RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 NXF1Q9UBU9 619 aaKnown RBP10.34□□□□□ -0.75
PTPN4-212ENST00000488896 WFS1O76024 890 aa10.33□□□□□ -0.76
PTPN4-212ENST00000488896 MYCP01106 439 aaPredicted RBP10.33□□□□□ -0.76
PTPN4-212ENST00000488896 TREML4Q6UXN2 200 aa10.33□□□□□ -0.76
PTPN4-212ENST00000488896 PHTF2Q8N3S3 785 aa10.33□□□□□ -0.76
PTPN4-212ENST00000488896 SOX11P35716 441 aa10.32□□□□□ -0.76
PTPN4-212ENST00000488896 NFX1Q12986 1120 aaKnown RBP10.32□□□□□ -0.76
PTPN4-212ENST00000488896 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.32□□□□□ -0.76
PTPN4-212ENST00000488896 OSBPL3Q9H4L5 887 aa10.32□□□□□ -0.76
PTPN4-212ENST00000488896 A0A1W2PRU2 124 aa10.31□□□□□ -0.76
PTPN4-212ENST00000488896 CYP2U1Q7Z449 544 aa10.31□□□□□ -0.76
PTPN4-212ENST00000488896 PIK3CDO00329 1044 aa10.3□□□□□ -0.76
PTPN4-212ENST00000488896 RNF217Q8TC41 542 aa10.3□□□□□ -0.76
PTPN4-212ENST00000488896 ARHGEF10LQ9HCE6 1279 aa10.3□□□□□ -0.76
PTPN4-212ENST00000488896 RAB6BQ9NRW1 208 aa10.3□□□□□ -0.76
PTPN4-212ENST00000488896 FOXD4L5Q5VV16 416 aaPredicted RBP10.29□□□□□ -0.76
PTPN4-212ENST00000488896 PLPP7Q8NBV4 271 aa10.29□□□□□ -0.76
PTPN4-212ENST00000488896 SLC16A10Q8TF71 515 aa10.29□□□□□ -0.76
PTPN4-212ENST00000488896 NLRP3Q96P20 1036 aa10.29□□□□□ -0.76
PTPN4-212ENST00000488896 ALG2Q9H553 416 aa10.29□□□□□ -0.76
PTPN4-212ENST00000488896 TRAK2O60296 914 aa10.28□□□□□ -0.76
PTPN4-212ENST00000488896 PTSQ03393 145 aa10.28□□□□□ -0.76
PTPN4-212ENST00000488896 PROSER2Q86WR7 435 aaPredicted RBP10.28□□□□□ -0.76
PTPN4-212ENST00000488896 USP4Q13107 963 aa10.27□□□□□ -0.77
PTPN4-212ENST00000488896 PRICKLE2Q7Z3G6 844 aa10.27□□□□□ -0.77
PTPN4-212ENST00000488896 STAU1O95793 577 aaKnown RBP10.26□□□□□ -0.77
PTPN4-212ENST00000488896 SKIP12755 728 aa10.26□□□□□ -0.77
PTPN4-212ENST00000488896 HDGFL1Q5TGJ6 251 aa10.26□□□□□ -0.77
PTPN4-212ENST00000488896 ADAMTS19Q8TE59 1207 aa10.26□□□□□ -0.77
PTPN4-212ENST00000488896 H3BM21 787 aa10.25□□□□□ -0.77
PTPN4-212ENST00000488896 PPFIA3O75145 1194 aa10.25□□□□□ -0.77
PTPN4-212ENST00000488896 LCE2AQ5TA79 106 aaPredicted RBP10.25□□□□□ -0.77
PTPN4-212ENST00000488896 LCE2CQ5TA81 110 aa10.25□□□□□ -0.77
PTPN4-212ENST00000488896 LYSMD3Q7Z3D4 306 aa10.25□□□□□ -0.77
PTPN4-212ENST00000488896 RHOQP17081 205 aa10.24□□□□□ -0.77
PTPN4-212ENST00000488896 RNF144AP50876 292 aaPredicted RBP10.24□□□□□ -0.77
PTPN4-212ENST00000488896 MAP7D1Q3KQU3 841 aa10.24□□□□□ -0.77
PTPN4-212ENST00000488896 SLC27A3Q5K4L6 730 aa10.24□□□□□ -0.77
PTPN4-212ENST00000488896 CHIC2Q9UKJ5 165 aa10.24□□□□□ -0.77
PTPN4-212ENST00000488896 GNRH1P01148 92 aa10.23□□□□□ -0.77
PTPN4-212ENST00000488896 CLN3Q13286 438 aa10.23□□□□□ -0.77
PTPN4-212ENST00000488896 SIRT1Q96EB6 747 aa10.23□□□□□ -0.77
PTPN4-212ENST00000488896 NPAS3Q8IXF0 933 aa10.22□□□□□ -0.77
PTPN4-212ENST00000488896 DEPDC4Q8N2C3 294 aa10.22□□□□□ -0.77
PTPN4-212ENST00000488896 FNBP4Q8N3X1 1017 aaPredicted RBP10.22□□□□□ -0.77
PTPN4-212ENST00000488896 CCDC155Q8N6L0 562 aa10.22□□□□□ -0.77
PTPN4-212ENST00000488896 IRF7Q92985 503 aa10.22□□□□□ -0.77
PTPN4-212ENST00000488896 CNKSR1Q969H4 720 aa10.22□□□□□ -0.77
PTPN4-212ENST00000488896 ERBB4Q15303 1308 aa10.22□□□□□ -0.77
PTPN4-212ENST00000488896 IL2RAP01589 272 aa10.21□□□□□ -0.77
PTPN4-212ENST00000488896 POU4F2Q12837 409 aa10.2□□□□□ -0.78
PTPN4-212ENST00000488896 A6NJR5 290 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 GPC1P35052 558 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 GMPRP36959 345 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 CENPCQ03188 943 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 NCOA4Q13772 614 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 EML3Q32P44 896 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 GLMNQ92990 594 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 ESYT1Q9BSJ8 1104 aa10.19□□□□□ -0.78
PTPN4-212ENST00000488896 SLC35F4A4IF30 521 aa10.18□□□□□ -0.78
PTPN4-212ENST00000488896 USP17L5A8MUK1 530 aa10.18□□□□□ -0.78
PTPN4-212ENST00000488896 ESCO1Q5FWF5 840 aa10.18□□□□□ -0.78
PTPN4-212ENST00000488896 TBC1D9Q6ZT07 1266 aa10.18□□□□□ -0.78
PTPN4-212ENST00000488896 ETNK1Q9HBU6 452 aa10.18□□□□□ -0.78
PTPN4-212ENST00000488896 SENP3-EIF4A1A0A087X0R7 540 aa10.17□□□□□ -0.78
PTPN4-212ENST00000488896 XAGE2Q96GT9 111 aa10.17□□□□□ -0.78
PTPN4-212ENST00000488896 UCN2Q96RP3 112 aa10.17□□□□□ -0.78
PTPN4-212ENST00000488896 GRIP2Q9C0E4 1043 aa10.17□□□□□ -0.78
PTPN4-212ENST00000488896 CDC14CA4D256 554 aa10.16□□□□□ -0.78
PTPN4-212ENST00000488896 GDF10P55107 478 aa10.16□□□□□ -0.78
PTPN4-212ENST00000488896 PSME1Q06323 249 aa10.16□□□□□ -0.78
PTPN4-212ENST00000488896 NFATC2IPQ8NCF5 419 aa10.16□□□□□ -0.78
PTPN4-212ENST00000488896 CALR3Q96L12 384 aaKnown RBP10.16□□□□□ -0.78
PTPN4-212ENST00000488896 SERTAD1Q9UHV2 236 aa10.16□□□□□ -0.78
PTPN4-212ENST00000488896 NOD1Q9Y239 953 aa10.16□□□□□ -0.78
PTPN4-212ENST00000488896 PHKA2P46019 1235 aa10.15□□□□□ -0.78
PTPN4-212ENST00000488896 ZSCAN10Q96SZ4 725 aaPredicted RBP10.15□□□□□ -0.78
PTPN4-212ENST00000488896 ZNF777Q9ULD5 760 aaPredicted RBP10.15□□□□□ -0.78
PTPN4-212ENST00000488896 ITGA6P23229 1130 aa10.14□□□□□ -0.79
PTPN4-212ENST00000488896 GTF2E1P29083 439 aaPredicted RBP10.14□□□□□ -0.79
PTPN4-212ENST00000488896 SCNN1DP51172 638 aa10.14□□□□□ -0.79
PTPN4-212ENST00000488896 TLR1Q15399 786 aa10.14□□□□□ -0.79
PTPN4-212ENST00000488896 TMEM214Q6NUQ4 689 aaKnown RBP10.14□□□□□ -0.79
PTPN4-212ENST00000488896 NBPF10Q6P3W6 841 aaKnown RBP10.14□□□□□ -0.79
PTPN4-212ENST00000488896 VWA5B2Q8N398 1253 aa10.14□□□□□ -0.79
PTPN4-212ENST00000488896 NBPF15Q8N660 670 aa10.14□□□□□ -0.79
PTPN4-212ENST00000488896 GAS2L1Q99501 681 aaPredicted RBP10.14□□□□□ -0.79
PTPN4-212ENST00000488896 GTF3C3Q9Y5Q9 886 aa10.14□□□□□ -0.79
PTPN4-212ENST00000488896 USP17L3A6NCW0 530 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 USP17L4A6NCW7 530 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 ATP9BO43861 1147 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 GTF2IP78347 998 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 USP17L2Q6R6M4 530 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 RIPOR1Q6ZS17 1223 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 USP17L1Q7RTZ2 530 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 PCDHGA11Q9Y5H2 935 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 HRH3Q9Y5N1 445 aa10.13□□□□□ -0.79
PTPN4-212ENST00000488896 WASLO00401 505 aaPredicted RBP10.12□□□□□ -0.79
PTPN4-212ENST00000488896 INHAP05111 366 aa10.12□□□□□ -0.79
PTPN4-212ENST00000488896 TAS1R3Q7RTX0 852 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms