RNA–Protein interactions for RNA: ENST00000490447.6

YIPF3-208, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 1,321 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-208ENST00000490447 RAPGEF4Q8WZA2 1011 aa24.78■■□□□ 1.56
YIPF3-208ENST00000490447 SYT17Q9BSW7 474 aa24.78■■□□□ 1.56
YIPF3-208ENST00000490447 CGNL1Q0VF96 1302 aa24.77■■□□□ 1.56
YIPF3-208ENST00000490447 NBPF6Q5VWK0 638 aa24.77■■□□□ 1.56
YIPF3-208ENST00000490447 NBPF4Q96M43 638 aa24.77■■□□□ 1.56
YIPF3-208ENST00000490447 ARXQ96QS3 562 aa24.77■■□□□ 1.56
YIPF3-208ENST00000490447 SGIP1Q9BQI5 828 aa24.77■■□□□ 1.56
YIPF3-208ENST00000490447 USHBP1Q8N6Y0 703 aa24.76■■□□□ 1.55
YIPF3-208ENST00000490447 DOT1LQ8TEK3 1739 aa24.75■■□□□ 1.55
YIPF3-208ENST00000490447 AKT1S1Q96B36 256 aa24.75■■□□□ 1.55
YIPF3-208ENST00000490447 TATP17735 454 aaPredicted RBP24.74■■□□□ 1.55
YIPF3-208ENST00000490447 TFCP2L1Q9NZI6 479 aa24.74■■□□□ 1.55
YIPF3-208ENST00000490447 RGPD2P0DJD1 1756 aa24.74■■□□□ 1.55
YIPF3-208ENST00000490447 FLT4P35916 1363 aa24.73■■□□□ 1.55
YIPF3-208ENST00000490447 SLC16A10Q8TF71 515 aa24.73■■□□□ 1.55
YIPF3-208ENST00000490447 INSRP06213 1382 aa24.73■■□□□ 1.55
YIPF3-208ENST00000490447 KIF20BQ96Q89 1820 aa24.72■■□□□ 1.55
YIPF3-208ENST00000490447 NSD2O96028 1365 aa24.72■■□□□ 1.55
YIPF3-208ENST00000490447 KIF24Q5T7B8 1368 aa24.72■■□□□ 1.55
YIPF3-208ENST00000490447 POLD1P28340 1107 aa24.71■■□□□ 1.55
YIPF3-208ENST00000490447 HSP90AB2PQ58FF8 381 aa24.71■■□□□ 1.55
YIPF3-208ENST00000490447 CCNL1Q9UK58 526 aaPredicted RBP24.71■■□□□ 1.55
YIPF3-208ENST00000490447 SHANK3Q9BYB0 1731 aa24.71■■□□□ 1.55
YIPF3-208ENST00000490447 KCNQ4P56696 695 aa24.7■■□□□ 1.54
YIPF3-208ENST00000490447 NSD3Q9BZ95 1437 aa24.7■■□□□ 1.54
YIPF3-208ENST00000490447 TIMELESSQ9UNS1 1208 aa24.7■■□□□ 1.54
YIPF3-208ENST00000490447 PNPLA7Q6ZV29 1317 aa24.7■■□□□ 1.54
YIPF3-208ENST00000490447 PCDH11XQ9BZA7 1347 aa24.7■■□□□ 1.54
YIPF3-208ENST00000490447 PCDH11YQ9BZA8 1340 aa24.7■■□□□ 1.54
YIPF3-208ENST00000490447 MAP3K5Q99683 1374 aa24.68■■□□□ 1.54
YIPF3-208ENST00000490447 KLHL34Q8N239 644 aa24.67■■□□□ 1.54
YIPF3-208ENST00000490447 QSER1Q2KHR3 1735 aa24.67■■□□□ 1.54
YIPF3-208ENST00000490447 CARD14Q9BXL6 1004 aa24.65■■□□□ 1.54
YIPF3-208ENST00000490447 LY75O60449 1722 aa24.65■■□□□ 1.54
YIPF3-208ENST00000490447 PPM1GO15355 546 aaPredicted RBP24.64■■□□□ 1.54
YIPF3-208ENST00000490447 EMILIN1Q9Y6C2 1016 aa24.64■■□□□ 1.54
YIPF3-208ENST00000490447 MSH5O43196 834 aa24.63■■□□□ 1.53
YIPF3-208ENST00000490447 HMGB2P26583 209 aaKnown RBP24.62■■□□□ 1.53
YIPF3-208ENST00000490447 CLSPNQ9HAW4 1339 aa24.61■■□□□ 1.53
YIPF3-208ENST00000490447 GPR162Q16538 588 aa24.61■■□□□ 1.53
YIPF3-208ENST00000490447 MPRIPQ6WCQ1 1025 aa24.61■■□□□ 1.53
YIPF3-208ENST00000490447 POLR3GLQ9BT43 218 aa24.61■■□□□ 1.53
YIPF3-208ENST00000490447 PCGF6Q9BYE7 350 aa24.6■■□□□ 1.53
YIPF3-208ENST00000490447 TUBGCP6Q96RT7 1819 aa24.58■■□□□ 1.53
YIPF3-208ENST00000490447 GOLGB1Q14789 3259 aaKnown RBP24.58■■□□□ 1.53
YIPF3-208ENST00000490447 PALLDQ8WX93 1383 aa24.58■■□□□ 1.53
YIPF3-208ENST00000490447 CYP27B1O15528 508 aa24.58■■□□□ 1.52
YIPF3-208ENST00000490447 ZNF784Q8NCA9 323 aaPredicted RBP24.58■■□□□ 1.52
YIPF3-208ENST00000490447 PELP1Q8IZL8 1130 aaKnown RBP24.57■■□□□ 1.52
YIPF3-208ENST00000490447 SPG7Q9UQ90 795 aa24.57■■□□□ 1.52
YIPF3-208ENST00000490447 WASHC2AQ641Q2 1341 aa24.56■■□□□ 1.52
YIPF3-208ENST00000490447 COL23A1Q86Y22 540 aaPredicted RBP24.55■■□□□ 1.52
YIPF3-208ENST00000490447 SMARCC1Q92922 1105 aaPredicted RBP24.55■■□□□ 1.52
YIPF3-208ENST00000490447 COL24A1Q17RW2 1714 aa24.54■■□□□ 1.52
YIPF3-208ENST00000490447 FLAD1Q8NFF5 587 aa24.54■■□□□ 1.52
YIPF3-208ENST00000490447 C5P01031 1676 aa24.53■■□□□ 1.52
YIPF3-208ENST00000490447 PKD1L3Q7Z443 1732 aa24.52■■□□□ 1.52
YIPF3-208ENST00000490447 NCAPD2Q15021 1401 aa24.52■■□□□ 1.52
YIPF3-208ENST00000490447 ANKRD26Q9UPS8 1709 aa24.52■■□□□ 1.52
YIPF3-208ENST00000490447 MSL1Q68DK7 614 aa24.51■■□□□ 1.51
YIPF3-208ENST00000490447 NLGN2Q8NFZ4 835 aa24.51■■□□□ 1.51
YIPF3-208ENST00000490447 AK7Q96M32 723 aa24.51■■□□□ 1.51
YIPF3-208ENST00000490447 CHD4Q14839 1912 aa24.5■■□□□ 1.51
YIPF3-208ENST00000490447 TNNT2P45379 298 aaPredicted RBP24.5■■□□□ 1.51
YIPF3-208ENST00000490447 EYA1Q99502 592 aa24.5■■□□□ 1.51
YIPF3-208ENST00000490447 POLKQ9UBT6 870 aa24.5■■□□□ 1.51
YIPF3-208ENST00000490447 EIF4G2P78344 907 aaKnown RBP eCLIP24.49■■□□□ 1.51
YIPF3-208ENST00000490447 NKX1-1Q15270 411 aaPredicted RBP24.49■■□□□ 1.51
YIPF3-208ENST00000490447 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.49■■□□□ 1.51
YIPF3-208ENST00000490447 TOGARAM1Q9Y4F4 1720 aa24.49■■□□□ 1.51
YIPF3-208ENST00000490447 PIGBQ92521 554 aa24.48■■□□□ 1.51
YIPF3-208ENST00000490447 TMOD3Q9NYL9 352 aa24.47■■□□□ 1.51
YIPF3-208ENST00000490447 IFNL2Q8IZJ0 200 aa24.46■■□□□ 1.51
YIPF3-208ENST00000490447 MAP2P11137 1827 aaKnown RBP24.45■■□□□ 1.5
YIPF3-208ENST00000490447 ITGB4P16144 1822 aa24.45■■□□□ 1.5
YIPF3-208ENST00000490447 C4BP0C0L5 1744 aa24.45■■□□□ 1.5
YIPF3-208ENST00000490447 PHF14O94880 888 aa24.44■■□□□ 1.5
YIPF3-208ENST00000490447 EIF4A2Q14240 407 aaKnown RBP24.44■■□□□ 1.5
YIPF3-208ENST00000490447 TAF1LQ8IZX4 1826 aa24.44■■□□□ 1.5
YIPF3-208ENST00000490447 GRIN3BO60391 1043 aa24.43■■□□□ 1.5
YIPF3-208ENST00000490447 HSPA5P11021 654 aaKnown RBP24.43■■□□□ 1.5
YIPF3-208ENST00000490447 PHKG2P15735 406 aa24.43■■□□□ 1.5
YIPF3-208ENST00000490447 LOC102724428A0A0B4J2F2 783 aa24.42■■□□□ 1.5
YIPF3-208ENST00000490447 SIK1P57059 783 aa24.42■■□□□ 1.5
YIPF3-208ENST00000490447 PANK3Q9H999 370 aa24.41■■□□□ 1.5
YIPF3-208ENST00000490447 PLEKHG2Q9H7P9 1386 aa24.4■■□□□ 1.5
YIPF3-208ENST00000490447 CD2APQ9Y5K6 639 aa24.4■■□□□ 1.5
YIPF3-208ENST00000490447 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.39■■□□□ 1.5
YIPF3-208ENST00000490447 SSFA2P28290 1259 aa24.39■■□□□ 1.5
YIPF3-208ENST00000490447 YBX3P16989 372 aaKnown RBP eCLIP24.38■■□□□ 1.492e-8■■■■□ 22.5
YIPF3-208ENST00000490447 ATP6V1AP38606 617 aa24.38■■□□□ 1.49
YIPF3-208ENST00000490447 LINC00116Q8NCU8 138 aa24.38■■□□□ 1.49
YIPF3-208ENST00000490447 CCER1Q8TC90 406 aaPredicted RBP24.38■■□□□ 1.49
YIPF3-208ENST00000490447 ASAP1Q9ULH1 1129 aa24.38■■□□□ 1.49
YIPF3-208ENST00000490447 IGSF1Q8N6C5 1336 aa24.37■■□□□ 1.49
YIPF3-208ENST00000490447 AMIGO3Q86WK7 504 aa24.36■■□□□ 1.49
YIPF3-208ENST00000490447 GNPATO15228 680 aa24.35■■□□□ 1.49
YIPF3-208ENST00000490447 HSP90AB1P08238 724 aaKnown RBP24.35■■□□□ 1.49
YIPF3-208ENST00000490447 C1QTNF8P60827 252 aa24.35■■□□□ 1.49
YIPF3-208ENST00000490447 PLEKHO1Q53GL0 409 aaPredicted RBP24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms