RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ERBB3P21860 1342 aa15.7■□□□□ 0.1
HDAC6-230ENST00000488543 MTHFSDQ2M296 383 aaKnown RBP15.7■□□□□ 0.1
HDAC6-230ENST00000488543 NOP58Q9Y2X3 529 aaKnown RBP15.7■□□□□ 0.1
HDAC6-230ENST00000488543 EXOSC9Q06265 439 aaKnown RBP15.69■□□□□ 0.1
HDAC6-230ENST00000488543 NPM2Q86SE8 214 aaKnown RBP15.69■□□□□ 0.1
HDAC6-230ENST00000488543 CRYBG1Q9Y4K1 1723 aa15.69■□□□□ 0.1
HDAC6-230ENST00000488543 RGPD2P0DJD1 1756 aa15.68■□□□□ 0.1
HDAC6-230ENST00000488543 NLRP2Q9NX02 1062 aa15.68■□□□□ 0.1
HDAC6-230ENST00000488543 CPDO75976 1380 aa15.68■□□□□ 0.1
HDAC6-230ENST00000488543 CT47B1P0C2W7 299 aaPredicted RBP15.68■□□□□ 0.1
HDAC6-230ENST00000488543 ZNF853P0CG23 659 aa15.67■□□□□ 0.1
HDAC6-230ENST00000488543 CSB-PGBD3P0DP91 1061 aa15.67■□□□□ 0.1
HDAC6-230ENST00000488543 AHDC1Q5TGY3 1603 aaPredicted RBP15.67■□□□□ 0.1
HDAC6-230ENST00000488543 LMOD3Q0VAK6 560 aa15.67■□□□□ 0.1
HDAC6-230ENST00000488543 MCM10Q7L590 875 aa15.66■□□□□ 0.1
HDAC6-230ENST00000488543 COL18A1P39060 1754 aa15.66■□□□□ 0.1
HDAC6-230ENST00000488543 CALD1Q05682 793 aaKnown RBP15.65■□□□□ 0.1
HDAC6-230ENST00000488543 IFT57Q9NWB7 429 aa15.65■□□□□ 0.1
HDAC6-230ENST00000488543 LAS1LQ9Y4W2 734 aaKnown RBP15.65■□□□□ 0.1
HDAC6-230ENST00000488543 PDE3AQ14432 1141 aa15.64■□□□□ 0.09
HDAC6-230ENST00000488543 STRN4Q9NRL3 753 aa15.64■□□□□ 0.09
HDAC6-230ENST00000488543 CAMTA1Q9Y6Y1 1673 aa15.64■□□□□ 0.09
HDAC6-230ENST00000488543 NUTM2BA6NNL0 878 aaPredicted RBP15.63■□□□□ 0.09
HDAC6-230ENST00000488543 NUTM2EB1AL46 878 aaPredicted RBP15.63■□□□□ 0.09
HDAC6-230ENST00000488543 ADAMTS2O95450 1211 aa15.63■□□□□ 0.09
HDAC6-230ENST00000488543 NUTM2AQ8IVF1 878 aaPredicted RBP15.63■□□□□ 0.09
HDAC6-230ENST00000488543 BCL2L13Q9BXK5 485 aa15.63■□□□□ 0.09
HDAC6-230ENST00000488543 PHLPP1O60346 1717 aa15.63■□□□□ 0.09
HDAC6-230ENST00000488543 GNAI1P63096 354 aa15.62■□□□□ 0.09
HDAC6-230ENST00000488543 COL16A1Q07092 1604 aaPredicted RBP15.62■□□□□ 0.09
HDAC6-230ENST00000488543 ANP32AP39687 249 aaKnown RBP15.62■□□□□ 0.09
HDAC6-230ENST00000488543 MBIPQ9NS73 344 aa15.62■□□□□ 0.09
HDAC6-230ENST00000488543 ABCA3Q99758 1704 aa15.62■□□□□ 0.09
HDAC6-230ENST00000488543 CFAP44Q96MT7 982 aa15.61■□□□□ 0.09
HDAC6-230ENST00000488543 BTG4Q9NY30 223 aa15.61■□□□□ 0.09
HDAC6-230ENST00000488543 TNNQ9UQP3 1299 aa15.61■□□□□ 0.09
HDAC6-230ENST00000488543 LRRC37A3O60309 1634 aa15.61■□□□□ 0.09
HDAC6-230ENST00000488543 SSH1Q8WYL5 1049 aa15.61■□□□□ 0.09
HDAC6-230ENST00000488543 LARP1Q6PKG0 1096 aaKnown RBP15.6■□□□□ 0.09
HDAC6-230ENST00000488543 TOM1L2Q6ZVM7 507 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 GAS2L2Q8NHY3 880 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 PANK1Q8TE04 598 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 FRAT1Q92837 279 aaPredicted RBP15.6■□□□□ 0.09
HDAC6-230ENST00000488543 CRB1P82279 1406 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 EVA1CP58658 441 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 USP35Q9P2H5 1018 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 NCAPD2Q15021 1401 aa15.6■□□□□ 0.09
HDAC6-230ENST00000488543 CANXP27824 592 aaKnown RBP15.59■□□□□ 0.09
HDAC6-230ENST00000488543 KLHL34Q8N239 644 aa15.59■□□□□ 0.09
HDAC6-230ENST00000488543 IPO9Q96P70 1041 aaKnown RBP15.59■□□□□ 0.09
HDAC6-230ENST00000488543 MIS18AQ9NYP9 233 aa15.59■□□□□ 0.09
HDAC6-230ENST00000488543 RLBP1P12271 317 aa15.59■□□□□ 0.09
HDAC6-230ENST00000488543 DEKP35659 375 aaKnown RBP15.59■□□□□ 0.09
HDAC6-230ENST00000488543 WDR17Q8IZU2 1322 aa15.59■□□□□ 0.09
HDAC6-230ENST00000488543 GNAT3A8MTJ3 354 aa15.58■□□□□ 0.09
HDAC6-230ENST00000488543 IL17REQ8NFR9 667 aa15.58■□□□□ 0.09
HDAC6-230ENST00000488543 RTF1Q92541 710 aaKnown RBP15.58■□□□□ 0.09
HDAC6-230ENST00000488543 SMC4Q9NTJ3 1288 aa15.58■□□□□ 0.09
HDAC6-230ENST00000488543 COL5A2P05997 1499 aaPredicted RBP15.58■□□□□ 0.08
HDAC6-230ENST00000488543 TPRNQ4KMQ1 711 aa15.58■□□□□ 0.08
HDAC6-230ENST00000488543 TSPYL6Q8N831 410 aa15.58■□□□□ 0.08
HDAC6-230ENST00000488543 RAPGEF4Q8WZA2 1011 aa15.58■□□□□ 0.08
HDAC6-230ENST00000488543 VAMP4O75379 141 aa15.57■□□□□ 0.08
HDAC6-230ENST00000488543 ZNF530Q6P9A1 599 aaPredicted RBP15.57■□□□□ 0.08
HDAC6-230ENST00000488543 LGR6Q9HBX8 967 aa15.57■□□□□ 0.08
HDAC6-230ENST00000488543 LMO7Q8WWI1 1683 aa15.57■□□□□ 0.08
HDAC6-230ENST00000488543 ALDH1L2Q3SY69 923 aa15.57■□□□□ 0.08
HDAC6-230ENST00000488543 PLEKHO1Q53GL0 409 aaPredicted RBP15.57■□□□□ 0.08
HDAC6-230ENST00000488543 COG6Q9Y2V7 657 aa15.57■□□□□ 0.08
HDAC6-230ENST00000488543 KDM2BQ8NHM5 1336 aa15.57■□□□□ 0.08
HDAC6-230ENST00000488543 CHL1O00533 1208 aa15.56■□□□□ 0.08
HDAC6-230ENST00000488543 ELL2O00472 640 aaPredicted RBP15.56■□□□□ 0.08
HDAC6-230ENST00000488543 HSPA1LP34931 641 aa15.56■□□□□ 0.08
HDAC6-230ENST00000488543 ZKSCAN2Q63HK3 967 aa15.56■□□□□ 0.08
HDAC6-230ENST00000488543 MPRIPQ6WCQ1 1025 aa15.56■□□□□ 0.08
HDAC6-230ENST00000488543 MEGF6O75095 1541 aa15.55■□□□□ 0.08
HDAC6-230ENST00000488543 C8orf58Q8NAV2 365 aa15.55■□□□□ 0.08
HDAC6-230ENST00000488543 ZNF428Q96B54 188 aa15.55■□□□□ 0.08
HDAC6-230ENST00000488543 COL22A1Q8NFW1 1626 aaPredicted RBP15.55■□□□□ 0.08
HDAC6-230ENST00000488543 PDE4AP27815 886 aa15.55■□□□□ 0.08
HDAC6-230ENST00000488543 ZBTB47Q9UFB7 747 aaPredicted RBP15.55■□□□□ 0.08
HDAC6-230ENST00000488543 MAP3K5Q99683 1374 aa15.54■□□□□ 0.08
HDAC6-230ENST00000488543 HTATSF1O43719 755 aaKnown RBP15.54■□□□□ 0.08
HDAC6-230ENST00000488543 TATP17735 454 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-230ENST00000488543 BRPF1P55201 1214 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-230ENST00000488543 AMOTQ4VCS5 1084 aa15.54■□□□□ 0.08
HDAC6-230ENST00000488543 ABCC6O95255 1503 aa15.54■□□□□ 0.08
HDAC6-230ENST00000488543 KRT24Q2M2I5 525 aa15.54■□□□□ 0.08
HDAC6-230ENST00000488543 HOMEZQ8IX15 550 aa15.54■□□□□ 0.08
HDAC6-230ENST00000488543 NOB1Q9ULX3 412 aaKnown RBP15.54■□□□□ 0.08
HDAC6-230ENST00000488543 FAM208AQ9UK61 1670 aaKnown RBP15.53■□□□□ 0.08
HDAC6-230ENST00000488543 TRIM27P14373 513 aa15.53■□□□□ 0.08
HDAC6-230ENST00000488543 TWISTNBQ3B726 338 aaPredicted RBP15.53■□□□□ 0.08
HDAC6-230ENST00000488543 MRPL50Q8N5N7 158 aaKnown RBP15.53■□□□□ 0.08
HDAC6-230ENST00000488543 CLUAP1Q96AJ1 413 aa15.53■□□□□ 0.08
HDAC6-230ENST00000488543 CARD10Q9BWT7 1032 aa15.53■□□□□ 0.08
HDAC6-230ENST00000488543 AKAP4Q5JQC9 854 aa15.52■□□□□ 0.08
HDAC6-230ENST00000488543 C1orf141Q5JVX7 400 aa15.52■□□□□ 0.07
HDAC6-230ENST00000488543 ATF7IPQ6VMQ6 1270 aa15.52■□□□□ 0.07
HDAC6-230ENST00000488543 DZIP1LQ8IYY4 767 aaKnown RBP15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms