RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 LY75O60449 1722 aa17.38■□□□□ 0.37
CPSF3-204ENST00000489403 TRIM26Q12899 539 aaPredicted RBP17.37■□□□□ 0.37
CPSF3-204ENST00000489403 SLC27A3Q5K4L6 730 aa17.37■□□□□ 0.37
CPSF3-204ENST00000489403 AKT1S1Q96B36 256 aa17.37■□□□□ 0.37
CPSF3-204ENST00000489403 SYT17Q9BSW7 474 aa17.37■□□□□ 0.37
CPSF3-204ENST00000489403 ZCRB1Q8TBF4 217 aaKnown RBP17.36■□□□□ 0.37
CPSF3-204ENST00000489403 SYTL4Q96C24 671 aaPredicted RBP17.36■□□□□ 0.37
CPSF3-204ENST00000489403 PRIM1P49642 420 aaKnown RBP17.35■□□□□ 0.37
CPSF3-204ENST00000489403 NBPF6Q5VWK0 638 aa17.35■□□□□ 0.37
CPSF3-204ENST00000489403 NBPF4Q96M43 638 aa17.35■□□□□ 0.37
CPSF3-204ENST00000489403 UTRNP46939 3433 aa17.34■□□□□ 0.37
CPSF3-204ENST00000489403 COL24A1Q17RW2 1714 aa17.34■□□□□ 0.37
CPSF3-204ENST00000489403 SMG6Q86US8 1419 aaKnown RBP17.34■□□□□ 0.37
CPSF3-204ENST00000489403 USHBP1Q8N6Y0 703 aa17.34■□□□□ 0.37
CPSF3-204ENST00000489403 ARXQ96QS3 562 aa17.34■□□□□ 0.37
CPSF3-204ENST00000489403 PNPLA7Q6ZV29 1317 aa17.33■□□□□ 0.36
CPSF3-204ENST00000489403 KCNQ4P56696 695 aa17.33■□□□□ 0.36
CPSF3-204ENST00000489403 INSRP06213 1382 aa17.32■□□□□ 0.36
CPSF3-204ENST00000489403 MAP3K5Q99683 1374 aa17.32■□□□□ 0.36
CPSF3-204ENST00000489403 CDCA8Q53HL2 280 aa17.32■□□□□ 0.36
CPSF3-204ENST00000489403 FLT4P35916 1363 aa17.31■□□□□ 0.36
CPSF3-204ENST00000489403 CGNL1Q0VF96 1302 aa17.31■□□□□ 0.36
CPSF3-204ENST00000489403 HSP90AB2PQ58FF8 381 aa17.31■□□□□ 0.36
CPSF3-204ENST00000489403 NSD3Q9BZ95 1437 aa17.3■□□□□ 0.36
CPSF3-204ENST00000489403 SLC16A10Q8TF71 515 aa17.3■□□□□ 0.36
CPSF3-204ENST00000489403 RAPGEF4Q8WZA2 1011 aa17.3■□□□□ 0.36
CPSF3-204ENST00000489403 KIF24Q5T7B8 1368 aa17.29■□□□□ 0.36
CPSF3-204ENST00000489403 TATP17735 454 aaPredicted RBP17.29■□□□□ 0.36
CPSF3-204ENST00000489403 CARD14Q9BXL6 1004 aa17.29■□□□□ 0.36
CPSF3-204ENST00000489403 TFCP2L1Q9NZI6 479 aa17.29■□□□□ 0.36
CPSF3-204ENST00000489403 ANKRD26Q9UPS8 1709 aa17.28■□□□□ 0.36
CPSF3-204ENST00000489403 CHD4Q14839 1912 aa17.28■□□□□ 0.36
CPSF3-204ENST00000489403 CCNL1Q9UK58 526 aaPredicted RBP17.28■□□□□ 0.36
CPSF3-204ENST00000489403 PKD1L3Q7Z443 1732 aa17.27■□□□□ 0.36
CPSF3-204ENST00000489403 TOGARAM1Q9Y4F4 1720 aa17.27■□□□□ 0.36
CPSF3-204ENST00000489403 EMILIN1Q9Y6C2 1016 aa17.27■□□□□ 0.36
CPSF3-204ENST00000489403 C5P01031 1676 aa17.26■□□□□ 0.35
CPSF3-204ENST00000489403 PCDH11XQ9BZA7 1347 aa17.26■□□□□ 0.35
CPSF3-204ENST00000489403 PCDH11YQ9BZA8 1340 aa17.26■□□□□ 0.35
CPSF3-204ENST00000489403 NCAPD2Q15021 1401 aa17.25■□□□□ 0.35
CPSF3-204ENST00000489403 POLD1P28340 1107 aa17.25■□□□□ 0.35
CPSF3-204ENST00000489403 ITGB4P16144 1822 aa17.24■□□□□ 0.35
CPSF3-204ENST00000489403 TAF1LQ8IZX4 1826 aa17.24■□□□□ 0.35
CPSF3-204ENST00000489403 ZNF784Q8NCA9 323 aaPredicted RBP17.24■□□□□ 0.35
CPSF3-204ENST00000489403 CYP27B1O15528 508 aa17.23■□□□□ 0.35
CPSF3-204ENST00000489403 KLHL34Q8N239 644 aa17.23■□□□□ 0.35
CPSF3-204ENST00000489403 TIMELESSQ9UNS1 1208 aa17.23■□□□□ 0.35
CPSF3-204ENST00000489403 MAP2P11137 1827 aaKnown RBP17.23■□□□□ 0.35
CPSF3-204ENST00000489403 PALLDQ8WX93 1383 aa17.22■□□□□ 0.35
CPSF3-204ENST00000489403 COL23A1Q86Y22 540 aaPredicted RBP17.21■□□□□ 0.35
CPSF3-204ENST00000489403 PPM1GO15355 546 aaPredicted RBP17.2■□□□□ 0.34
CPSF3-204ENST00000489403 MSH5O43196 834 aa17.2■□□□□ 0.34
CPSF3-204ENST00000489403 GPR162Q16538 588 aa17.2■□□□□ 0.34
CPSF3-204ENST00000489403 MPRIPQ6WCQ1 1025 aa17.2■□□□□ 0.34
CPSF3-204ENST00000489403 NLGN2Q8NFZ4 835 aa17.2■□□□□ 0.34
CPSF3-204ENST00000489403 GOLGB1Q14789 3259 aaKnown RBP17.19■□□□□ 0.34
CPSF3-204ENST00000489403 WASHC2AQ641Q2 1341 aa17.19■□□□□ 0.34
CPSF3-204ENST00000489403 CLSPNQ9HAW4 1339 aa17.19■□□□□ 0.34
CPSF3-204ENST00000489403 C4BP0C0L5 1744 aa17.18■□□□□ 0.34
CPSF3-204ENST00000489403 MSL1Q68DK7 614 aa17.17■□□□□ 0.34
CPSF3-204ENST00000489403 EYA1Q99502 592 aa17.17■□□□□ 0.34
CPSF3-204ENST00000489403 NKX1-1Q15270 411 aaPredicted RBP17.16■□□□□ 0.34
CPSF3-204ENST00000489403 PELP1Q8IZL8 1130 aaKnown RBP17.16■□□□□ 0.34
CPSF3-204ENST00000489403 POLKQ9UBT6 870 aa17.16■□□□□ 0.34
CPSF3-204ENST00000489403 UBR3Q6ZT12 1888 aa17.16■□□□□ 0.34
CPSF3-204ENST00000489403 PIGBQ92521 554 aa17.15■□□□□ 0.34
CPSF3-204ENST00000489403 SMARCC1Q92922 1105 aaPredicted RBP17.15■□□□□ 0.34
CPSF3-204ENST00000489403 POLR3GLQ9BT43 218 aa17.15■□□□□ 0.34
CPSF3-204ENST00000489403 SPG7Q9UQ90 795 aa17.15■□□□□ 0.34
CPSF3-204ENST00000489403 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
CPSF3-204ENST00000489403 HMGB2P26583 209 aaKnown RBP17.13■□□□□ 0.33
CPSF3-204ENST00000489403 AMIGO3Q86WK7 504 aa17.13■□□□□ 0.33
CPSF3-204ENST00000489403 FLAD1Q8NFF5 587 aa17.13■□□□□ 0.33
CPSF3-204ENST00000489403 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.13■□□□□ 0.332e-6■□□□□ 8.4
CPSF3-204ENST00000489403 EIF4A2Q14240 407 aaKnown RBP17.12■□□□□ 0.33
CPSF3-204ENST00000489403 AK7Q96M32 723 aa17.12■□□□□ 0.33
CPSF3-204ENST00000489403 PHKG2P15735 406 aa17.11■□□□□ 0.33
CPSF3-204ENST00000489403 YBX3P16989 372 aaKnown RBP eCLIP17.11■□□□□ 0.33
CPSF3-204ENST00000489403 TNNT2P45379 298 aaPredicted RBP17.11■□□□□ 0.33
CPSF3-204ENST00000489403 LOC102724428A0A0B4J2F2 783 aa17.1■□□□□ 0.33
CPSF3-204ENST00000489403 SIK1P57059 783 aa17.1■□□□□ 0.33
CPSF3-204ENST00000489403 SMIM5Q71RC9 77 aa17.1■□□□□ 0.33
CPSF3-204ENST00000489403 IFNL2Q8IZJ0 200 aa17.1■□□□□ 0.33
CPSF3-204ENST00000489403 TMOD3Q9NYL9 352 aa17.1■□□□□ 0.33
CPSF3-204ENST00000489403 PHF14O94880 888 aa17.09■□□□□ 0.33
CPSF3-204ENST00000489403 HSPA5P11021 654 aaKnown RBP17.09■□□□□ 0.33
CPSF3-204ENST00000489403 EIF4G2P78344 907 aaKnown RBP eCLIP17.09■□□□□ 0.33
CPSF3-204ENST00000489403 LINC00116Q8NCU8 138 aa17.09■□□□□ 0.33
CPSF3-204ENST00000489403 ASAP1Q9ULH1 1129 aa17.09■□□□□ 0.33
CPSF3-204ENST00000489403 PLEKHG2Q9H7P9 1386 aa17.09■□□□□ 0.33
CPSF3-204ENST00000489403 IGSF1Q8N6C5 1336 aa17.08■□□□□ 0.32
CPSF3-204ENST00000489403 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.08■□□□□ 0.32
CPSF3-204ENST00000489403 CD2APQ9Y5K6 639 aa17.08■□□□□ 0.32
CPSF3-204ENST00000489403 GRIN3BO60391 1043 aa17.07■□□□□ 0.32
CPSF3-204ENST00000489403 SSFA2P28290 1259 aa17.07■□□□□ 0.32
CPSF3-204ENST00000489403 ITPK1Q13572 414 aa17.07■□□□□ 0.32
CPSF3-204ENST00000489403 PANK3Q9H999 370 aa17.07■□□□□ 0.32
CPSF3-204ENST00000489403 C1QTNF8P60827 252 aa17.06■□□□□ 0.32
CPSF3-204ENST00000489403 ATG3Q9NT62 314 aa17.06■□□□□ 0.32
CPSF3-204ENST00000489403 ATP6V1AP38606 617 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms