RNA–Protein interactions for RNA: ENST00000489638.5

LTA-216, Transcript of lymphotoxin alpha, humanhuman

TSL 5

Gene LTA, Length 1,377 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTA-216ENST00000489638 COG3Q96JB2 828 aa18.3■□□□□ 0.52
LTA-216ENST00000489638 RGPD2P0DJD1 1756 aa18.3■□□□□ 0.52
LTA-216ENST00000489638 ST20-MTHFSA0A0A6YYL1 179 aa18.3■□□□□ 0.52
LTA-216ENST00000489638 PRIM1P49642 420 aaKnown RBP18.3■□□□□ 0.52
LTA-216ENST00000489638 KCNQ4P56696 695 aa18.3■□□□□ 0.52
LTA-216ENST00000489638 SYTL4Q96C24 671 aaPredicted RBP18.3■□□□□ 0.52
LTA-216ENST00000489638 RTL1A6NKG5 1358 aa18.29■□□□□ 0.52
LTA-216ENST00000489638 AMPHP49418 695 aa18.28■□□□□ 0.52
LTA-216ENST00000489638 POLD1P28340 1107 aa18.27■□□□□ 0.51
LTA-216ENST00000489638 ZCRB1Q8TBF4 217 aaKnown RBP18.27■□□□□ 0.51
LTA-216ENST00000489638 TFCP2L1Q9NZI6 479 aa18.27■□□□□ 0.51
LTA-216ENST00000489638 GPR162Q16538 588 aa18.25■□□□□ 0.51
LTA-216ENST00000489638 KLHL34Q8N239 644 aa18.25■□□□□ 0.51
LTA-216ENST00000489638 RRS1Q15050 365 aaKnown RBP18.24■□□□□ 0.51
LTA-216ENST00000489638 NBPF6Q5VWK0 638 aa18.24■□□□□ 0.51
LTA-216ENST00000489638 NBPF4Q96M43 638 aa18.24■□□□□ 0.51
LTA-216ENST00000489638 CCNL1Q9UK58 526 aaPredicted RBP18.24■□□□□ 0.51
LTA-216ENST00000489638 FYB1O15117 783 aa18.22■□□□□ 0.51
LTA-216ENST00000489638 SLC24A1O60721 1099 aa18.22■□□□□ 0.51
LTA-216ENST00000489638 USHBP1Q8N6Y0 703 aa18.22■□□□□ 0.51
LTA-216ENST00000489638 NLGN2Q8NFZ4 835 aa18.22■□□□□ 0.51
LTA-216ENST00000489638 GGNBP2Q9H3C7 697 aa18.21■□□□□ 0.51
LTA-216ENST00000489638 CGNL1Q0VF96 1302 aa18.21■□□□□ 0.51
LTA-216ENST00000489638 USP47Q96K76 1375 aa18.21■□□□□ 0.51
LTA-216ENST00000489638 SMG6Q86US8 1419 aaKnown RBP18.21■□□□□ 0.51
LTA-216ENST00000489638 C1QTNF8P60827 252 aa18.2■□□□□ 0.5
LTA-216ENST00000489638 INSRP06213 1382 aa18.19■□□□□ 0.5
LTA-216ENST00000489638 COL23A1Q86Y22 540 aaPredicted RBP18.18■□□□□ 0.5
LTA-216ENST00000489638 PELP1Q8IZL8 1130 aaKnown RBP18.18■□□□□ 0.5
LTA-216ENST00000489638 RAPGEF4Q8WZA2 1011 aa18.18■□□□□ 0.5
LTA-216ENST00000489638 C5P01031 1676 aa18.18■□□□□ 0.5
LTA-216ENST00000489638 KIF20BQ96Q89 1820 aa18.18■□□□□ 0.5
LTA-216ENST00000489638 SENP3-EIF4A1A0A087X0R7 540 aa18.17■□□□□ 0.5
LTA-216ENST00000489638 FLT4P35916 1363 aa18.17■□□□□ 0.5
LTA-216ENST00000489638 PCDH11XQ9BZA7 1347 aa18.17■□□□□ 0.5
LTA-216ENST00000489638 PCDH11YQ9BZA8 1340 aa18.17■□□□□ 0.5
LTA-216ENST00000489638 TATP17735 454 aaPredicted RBP18.17■□□□□ 0.5
LTA-216ENST00000489638 TMF1P82094 1093 aa18.17■□□□□ 0.5
LTA-216ENST00000489638 HSP90AB2PQ58FF8 381 aa18.17■□□□□ 0.5
LTA-216ENST00000489638 KIF24Q5T7B8 1368 aa18.16■□□□□ 0.5
LTA-216ENST00000489638 MSH5O43196 834 aa18.16■□□□□ 0.5
LTA-216ENST00000489638 YBX3P16989 372 aaKnown RBP eCLIP18.16■□□□□ 0.5
LTA-216ENST00000489638 TOGARAM1Q9Y4F4 1720 aa18.16■□□□□ 0.5
LTA-216ENST00000489638 PALLDQ8WX93 1383 aa18.15■□□□□ 0.5
LTA-216ENST00000489638 MSL1Q68DK7 614 aa18.15■□□□□ 0.5
LTA-216ENST00000489638 TAF1LQ8IZX4 1826 aa18.13■□□□□ 0.49
LTA-216ENST00000489638 CYP27B1O15528 508 aa18.13■□□□□ 0.49
LTA-216ENST00000489638 GIGYF1O75420 1035 aaPredicted RBP18.13■□□□□ 0.49
LTA-216ENST00000489638 NCAPD2Q15021 1401 aa18.13■□□□□ 0.49
LTA-216ENST00000489638 PKD1L3Q7Z443 1732 aa18.13■□□□□ 0.49
LTA-216ENST00000489638 GOLGB1Q14789 3259 aaKnown RBP18.13■□□□□ 0.49
LTA-216ENST00000489638 GRIN3BO60391 1043 aa18.11■□□□□ 0.49
LTA-216ENST00000489638 MPRIPQ6WCQ1 1025 aa18.11■□□□□ 0.49
LTA-216ENST00000489638 C4BP0C0L5 1744 aa18.11■□□□□ 0.49
LTA-216ENST00000489638 CARD14Q9BXL6 1004 aa18.1■□□□□ 0.49
LTA-216ENST00000489638 EMILIN1Q9Y6C2 1016 aa18.1■□□□□ 0.49
LTA-216ENST00000489638 NSD3Q9BZ95 1437 aa18.1■□□□□ 0.49
LTA-216ENST00000489638 ANKRD26Q9UPS8 1709 aa18.09■□□□□ 0.49
LTA-216ENST00000489638 ITGB4P16144 1822 aa18.09■□□□□ 0.49
LTA-216ENST00000489638 FLAD1Q8NFF5 587 aa18.09■□□□□ 0.49
LTA-216ENST00000489638 CDCA8Q53HL2 280 aa18.08■□□□□ 0.49
LTA-216ENST00000489638 AMIGO3Q86WK7 504 aa18.08■□□□□ 0.49
LTA-216ENST00000489638 CD2APQ9Y5K6 639 aa18.08■□□□□ 0.49
LTA-216ENST00000489638 HMGB2P26583 209 aaKnown RBP18.07■□□□□ 0.48
LTA-216ENST00000489638 SMARCC1Q92922 1105 aaPredicted RBP18.07■□□□□ 0.48
LTA-216ENST00000489638 UBR3Q6ZT12 1888 aa18.07■□□□□ 0.48
LTA-216ENST00000489638 PIGBQ92521 554 aa18.06■□□□□ 0.48
LTA-216ENST00000489638 MAP2P11137 1827 aaKnown RBP18.05■□□□□ 0.48
LTA-216ENST00000489638 NKX1-1Q15270 411 aaPredicted RBP18.05■□□□□ 0.48
LTA-216ENST00000489638 AK7Q96M32 723 aa18.05■□□□□ 0.48
LTA-216ENST00000489638 ATP10DQ9P241 1426 aa18.05■□□□□ 0.48
LTA-216ENST00000489638 ADCY9O60503 1353 aa18.04■□□□□ 0.48
LTA-216ENST00000489638 SMIM5Q71RC9 77 aa18.04■□□□□ 0.48
LTA-216ENST00000489638 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.03■□□□□ 0.48
LTA-216ENST00000489638 PHF14O94880 888 aa18.03■□□□□ 0.48
LTA-216ENST00000489638 SPG7Q9UQ90 795 aa18.03■□□□□ 0.48
LTA-216ENST00000489638 WASHC2AQ641Q2 1341 aa18.02■□□□□ 0.48
LTA-216ENST00000489638 LOC102724428A0A0B4J2F2 783 aa18.02■□□□□ 0.47
LTA-216ENST00000489638 PPM1GO15355 546 aaPredicted RBP18.02■□□□□ 0.47
LTA-216ENST00000489638 SIK1P57059 783 aa18.02■□□□□ 0.47
LTA-216ENST00000489638 LINC00116Q8NCU8 138 aa18.02■□□□□ 0.47
LTA-216ENST00000489638 SSFA2P28290 1259 aa18.01■□□□□ 0.47
LTA-216ENST00000489638 EYA1Q99502 592 aa18.01■□□□□ 0.47
LTA-216ENST00000489638 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.01■□□□□ 0.47
LTA-216ENST00000489638 IGSF1Q8N6C5 1336 aa18■□□□□ 0.47
LTA-216ENST00000489638 ITPK1Q13572 414 aa17.99■□□□□ 0.47
LTA-216ENST00000489638 TMOD3Q9NYL9 352 aa17.99■□□□□ 0.47
LTA-216ENST00000489638 PHKG2P15735 406 aa17.98■□□□□ 0.47
LTA-216ENST00000489638 POLKQ9UBT6 870 aa17.98■□□□□ 0.47
LTA-216ENST00000489638 ASAP1Q9ULH1 1129 aa17.98■□□□□ 0.47
LTA-216ENST00000489638 KDRP35968 1356 aa17.96■□□□□ 0.47
LTA-216ENST00000489638 PLEKHG2Q9H7P9 1386 aa17.96■□□□□ 0.47
LTA-216ENST00000489638 GNPATO15228 680 aa17.96■□□□□ 0.47
LTA-216ENST00000489638 IFNL2Q8IZJ0 200 aa17.96■□□□□ 0.47
LTA-216ENST00000489638 GPBP1L1Q9HC44 474 aaPredicted RBP17.96■□□□□ 0.47
LTA-216ENST00000489638 WWC3Q9ULE0 1092 aa17.96■□□□□ 0.47
LTA-216ENST00000489638 ATP6V1AP38606 617 aa17.95■□□□□ 0.46
LTA-216ENST00000489638 ATG3Q9NT62 314 aa17.95■□□□□ 0.46
LTA-216ENST00000489638 CICQ96RK0 1608 aaPredicted RBP17.95■□□□□ 0.46
LTA-216ENST00000489638 EIF4A2Q14240 407 aaKnown RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms