RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 PLSCR1O15162 318 aa19.35■□□□□ 0.69
VTI1A-206ENST00000489142 NBPF14Q5TI25 921 aa19.34■□□□□ 0.69
VTI1A-206ENST00000489142 PROM2Q8N271 834 aa19.34■□□□□ 0.69
VTI1A-206ENST00000489142 ANO8Q9HCE9 1232 aaPredicted RBP19.33■□□□□ 0.68
VTI1A-206ENST00000489142 TXNRD1Q16881 649 aa19.31■□□□□ 0.68
VTI1A-206ENST00000489142 ZCRB1Q8TBF4 217 aaKnown RBP19.31■□□□□ 0.68
VTI1A-206ENST00000489142 KIF24Q5T7B8 1368 aa19.31■□□□□ 0.68
VTI1A-206ENST00000489142 KIF7Q2M1P5 1343 aa19.29■□□□□ 0.68
VTI1A-206ENST00000489142 RAPGEF4Q8WZA2 1011 aa19.29■□□□□ 0.68
VTI1A-206ENST00000489142 POLKQ9UBT6 870 aa19.29■□□□□ 0.68
VTI1A-206ENST00000489142 SYTL4Q96C24 671 aaPredicted RBP19.28■□□□□ 0.68
VTI1A-206ENST00000489142 CASZ1Q86V15 1759 aa19.27■□□□□ 0.68
VTI1A-206ENST00000489142 TATP17735 454 aaPredicted RBP19.27■□□□□ 0.68
VTI1A-206ENST00000489142 PRIM1P49642 420 aaKnown RBP19.26■□□□□ 0.67
VTI1A-206ENST00000489142 PDGFDQ9GZP0 370 aaPredicted RBP19.26■□□□□ 0.67
VTI1A-206ENST00000489142 WASHC2AQ641Q2 1341 aa19.25■□□□□ 0.67
VTI1A-206ENST00000489142 PKD1L3Q7Z443 1732 aa19.25■□□□□ 0.67
VTI1A-206ENST00000489142 PAPPAQ13219 1627 aa19.25■□□□□ 0.67
VTI1A-206ENST00000489142 NSD2O96028 1365 aa19.24■□□□□ 0.67
VTI1A-206ENST00000489142 TOGARAM1Q9Y4F4 1720 aa19.23■□□□□ 0.67
VTI1A-206ENST00000489142 EYA1Q99502 592 aa19.23■□□□□ 0.67
VTI1A-206ENST00000489142 NCAPD2Q15021 1401 aa19.23■□□□□ 0.67
VTI1A-206ENST00000489142 KCNQ4P56696 695 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 EIF4A2Q14240 407 aaKnown RBP19.22■□□□□ 0.67
VTI1A-206ENST00000489142 MORC1Q86VD1 984 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 STK32BQ9NY57 414 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 KNSTRNQ9Y448 316 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 LY75O60449 1722 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 PCDH11XQ9BZA7 1347 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 PCDH11YQ9BZA8 1340 aa19.22■□□□□ 0.67
VTI1A-206ENST00000489142 LRRC4BQ9NT99 713 aa19.21■□□□□ 0.67
VTI1A-206ENST00000489142 ITGB4P16144 1822 aa19.21■□□□□ 0.67
VTI1A-206ENST00000489142 SLC15A2Q16348 729 aa19.2■□□□□ 0.66
VTI1A-206ENST00000489142 CYP27B1O15528 508 aa19.19■□□□□ 0.66
VTI1A-206ENST00000489142 ZBTB7AO95365 584 aa19.19■□□□□ 0.66
VTI1A-206ENST00000489142 ZNF827Q17R98 1081 aa19.19■□□□□ 0.66
VTI1A-206ENST00000489142 TUBGCP6Q96RT7 1819 aa19.18■□□□□ 0.66
VTI1A-206ENST00000489142 SPON1Q9HCB6 807 aa19.18■□□□□ 0.66
VTI1A-206ENST00000489142 CNGB1Q14028 1251 aaPredicted RBP19.17■□□□□ 0.66
VTI1A-206ENST00000489142 AMER1Q5JTC6 1135 aaPredicted RBP19.17■□□□□ 0.66
VTI1A-206ENST00000489142 ATF5Q9Y2D1 282 aaPredicted RBP19.15■□□□□ 0.66
VTI1A-206ENST00000489142 CC2D1BQ5T0F9 858 aaKnown RBP19.14■□□□□ 0.65
VTI1A-206ENST00000489142 MPRIPQ6WCQ1 1025 aa19.14■□□□□ 0.65
VTI1A-206ENST00000489142 PPP1R1BQ9UD71 204 aaPredicted RBP19.14■□□□□ 0.65
VTI1A-206ENST00000489142 SPG7Q9UQ90 795 aa19.14■□□□□ 0.65
VTI1A-206ENST00000489142 IGSF1Q8N6C5 1336 aa19.13■□□□□ 0.65
VTI1A-206ENST00000489142 C5P01031 1676 aa19.12■□□□□ 0.65
VTI1A-206ENST00000489142 SLC27A3Q5K4L6 730 aa19.12■□□□□ 0.65
VTI1A-206ENST00000489142 CCNL1Q9UK58 526 aaPredicted RBP19.12■□□□□ 0.65
VTI1A-206ENST00000489142 QSER1Q2KHR3 1735 aa19.11■□□□□ 0.65
VTI1A-206ENST00000489142 PER1O15534 1290 aaPredicted RBP19.11■□□□□ 0.65
VTI1A-206ENST00000489142 AEBP1Q8IUX7 1158 aa19.11■□□□□ 0.65
VTI1A-206ENST00000489142 AKT1S1Q96B36 256 aa19.11■□□□□ 0.65
VTI1A-206ENST00000489142 TAF1LQ8IZX4 1826 aa19.1■□□□□ 0.65
VTI1A-206ENST00000489142 PALLDQ8WX93 1383 aa19.09■□□□□ 0.65
VTI1A-206ENST00000489142 PHKG2P15735 406 aa19.09■□□□□ 0.65
VTI1A-206ENST00000489142 PTGER2P43116 358 aa19.08■□□□□ 0.64
VTI1A-206ENST00000489142 PIGBQ92521 554 aa19.08■□□□□ 0.64
VTI1A-206ENST00000489142 TFCP2L1Q9NZI6 479 aa19.08■□□□□ 0.64
VTI1A-206ENST00000489142 MTHFSP49914 203 aa19.07■□□□□ 0.64
VTI1A-206ENST00000489142 NKX1-1Q15270 411 aaPredicted RBP19.07■□□□□ 0.64
VTI1A-206ENST00000489142 IFNL2Q8IZJ0 200 aa19.07■□□□□ 0.64
VTI1A-206ENST00000489142 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.07■□□□□ 0.643e-6■■□□□ 13.5
VTI1A-206ENST00000489142 PNPLA7Q6ZV29 1317 aa19.06■□□□□ 0.64
VTI1A-206ENST00000489142 IL13P35225 146 aa19.06■□□□□ 0.64
VTI1A-206ENST00000489142 SULT6B1Q6IMI4 303 aa19.06■□□□□ 0.64
VTI1A-206ENST00000489142 MTFR1LQ9H019 292 aa19.06■□□□□ 0.64
VTI1A-206ENST00000489142 ZNF530Q6P9A1 599 aaPredicted RBP19.04■□□□□ 0.64
VTI1A-206ENST00000489142 TMOD3Q9NYL9 352 aa19.04■□□□□ 0.64
VTI1A-206ENST00000489142 C4BP0C0L5 1744 aa19.03■□□□□ 0.64
VTI1A-206ENST00000489142 KDM6AO15550 1401 aaPredicted RBP19.02■□□□□ 0.64
VTI1A-206ENST00000489142 PLEKHO1Q53GL0 409 aaPredicted RBP19.02■□□□□ 0.64
VTI1A-206ENST00000489142 SGIP1Q9BQI5 828 aa19.02■□□□□ 0.64
VTI1A-206ENST00000489142 ASAP1Q9ULH1 1129 aa19.02■□□□□ 0.64
VTI1A-206ENST00000489142 MSH5O43196 834 aa19.01■□□□□ 0.63
VTI1A-206ENST00000489142 HMOX1P09601 288 aa19.01■□□□□ 0.63
VTI1A-206ENST00000489142 SMARCC1Q92922 1105 aaPredicted RBP19.01■□□□□ 0.63
VTI1A-206ENST00000489142 VIRMAQ69YN4 1812 aaKnown RBP19■□□□□ 0.63
VTI1A-206ENST00000489142 KDRP35968 1356 aa19■□□□□ 0.63
VTI1A-206ENST00000489142 COL24A1Q17RW2 1714 aa19■□□□□ 0.63
VTI1A-206ENST00000489142 PLEKHG2Q9H7P9 1386 aa18.99■□□□□ 0.63
VTI1A-206ENST00000489142 NPC1L1Q9UHC9 1359 aa18.99■□□□□ 0.63
VTI1A-206ENST00000489142 SMIM5Q71RC9 77 aa18.99■□□□□ 0.63
VTI1A-206ENST00000489142 COL23A1Q86Y22 540 aaPredicted RBP18.99■□□□□ 0.63
VTI1A-206ENST00000489142 FHDC1Q9C0D6 1143 aaPredicted RBP18.99■□□□□ 0.63
VTI1A-206ENST00000489142 UBR3Q6ZT12 1888 aa18.99■□□□□ 0.63
VTI1A-206ENST00000489142 COL3A1P02461 1466 aaPredicted RBP18.98■□□□□ 0.63
VTI1A-206ENST00000489142 AMOTQ4VCS5 1084 aa18.98■□□□□ 0.63
VTI1A-206ENST00000489142 AMIGO3Q86WK7 504 aa18.98■□□□□ 0.63
VTI1A-206ENST00000489142 ATG3Q9NT62 314 aa18.98■□□□□ 0.63
VTI1A-206ENST00000489142 SCN11AQ9UI33 1791 aa18.98■□□□□ 0.63
VTI1A-206ENST00000489142 LOC102724428A0A0B4J2F2 783 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 DIAPH1O60610 1272 aaKnown RBP18.97■□□□□ 0.63
VTI1A-206ENST00000489142 SIK1P57059 783 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 C1orf141Q5JVX7 400 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 MSL1Q68DK7 614 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 LINC00116Q8NCU8 138 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 DCAF5Q96JK2 942 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 ARXQ96QS3 562 aa18.97■□□□□ 0.63
VTI1A-206ENST00000489142 HSP90AB1P08238 724 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms