RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 LY75O60449 1722 aa19.79■□□□□ 0.76
VARS-227ENST00000489979 ANKRD36BQ8N2N9 1353 aa19.79■□□□□ 0.76
VARS-227ENST00000489979 RGPD2P0DJD1 1756 aa19.78■□□□□ 0.76
VARS-227ENST00000489979 NLGN2Q8NFZ4 835 aa19.78■□□□□ 0.76
VARS-227ENST00000489979 NSD2O96028 1365 aa19.78■□□□□ 0.76
VARS-227ENST00000489979 SHANK3Q9BYB0 1731 aa19.77■□□□□ 0.76
VARS-227ENST00000489979 MAP3K19Q56UN5 1328 aa19.76■□□□□ 0.75
VARS-227ENST00000489979 GIGYF1O75420 1035 aaPredicted RBP19.76■□□□□ 0.75
VARS-227ENST00000489979 FBLN1P23142 703 aa19.76■□□□□ 0.75
VARS-227ENST00000489979 HOXC9P31274 260 aa19.76■□□□□ 0.75
VARS-227ENST00000489979 AMPHP49418 695 aa19.76■□□□□ 0.75
VARS-227ENST00000489979 ZCRB1Q8TBF4 217 aaKnown RBP19.76■□□□□ 0.75
VARS-227ENST00000489979 PUS7Q96PZ0 661 aaKnown RBP19.76■□□□□ 0.75
VARS-227ENST00000489979 COG3Q96JB2 828 aa19.75■□□□□ 0.75
VARS-227ENST00000489979 CCNL1Q9UK58 526 aaPredicted RBP19.75■□□□□ 0.75
VARS-227ENST00000489979 MEGF6O75095 1541 aa19.74■□□□□ 0.75
VARS-227ENST00000489979 MSH5O43196 834 aa19.73■□□□□ 0.75
VARS-227ENST00000489979 COL23A1Q86Y22 540 aaPredicted RBP19.72■□□□□ 0.75
VARS-227ENST00000489979 YBX3P16989 372 aaKnown RBP eCLIP19.71■□□□□ 0.753e-7■□□□□ 9.1
VARS-227ENST00000489979 USP47Q96K76 1375 aa19.7■□□□□ 0.74
VARS-227ENST00000489979 GRIN3BO60391 1043 aa19.7■□□□□ 0.74
VARS-227ENST00000489979 NBPF6Q5VWK0 638 aa19.69■□□□□ 0.74
VARS-227ENST00000489979 MSL1Q68DK7 614 aa19.69■□□□□ 0.74
VARS-227ENST00000489979 NBPF4Q96M43 638 aa19.69■□□□□ 0.74
VARS-227ENST00000489979 TESK2Q96S53 571 aa19.69■□□□□ 0.74
VARS-227ENST00000489979 RRS1Q15050 365 aaKnown RBP19.68■□□□□ 0.74
VARS-227ENST00000489979 USHBP1Q8N6Y0 703 aa19.68■□□□□ 0.74
VARS-227ENST00000489979 ST20-MTHFSA0A0A6YYL1 179 aa19.67■□□□□ 0.74
VARS-227ENST00000489979 RTL1A6NKG5 1358 aa19.67■□□□□ 0.74
VARS-227ENST00000489979 TONSLQ96HA7 1378 aa19.67■□□□□ 0.74
VARS-227ENST00000489979 CGNL1Q0VF96 1302 aa19.66■□□□□ 0.74
VARS-227ENST00000489979 C5P01031 1676 aa19.65■□□□□ 0.74
VARS-227ENST00000489979 RAPGEF4Q8WZA2 1011 aa19.65■□□□□ 0.74
VARS-227ENST00000489979 TAF1LQ8IZX4 1826 aa19.63■□□□□ 0.73
VARS-227ENST00000489979 SMG6Q86US8 1419 aaKnown RBP19.63■□□□□ 0.73
VARS-227ENST00000489979 TATP17735 454 aaPredicted RBP19.63■□□□□ 0.73
VARS-227ENST00000489979 GGNBP2Q9H3C7 697 aa19.63■□□□□ 0.73
VARS-227ENST00000489979 CEP350Q5VT06 3117 aa19.63■□□□□ 0.73
VARS-227ENST00000489979 FYB1O15117 783 aa19.62■□□□□ 0.73
VARS-227ENST00000489979 CD2APQ9Y5K6 639 aa19.62■□□□□ 0.73
VARS-227ENST00000489979 ATP10DQ9P241 1426 aa19.61■□□□□ 0.73
VARS-227ENST00000489979 SLC24A1O60721 1099 aa19.61■□□□□ 0.73
VARS-227ENST00000489979 PALLDQ8WX93 1383 aa19.6■□□□□ 0.73
VARS-227ENST00000489979 PCDH11XQ9BZA7 1347 aa19.6■□□□□ 0.73
VARS-227ENST00000489979 PCDH11YQ9BZA8 1340 aa19.6■□□□□ 0.73
VARS-227ENST00000489979 HSP90AB2PQ58FF8 381 aa19.6■□□□□ 0.73
VARS-227ENST00000489979 MPRIPQ6WCQ1 1025 aa19.6■□□□□ 0.73
VARS-227ENST00000489979 FLAD1Q8NFF5 587 aa19.6■□□□□ 0.73
VARS-227ENST00000489979 HMGB2P26583 209 aaKnown RBP19.58■□□□□ 0.72
VARS-227ENST00000489979 ITGB4P16144 1822 aa19.58■□□□□ 0.72
VARS-227ENST00000489979 INSRP06213 1382 aa19.57■□□□□ 0.72
VARS-227ENST00000489979 C4BP0C0L5 1744 aa19.57■□□□□ 0.72
VARS-227ENST00000489979 TOGARAM1Q9Y4F4 1720 aa19.57■□□□□ 0.72
VARS-227ENST00000489979 CYP27B1O15528 508 aa19.57■□□□□ 0.72
VARS-227ENST00000489979 IFFO2Q5TF58 517 aa19.57■□□□□ 0.72
VARS-227ENST00000489979 AMIGO3Q86WK7 504 aa19.56■□□□□ 0.72
VARS-227ENST00000489979 AK7Q96M32 723 aa19.56■□□□□ 0.72
VARS-227ENST00000489979 GPBP1L1Q9HC44 474 aaPredicted RBP19.56■□□□□ 0.72
VARS-227ENST00000489979 FLT4P35916 1363 aa19.56■□□□□ 0.72
VARS-227ENST00000489979 KIF20BQ96Q89 1820 aa19.55■□□□□ 0.72
VARS-227ENST00000489979 SMARCC1Q92922 1105 aaPredicted RBP19.55■□□□□ 0.72
VARS-227ENST00000489979 UBR3Q6ZT12 1888 aa19.54■□□□□ 0.72
VARS-227ENST00000489979 PHF14O94880 888 aa19.54■□□□□ 0.72
VARS-227ENST00000489979 TMF1P82094 1093 aa19.54■□□□□ 0.72
VARS-227ENST00000489979 SMIM5Q71RC9 77 aa19.54■□□□□ 0.72
VARS-227ENST00000489979 ZNF526Q8TF50 670 aaPredicted RBP19.53■□□□□ 0.72
VARS-227ENST00000489979 WWC3Q9ULE0 1092 aa19.53■□□□□ 0.72
VARS-227ENST00000489979 ADCY9O60503 1353 aa19.53■□□□□ 0.72
VARS-227ENST00000489979 KIF24Q5T7B8 1368 aa19.53■□□□□ 0.72
VARS-227ENST00000489979 IGSF1Q8N6C5 1336 aa19.52■□□□□ 0.72
VARS-227ENST00000489979 PKD1L3Q7Z443 1732 aa19.52■□□□□ 0.72
VARS-227ENST00000489979 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.52■□□□□ 0.72
VARS-227ENST00000489979 PIGBQ92521 554 aa19.52■□□□□ 0.72
VARS-227ENST00000489979 EMILIN1Q9Y6C2 1016 aa19.5■□□□□ 0.71
VARS-227ENST00000489979 MAP2P11137 1827 aaKnown RBP19.5■□□□□ 0.71
VARS-227ENST00000489979 NKX1-1Q15270 411 aaPredicted RBP19.49■□□□□ 0.71
VARS-227ENST00000489979 LINC00116Q8NCU8 138 aa19.49■□□□□ 0.71
VARS-227ENST00000489979 NSD3Q9BZ95 1437 aa19.49■□□□□ 0.71
VARS-227ENST00000489979 LOC102724428A0A0B4J2F2 783 aa19.48■□□□□ 0.71
VARS-227ENST00000489979 HSPA6P17066 643 aa19.48■□□□□ 0.71
VARS-227ENST00000489979 SSFA2P28290 1259 aa19.48■□□□□ 0.71
VARS-227ENST00000489979 SIK1P57059 783 aa19.48■□□□□ 0.71
VARS-227ENST00000489979 SPG7Q9UQ90 795 aa19.47■□□□□ 0.71
VARS-227ENST00000489979 NCAPD2Q15021 1401 aa19.47■□□□□ 0.71
VARS-227ENST00000489979 PPM1GO15355 546 aaPredicted RBP19.46■□□□□ 0.71
VARS-227ENST00000489979 CARD14Q9BXL6 1004 aa19.46■□□□□ 0.71
VARS-227ENST00000489979 CDCA8Q53HL2 280 aa19.45■□□□□ 0.7
VARS-227ENST00000489979 TMOD3Q9NYL9 352 aa19.45■□□□□ 0.7
VARS-227ENST00000489979 GNPATO15228 680 aa19.44■□□□□ 0.7
VARS-227ENST00000489979 ITPK1Q13572 414 aa19.44■□□□□ 0.7
VARS-227ENST00000489979 ASAP1Q9ULH1 1129 aa19.44■□□□□ 0.7
VARS-227ENST00000489979 ATP6V1AP38606 617 aa19.43■□□□□ 0.7
VARS-227ENST00000489979 ANKRD26Q9UPS8 1709 aa19.42■□□□□ 0.7
VARS-227ENST00000489979 EYA1Q99502 592 aa19.42■□□□□ 0.7
VARS-227ENST00000489979 KIF3CO14782 793 aa19.41■□□□□ 0.7
VARS-227ENST00000489979 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.41■□□□□ 0.7
VARS-227ENST00000489979 WASHC2AQ641Q2 1341 aa19.41■□□□□ 0.7
VARS-227ENST00000489979 MMP10P09238 476 aa19.4■□□□□ 0.7
VARS-227ENST00000489979 PHKG2P15735 406 aa19.4■□□□□ 0.7
VARS-227ENST00000489979 IFNL2Q8IZJ0 200 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms