RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 STRN4Q9NRL3 753 aa13.38□□□□□ -0.27
HDAC3-210ENST00000490808 CCDC9Q9Y3X0 531 aaKnown RBP13.38□□□□□ -0.27
HDAC3-210ENST00000490808 ZNF521Q96K83 1311 aa13.38□□□□□ -0.27
HDAC3-210ENST00000490808 COL3A1P02461 1466 aaPredicted RBP13.37□□□□□ -0.27
HDAC3-210ENST00000490808 ZBTB7CA1YPR0 619 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 CSB-PGBD3P0DP91 1061 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 BAG6P46379 1132 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 TOM1L2Q6ZVM7 507 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 ANKRD24Q8TF21 1146 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 AXIN2Q9Y2T1 843 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 RNF123Q5XPI4 1314 aa13.37□□□□□ -0.27
HDAC3-210ENST00000490808 WNK3Q9BYP7 1800 aa13.36□□□□□ -0.27
HDAC3-210ENST00000490808 SLFN5Q08AF3 891 aa13.36□□□□□ -0.27
HDAC3-210ENST00000490808 RRS1Q15050 365 aaKnown RBP13.36□□□□□ -0.27
HDAC3-210ENST00000490808 KRT27Q7Z3Y8 459 aa13.36□□□□□ -0.27
HDAC3-210ENST00000490808 PPP4R2Q9NY27 417 aa13.36□□□□□ -0.27
HDAC3-210ENST00000490808 PARP4Q9UKK3 1724 aaKnown RBP13.36□□□□□ -0.27
HDAC3-210ENST00000490808 THSD7AQ9UPZ6 1657 aa13.35□□□□□ -0.27
HDAC3-210ENST00000490808 CALD1Q05682 793 aaKnown RBP13.35□□□□□ -0.27
HDAC3-210ENST00000490808 LARP1Q6PKG0 1096 aaKnown RBP13.35□□□□□ -0.27
HDAC3-210ENST00000490808 WWC1Q8IX03 1113 aa13.35□□□□□ -0.27
HDAC3-210ENST00000490808 MYH16Q9H6N6 1097 aa13.35□□□□□ -0.27
HDAC3-210ENST00000490808 PEAK1Q9H792 1746 aa13.35□□□□□ -0.27
HDAC3-210ENST00000490808 SENP3-EIF4A1A0A087X0R7 540 aa13.34□□□□□ -0.27
HDAC3-210ENST00000490808 A0A0G2JS52 829 aa13.34□□□□□ -0.27
HDAC3-210ENST00000490808 MYT1Q01538 1121 aa13.34□□□□□ -0.27
HDAC3-210ENST00000490808 LMOD3Q0VAK6 560 aa13.34□□□□□ -0.27
HDAC3-210ENST00000490808 CDCA7LQ96GN5 454 aa13.34□□□□□ -0.27
HDAC3-210ENST00000490808 DUSP27Q5VZP5 1158 aa13.33□□□□□ -0.28
HDAC3-210ENST00000490808 EMILIN1Q9Y6C2 1016 aa13.33□□□□□ -0.28
HDAC3-210ENST00000490808 RGPD1P0DJD0 1748 aa13.33□□□□□ -0.28
HDAC3-210ENST00000490808 NCAPD2Q15021 1401 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 YY1P25490 414 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 IL13P35225 146 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 EN1Q05925 392 aaPredicted RBP13.32□□□□□ -0.28
HDAC3-210ENST00000490808 R3HDM1Q15032 1099 aaKnown RBP13.32□□□□□ -0.28
HDAC3-210ENST00000490808 NEUROD2Q15784 382 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 HSP90AB2PQ58FF8 381 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 TRMT2AQ8IZ69 625 aaKnown RBP13.32□□□□□ -0.28
HDAC3-210ENST00000490808 PLEKHF1Q96S99 279 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 NLRP2Q9NX02 1062 aa13.32□□□□□ -0.28
HDAC3-210ENST00000490808 TMPOP42166 694 aaKnown RBP13.31□□□□□ -0.28
HDAC3-210ENST00000490808 RRP1P56182 461 aaKnown RBP13.31□□□□□ -0.28
HDAC3-210ENST00000490808 IL16Q14005 1332 aa13.31□□□□□ -0.28
HDAC3-210ENST00000490808 DISP2A7MBM2 1401 aa13.3□□□□□ -0.28
HDAC3-210ENST00000490808 CT47B1P0C2W7 299 aaPredicted RBP13.3□□□□□ -0.28
HDAC3-210ENST00000490808 IL2RBP14784 551 aa13.3□□□□□ -0.28
HDAC3-210ENST00000490808 FAM98CQ17RN3 349 aaKnown RBP13.3□□□□□ -0.28
HDAC3-210ENST00000490808 RGPD2P0DJD1 1756 aa13.3□□□□□ -0.28
HDAC3-210ENST00000490808 KAT6BQ8WYB5 2073 aa13.29□□□□□ -0.28
HDAC3-210ENST00000490808 FBLN1P23142 703 aa13.29□□□□□ -0.28
HDAC3-210ENST00000490808 PRKAR2BP31323 418 aa13.29□□□□□ -0.28
HDAC3-210ENST00000490808 RIPK4P57078 832 aa13.29□□□□□ -0.28
HDAC3-210ENST00000490808 RSPH6AQ9H0K4 717 aa13.29□□□□□ -0.28
HDAC3-210ENST00000490808 BCL9O00512 1426 aa13.29□□□□□ -0.28
HDAC3-210ENST00000490808 EXOC5O00471 708 aa13.28□□□□□ -0.28
HDAC3-210ENST00000490808 DDB1Q16531 1140 aa13.28□□□□□ -0.28
HDAC3-210ENST00000490808 RAPGEF4Q8WZA2 1011 aa13.28□□□□□ -0.28
HDAC3-210ENST00000490808 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDAC3-210ENST00000490808 USP35Q9P2H5 1018 aa13.28□□□□□ -0.28
HDAC3-210ENST00000490808 IGSF1Q8N6C5 1336 aa13.28□□□□□ -0.28
HDAC3-210ENST00000490808 TNS2Q63HR2 1409 aa13.28□□□□□ -0.28
HDAC3-210ENST00000490808 IRX6P78412 446 aaPredicted RBP13.27□□□□□ -0.29
HDAC3-210ENST00000490808 EIF4A2Q14240 407 aaKnown RBP13.27□□□□□ -0.29
HDAC3-210ENST00000490808 NFE2L2Q16236 605 aa13.27□□□□□ -0.29
HDAC3-210ENST00000490808 LTV1Q96GA3 475 aaPredicted RBP13.27□□□□□ -0.29
HDAC3-210ENST00000490808 RRP7AQ9Y3A4 280 aaKnown RBP13.27□□□□□ -0.29
HDAC3-210ENST00000490808 OVOS2A0A0G2JMS6 1433 aa13.27□□□□□ -0.29
HDAC3-210ENST00000490808 LRRC37A3O60309 1634 aa13.27□□□□□ -0.29
HDAC3-210ENST00000490808 TATP17735 454 aaPredicted RBP13.26□□□□□ -0.29
HDAC3-210ENST00000490808 KDRP35968 1356 aa13.26□□□□□ -0.29
HDAC3-210ENST00000490808 FAM182BQ5T319 152 aa13.26□□□□□ -0.29
HDAC3-210ENST00000490808 NBPF6Q5VWK0 638 aa13.26□□□□□ -0.29
HDAC3-210ENST00000490808 NBPF4Q96M43 638 aa13.26□□□□□ -0.29
HDAC3-210ENST00000490808 TNS1Q9HBL0 1735 aaKnown RBP13.26□□□□□ -0.29
HDAC3-210ENST00000490808 HMOX1P09601 288 aa13.25□□□□□ -0.29
HDAC3-210ENST00000490808 FAM196AQ6ZSG2 479 aa13.25□□□□□ -0.29
HDAC3-210ENST00000490808 EYA1Q99502 592 aa13.25□□□□□ -0.29
HDAC3-210ENST00000490808 PKD1L3Q7Z443 1732 aa13.25□□□□□ -0.29
HDAC3-210ENST00000490808 MS4A1P11836 297 aa13.24□□□□□ -0.29
HDAC3-210ENST00000490808 EZH2Q15910 746 aaKnown RBP13.24□□□□□ -0.29
HDAC3-210ENST00000490808 GNAI1P63096 354 aa13.23□□□□□ -0.29
HDAC3-210ENST00000490808 AMOTQ4VCS5 1084 aa13.23□□□□□ -0.29
HDAC3-210ENST00000490808 ZNF428Q96B54 188 aa13.23□□□□□ -0.29
HDAC3-210ENST00000490808 CCDC136Q96JN2 1154 aa13.23□□□□□ -0.29
HDAC3-210ENST00000490808 SPG7Q9UQ90 795 aa13.23□□□□□ -0.29
HDAC3-210ENST00000490808 PCDH11XQ9BZA7 1347 aa13.22□□□□□ -0.29
HDAC3-210ENST00000490808 PCDH11YQ9BZA8 1340 aa13.22□□□□□ -0.29
HDAC3-210ENST00000490808 SULT6B1Q6IMI4 303 aa13.22□□□□□ -0.29
HDAC3-210ENST00000490808 ZCRB1Q8TBF4 217 aaKnown RBP13.22□□□□□ -0.29
HDAC3-210ENST00000490808 TRIM35Q9UPQ4 493 aa13.22□□□□□ -0.29
HDAC3-210ENST00000490808 SBF2Q86WG5 1849 aa13.21□□□□□ -0.29
HDAC3-210ENST00000490808 DCAF8L1A6NGE4 600 aa13.21□□□□□ -0.29
HDAC3-210ENST00000490808 HMGB2P26583 209 aaKnown RBP13.21□□□□□ -0.29
HDAC3-210ENST00000490808 CANXP27824 592 aaKnown RBP13.21□□□□□ -0.29
HDAC3-210ENST00000490808 MEGF6O75095 1541 aa13.2□□□□□ -0.3
HDAC3-210ENST00000490808 AAMPQ13685 434 aa13.2□□□□□ -0.3
HDAC3-210ENST00000490808 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
HDAC3-210ENST00000490808 GAS2L2Q8NHY3 880 aa13.2□□□□□ -0.3
HDAC3-210ENST00000490808 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms