENST00000491581 CNGB1Q14028 1251 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-211ENST00000491581 EIF4A2Q14240 407 aaKnown RBP12.33□□□□□ -0.44
HDAC3-211ENST00000491581 MSL1Q68DK7 614 aa12.33□□□□□ -0.44
HDAC3-211ENST00000491581 SYT17Q9BSW7 474 aa12.33□□□□□ -0.44
HDAC3-211ENST00000491581 MTFR1LQ9H019 292 aa12.33□□□□□ -0.44
HDAC3-211ENST00000491581 CCNL1Q9UK58 526 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-211ENST00000491581 CGNL1Q0VF96 1302 aa12.33□□□□□ -0.44
HDAC3-211ENST00000491581 WASHC2AQ641Q2 1341 aa12.32□□□□□ -0.44
HDAC3-211ENST00000491581 C4BP0C0L5 1744 aa12.31□□□□□ -0.44
HDAC3-211ENST00000491581 YY1P25490 414 aa12.31□□□□□ -0.44
HDAC3-211ENST00000491581 COL23A1Q86Y22 540 aaPredicted RBP12.31□□□□□ -0.44
HDAC3-211ENST00000491581 AEBP1Q8IUX7 1158 aa12.31□□□□□ -0.44
HDAC3-211ENST00000491581 TFCP2L1Q9NZI6 479 aa12.31□□□□□ -0.44
HDAC3-211ENST00000491581 PCDH11XQ9BZA7 1347 aa12.31□□□□□ -0.44
HDAC3-211ENST00000491581 PCDH11YQ9BZA8 1340 aa12.31□□□□□ -0.44
HDAC3-211ENST00000491581 PALLDQ8WX93 1383 aa12.3□□□□□ -0.44
HDAC3-211ENST00000491581 UBR3Q6ZT12 1888 aa12.3□□□□□ -0.44
HDAC3-211ENST00000491581 NLGN2Q8NFZ4 835 aa12.3□□□□□ -0.44
HDAC3-211ENST00000491581 PIGBQ92521 554 aa12.3□□□□□ -0.44
HDAC3-211ENST00000491581 ARXQ96QS3 562 aa12.3□□□□□ -0.44
HDAC3-211ENST00000491581 SLC27A3Q5K4L6 730 aa12.29□□□□□ -0.44
HDAC3-211ENST00000491581 KIF7Q2M1P5 1343 aa12.29□□□□□ -0.44
HDAC3-211ENST00000491581 KIF24Q5T7B8 1368 aa12.29□□□□□ -0.44
HDAC3-211ENST00000491581 WWC3Q9ULE0 1092 aa12.28□□□□□ -0.44
HDAC3-211ENST00000491581 ASAP1Q9ULH1 1129 aa12.28□□□□□ -0.44
HDAC3-211ENST00000491581 VIRMAQ69YN4 1812 aaKnown RBP12.27□□□□□ -0.44
HDAC3-211ENST00000491581 PHF14O94880 888 aa12.27□□□□□ -0.45
HDAC3-211ENST00000491581 PHKG2P15735 406 aa12.27□□□□□ -0.45
HDAC3-211ENST00000491581 ITPK1Q13572 414 aa12.27□□□□□ -0.45
HDAC3-211ENST00000491581 PPP4R3CPQ6ZMV5 832 aa12.27□□□□□ -0.45
HDAC3-211ENST00000491581 UTRNP46939 3433 aa12.26□□□□□ -0.45
HDAC3-211ENST00000491581 PELP1Q8IZL8 1130 aaKnown RBP12.26□□□□□ -0.45
HDAC3-211ENST00000491581 LINC00116Q8NCU8 138 aa12.26□□□□□ -0.45
HDAC3-211ENST00000491581 KDM6AO15550 1401 aaPredicted RBP12.26□□□□□ -0.45
HDAC3-211ENST00000491581 MORC1Q86VD1 984 aa12.25□□□□□ -0.45
HDAC3-211ENST00000491581 SLC4A9Q96Q91 983 aa12.25□□□□□ -0.45
HDAC3-211ENST00000491581 IGSF1Q8N6C5 1336 aa12.25□□□□□ -0.45
HDAC3-211ENST00000491581 COL5A3P25940 1745 aaPredicted RBP12.24□□□□□ -0.45
HDAC3-211ENST00000491581 CHD4Q14839 1912 aa12.24□□□□□ -0.45
HDAC3-211ENST00000491581 NKX1-1Q15270 411 aaPredicted RBP12.24□□□□□ -0.45
HDAC3-211ENST00000491581 ATG3Q9NT62 314 aa12.24□□□□□ -0.45
HDAC3-211ENST00000491581 SPG7Q9UQ90 795 aa12.24□□□□□ -0.45
HDAC3-211ENST00000491581 AMER1Q5JTC6 1135 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-211ENST00000491581 CC2D1BQ5T0F9 858 aaKnown RBP12.23□□□□□ -0.45
HDAC3-211ENST00000491581 YBX3P16989 372 aaKnown RBP eCLIP12.22□□□□□ -0.453e-7■□□□□ 9.4
HDAC3-211ENST00000491581 IFNL2Q8IZJ0 200 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms