RNA–Protein interactions for RNA: ENST00000488016.1

NECTIN3-209, Transcript of nectin cell adhesion molecule 3, humanhuman

TSL 3

Gene NECTIN3, Length 829 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECTIN3-209ENST00000488016 NPDC1Q9NQX5 325 aaPredicted RBP11.28□□□□□ -0.6
NECTIN3-209ENST00000488016 SRCAPQ6ZRS2 3230 aa11.28□□□□□ -0.6
NECTIN3-209ENST00000488016 MSH6P52701 1360 aa11.28□□□□□ -0.6
NECTIN3-209ENST00000488016 YTHDC2Q9H6S0 1430 aaKnown RBP11.27□□□□□ -0.6
NECTIN3-209ENST00000488016 NUDT18Q6ZVK8 323 aa11.27□□□□□ -0.61
NECTIN3-209ENST00000488016 WAPLQ7Z5K2 1190 aa11.27□□□□□ -0.61
NECTIN3-209ENST00000488016 TSR3Q9UJK0 312 aaKnown RBP11.27□□□□□ -0.61
NECTIN3-209ENST00000488016 HPS5Q9UPZ3 1129 aa11.27□□□□□ -0.61
NECTIN3-209ENST00000488016 ADGRB1O14514 1584 aa11.27□□□□□ -0.61
NECTIN3-209ENST00000488016 PTCH1Q13635 1447 aa11.26□□□□□ -0.61
NECTIN3-209ENST00000488016 NUTM2FA1L443 756 aa11.26□□□□□ -0.61
NECTIN3-209ENST00000488016 LRPPRCP42704 1394 aaKnown RBP11.26□□□□□ -0.61
NECTIN3-209ENST00000488016 ROBO1Q9Y6N7 1651 aa11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 SAFB2Q14151 953 aaKnown RBP eCLIP11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 TTC13Q8NBP0 860 aa11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 WBP1LQ9NX94 342 aa11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 KNDC1Q76NI1 1749 aa11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 PRAG1Q86YV5 1406 aa11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 ADGRL3Q9HAR2 1447 aa11.25□□□□□ -0.61
NECTIN3-209ENST00000488016 LAMC1P11047 1609 aa11.24□□□□□ -0.61
NECTIN3-209ENST00000488016 NBPF1Q3BBV0 1214 aa11.24□□□□□ -0.61
NECTIN3-209ENST00000488016 SMYD5Q6GMV2 418 aa11.24□□□□□ -0.61
NECTIN3-209ENST00000488016 SAMD7Q7Z3H4 446 aa11.24□□□□□ -0.61
NECTIN3-209ENST00000488016 TECPR2O15040 1411 aa11.24□□□□□ -0.61
NECTIN3-209ENST00000488016 C3orf80F5H4A9 247 aa11.23□□□□□ -0.61
NECTIN3-209ENST00000488016 PTGDRQ13258 359 aa11.23□□□□□ -0.61
NECTIN3-209ENST00000488016 TRAK1Q9UPV9 953 aa11.23□□□□□ -0.61
NECTIN3-209ENST00000488016 PPP4CP60510 307 aa11.22□□□□□ -0.61
NECTIN3-209ENST00000488016 MST1RQ04912 1400 aa11.22□□□□□ -0.61
NECTIN3-209ENST00000488016 NBPF8Q3BBV2 869 aa11.22□□□□□ -0.61
NECTIN3-209ENST00000488016 VSIG10Q8N0Z9 540 aa11.22□□□□□ -0.61
NECTIN3-209ENST00000488016 ABCC11Q96J66 1382 aa11.22□□□□□ -0.61
NECTIN3-209ENST00000488016 C19orf44Q9H6X5 657 aa11.22□□□□□ -0.61
NECTIN3-209ENST00000488016 NCOA3Q9Y6Q9 1424 aa11.21□□□□□ -0.61
NECTIN3-209ENST00000488016 TESPA1A2RU30 521 aaPredicted RBP11.21□□□□□ -0.61
NECTIN3-209ENST00000488016 ATF3P18847 181 aa11.21□□□□□ -0.61
NECTIN3-209ENST00000488016 DDX17Q92841 729 aaKnown RBP11.21□□□□□ -0.61
NECTIN3-209ENST00000488016 PRAM1Q96QH2 718 aa11.21□□□□□ -0.61
NECTIN3-209ENST00000488016 SLAIN2Q9P270 581 aa11.21□□□□□ -0.61
NECTIN3-209ENST00000488016 RNF40O75150 1001 aa11.2□□□□□ -0.62
NECTIN3-209ENST00000488016 FCHSD2O94868 740 aa11.2□□□□□ -0.62
NECTIN3-209ENST00000488016 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
NECTIN3-209ENST00000488016 HIRIP3Q9BW71 556 aaPredicted RBP11.2□□□□□ -0.62
NECTIN3-209ENST00000488016 ARHGEF28Q8N1W1 1705 aaKnown RBP11.2□□□□□ -0.62
NECTIN3-209ENST00000488016 FAM135BQ49AJ0 1406 aa11.19□□□□□ -0.62
NECTIN3-209ENST00000488016 TONSLQ96HA7 1378 aa11.19□□□□□ -0.62
NECTIN3-209ENST00000488016 TRPM1Q7Z4N2 1603 aa11.19□□□□□ -0.62
NECTIN3-209ENST00000488016 MINK1Q8N4C8 1332 aaPredicted RBP11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 SLC4A3P48751 1232 aa11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 BRINP3Q76B58 766 aa11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 DLC1Q96QB1 1528 aa11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 C1orf167Q5SNV9 1468 aa11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 KIAA1210Q9ULL0 1709 aa11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 DCCP43146 1447 aa11.18□□□□□ -0.62
NECTIN3-209ENST00000488016 CDC42BPGQ6DT37 1551 aa11.17□□□□□ -0.62
NECTIN3-209ENST00000488016 ORAI2Q96SN7 254 aa11.17□□□□□ -0.62
NECTIN3-209ENST00000488016 POGKQ9P215 609 aa11.17□□□□□ -0.62
NECTIN3-209ENST00000488016 PHLPP1O60346 1717 aa11.16□□□□□ -0.62
NECTIN3-209ENST00000488016 ITGBL1O95965 494 aaPredicted RBP11.16□□□□□ -0.62
NECTIN3-209ENST00000488016 FMN2Q9NZ56 1722 aa11.15□□□□□ -0.62
NECTIN3-209ENST00000488016 RBM46Q8TBY0 533 aaKnown RBP11.15□□□□□ -0.62
NECTIN3-209ENST00000488016 CCER1Q8TC90 406 aaPredicted RBP11.15□□□□□ -0.62
NECTIN3-209ENST00000488016 NECTIN2Q92692 538 aa11.15□□□□□ -0.62
NECTIN3-209ENST00000488016 COL16A1Q07092 1604 aaPredicted RBP11.15□□□□□ -0.62
NECTIN3-209ENST00000488016 USP32Q8NFA0 1604 aa11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 RGPD8O14715 1765 aaPredicted RBP11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 SWT1Q5T5J6 900 aaKnown RBP11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 RBM26Q5T8P6 1007 aaKnown RBP11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 SLF2Q8IX21 1173 aa11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 EYA1Q99502 592 aa11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 ROCK2O75116 1388 aaKnown RBP11.14□□□□□ -0.63
NECTIN3-209ENST00000488016 AHDC1Q5TGY3 1603 aaPredicted RBP11.13□□□□□ -0.63
NECTIN3-209ENST00000488016 XPCQ01831 940 aaPredicted RBP11.13□□□□□ -0.63
NECTIN3-209ENST00000488016 NHSL1Q5SYE7 1610 aa11.13□□□□□ -0.63
NECTIN3-209ENST00000488016 PRR36Q9H6K5 1346 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 ADGRB2O60241 1585 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 A0A0G2JS52 829 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 KCNC4Q03721 635 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 ESCO1Q5FWF5 840 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 SIRT1Q96EB6 747 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 ADGRG1Q9Y653 693 aa11.12□□□□□ -0.63
NECTIN3-209ENST00000488016 DNAJB2P25686 324 aa11.11□□□□□ -0.63
NECTIN3-209ENST00000488016 HIC1Q14526 733 aa11.11□□□□□ -0.63
NECTIN3-209ENST00000488016 RALGAPBQ86X10 1494 aa11.11□□□□□ -0.63
NECTIN3-209ENST00000488016 QRICH2Q9H0J4 1663 aa11.11□□□□□ -0.63
NECTIN3-209ENST00000488016 GPRASP1Q5JY77 1395 aa11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 TULP1O00294 542 aaPredicted RBP11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 WASLO00401 505 aaPredicted RBP11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 ZEB1P37275 1124 aaPredicted RBP11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 PMFBP1Q8TBY8 1022 aa11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 TULP4Q9NRJ4 1543 aa11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 CENPJQ9HC77 1338 aaPredicted RBP11.09□□□□□ -0.63
NECTIN3-209ENST00000488016 ATP7BP35670 1465 aa11.08□□□□□ -0.64
NECTIN3-209ENST00000488016 FOXO3O43524 673 aa11.08□□□□□ -0.64
NECTIN3-209ENST00000488016 CARD11Q9BXL7 1154 aa11.08□□□□□ -0.64
NECTIN3-209ENST00000488016 LRP6O75581 1613 aa11.08□□□□□ -0.64
NECTIN3-209ENST00000488016 PXDNQ92626 1479 aa11.07□□□□□ -0.64
NECTIN3-209ENST00000488016 FAM161AQ3B820 660 aa11.07□□□□□ -0.64
NECTIN3-209ENST00000488016 CDK19Q9BWU1 502 aa11.07□□□□□ -0.64
NECTIN3-209ENST00000488016 JCADQ9P266 1359 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms