RNA–Protein interactions for RNA: ENST00000487633.1

COL4A3-206, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 3

Gene COL4A3, Length 524 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-206ENST00000487633 KDM2AQ9Y2K7 1162 aa8.79□□□□□ -1
COL4A3-206ENST00000487633 LTN1O94822 1766 aa8.78□□□□□ -1
COL4A3-206ENST00000487633 CABP2Q9NPB3 220 aa8.78□□□□□ -1
COL4A3-206ENST00000487633 BRCA1P38398 1863 aaKnown RBP8.77□□□□□ -1.01
COL4A3-206ENST00000487633 CD2APQ9Y5K6 639 aa8.77□□□□□ -1.01
COL4A3-206ENST00000487633 PKD1L3Q7Z443 1732 aa8.77□□□□□ -1.01
COL4A3-206ENST00000487633 UBR3Q6ZT12 1888 aa8.77□□□□□ -1.01
COL4A3-206ENST00000487633 KCPQ6ZWJ8 1503 aa8.76□□□□□ -1.01
COL4A3-206ENST00000487633 SLC27A3Q5K4L6 730 aa8.76□□□□□ -1.01
COL4A3-206ENST00000487633 KIF13BQ9NQT8 1826 aa8.75□□□□□ -1.01
COL4A3-206ENST00000487633 CCDC7Q96M83 1385 aa8.75□□□□□ -1.01
COL4A3-206ENST00000487633 SBF1O95248 1867 aa8.75□□□□□ -1.01
COL4A3-206ENST00000487633 PRIM1P49642 420 aaKnown RBP8.75□□□□□ -1.01
COL4A3-206ENST00000487633 FAM161AQ3B820 660 aa8.75□□□□□ -1.01
COL4A3-206ENST00000487633 CABP1Q9NZU7 370 aa8.75□□□□□ -1.01
COL4A3-206ENST00000487633 IL2RBP14784 551 aa8.74□□□□□ -1.01
COL4A3-206ENST00000487633 RBM46Q8TBY0 533 aaKnown RBP8.74□□□□□ -1.01
COL4A3-206ENST00000487633 DDX54Q8TDD1 881 aaKnown RBP8.74□□□□□ -1.01
COL4A3-206ENST00000487633 SYTL4Q96C24 671 aaPredicted RBP8.74□□□□□ -1.01
COL4A3-206ENST00000487633 CCNL1Q9UK58 526 aaPredicted RBP8.74□□□□□ -1.01
COL4A3-206ENST00000487633 FAM208AQ9UK61 1670 aaKnown RBP8.73□□□□□ -1.01
COL4A3-206ENST00000487633 PXDNLA1KZ92 1463 aa8.73□□□□□ -1.01
COL4A3-206ENST00000487633 DCAF11Q8TEB1 546 aa8.73□□□□□ -1.01
COL4A3-206ENST00000487633 NLRP2Q9NX02 1062 aa8.73□□□□□ -1.01
COL4A3-206ENST00000487633 C4BP0C0L5 1744 aa8.73□□□□□ -1.01
COL4A3-206ENST00000487633 NBPF1Q3BBV0 1214 aa8.72□□□□□ -1.01
COL4A3-206ENST00000487633 RRAGCQ9HB90 399 aa8.72□□□□□ -1.01
COL4A3-206ENST00000487633 KIAA1210Q9ULL0 1709 aa8.71□□□□□ -1.01
COL4A3-206ENST00000487633 SRPK2P78362 688 aaKnown RBP8.71□□□□□ -1.02
COL4A3-206ENST00000487633 TTC21BQ7Z4L5 1316 aa8.71□□□□□ -1.02
COL4A3-206ENST00000487633 ANKRD36BQ8N2N9 1353 aa8.71□□□□□ -1.02
COL4A3-206ENST00000487633 ITGB4P16144 1822 aa8.7□□□□□ -1.02
COL4A3-206ENST00000487633 ARFGEF1Q9Y6D6 1849 aa8.7□□□□□ -1.02
COL4A3-206ENST00000487633 TNRC6CQ9HCJ0 1690 aaKnown RBP8.7□□□□□ -1.02
COL4A3-206ENST00000487633 A0A0G2JLW4 131 aa8.7□□□□□ -1.02
COL4A3-206ENST00000487633 FOXN1O15353 648 aa8.7□□□□□ -1.02
COL4A3-206ENST00000487633 PCDH10Q9P2E7 1040 aa8.7□□□□□ -1.02
COL4A3-206ENST00000487633 MAP2P11137 1827 aaKnown RBP8.7□□□□□ -1.02
COL4A3-206ENST00000487633 CCDC88AQ3V6T2 1871 aa8.7□□□□□ -1.02
COL4A3-206ENST00000487633 PHF14O94880 888 aa8.69□□□□□ -1.02
COL4A3-206ENST00000487633 C9orf131Q5VYM1 1079 aa8.69□□□□□ -1.02
COL4A3-206ENST00000487633 ARHGAP27Q6ZUM4 889 aa8.69□□□□□ -1.02
COL4A3-206ENST00000487633 ANKRD24Q8TF21 1146 aa8.69□□□□□ -1.02
COL4A3-206ENST00000487633 BCS1LQ9Y276 419 aa8.69□□□□□ -1.02
COL4A3-206ENST00000487633 MEGF6O75095 1541 aa8.69□□□□□ -1.02
COL4A3-206ENST00000487633 FSTL1Q12841 308 aa8.68□□□□□ -1.02
COL4A3-206ENST00000487633 TNRC18O15417 2968 aaPredicted RBP8.68□□□□□ -1.02
COL4A3-206ENST00000487633 MON2Q7Z3U7 1717 aa8.68□□□□□ -1.02
COL4A3-206ENST00000487633 KCNA3P22001 575 aa8.67□□□□□ -1.02
COL4A3-206ENST00000487633 FBLN1P23142 703 aa8.67□□□□□ -1.02
COL4A3-206ENST00000487633 DPEP1P16444 411 aa8.66□□□□□ -1.02
COL4A3-206ENST00000487633 KCNH5Q8NCM2 988 aa8.66□□□□□ -1.02
COL4A3-206ENST00000487633 LTV1Q96GA3 475 aaPredicted RBP8.66□□□□□ -1.02
COL4A3-206ENST00000487633 VIRMAQ69YN4 1812 aaKnown RBP8.66□□□□□ -1.02
COL4A3-206ENST00000487633 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.65□□□□□ -1.02
COL4A3-206ENST00000487633 NME9Q86XW9 330 aa8.65□□□□□ -1.02
COL4A3-206ENST00000487633 C16orf71Q8IYS4 520 aaPredicted RBP8.65□□□□□ -1.02
COL4A3-206ENST00000487633 MKRN1Q9UHC7 482 aaKnown RBP8.65□□□□□ -1.02
COL4A3-206ENST00000487633 C10orf71Q711Q0 1435 aa8.64□□□□□ -1.03
COL4A3-206ENST00000487633 USP47Q96K76 1375 aa8.64□□□□□ -1.03
COL4A3-206ENST00000487633 POTECB2RU33 542 aa8.64□□□□□ -1.03
COL4A3-206ENST00000487633 LINC00116Q8NCU8 138 aa8.64□□□□□ -1.03
COL4A3-206ENST00000487633 CD163L1Q9NR16 1453 aa8.64□□□□□ -1.03
COL4A3-206ENST00000487633 PALLDQ8WX93 1383 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 FCHSD2O94868 740 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 MMP10P09238 476 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 POTEIP0CG38 1075 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 POTEJP0CG39 1038 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 RASSF7Q02833 373 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.63□□□□□ -1.03
COL4A3-206ENST00000487633 SMC1BQ8NDV3 1235 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 ABHD8Q96I13 439 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 RNF181Q9P0P0 153 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 C4AP0C0L4 1744 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 TIAM2Q8IVF5 1701 aa8.63□□□□□ -1.03
COL4A3-206ENST00000487633 CENPJQ9HC77 1338 aaPredicted RBP8.62□□□□□ -1.03
COL4A3-206ENST00000487633 USHBP1Q8N6Y0 703 aa8.62□□□□□ -1.03
COL4A3-206ENST00000487633 LBX1P52954 281 aa8.61□□□□□ -1.03
COL4A3-206ENST00000487633 ITPK1Q13572 414 aa8.61□□□□□ -1.03
COL4A3-206ENST00000487633 ZCRB1Q8TBF4 217 aaKnown RBP8.61□□□□□ -1.03
COL4A3-206ENST00000487633 MYH14Q7Z406 1995 aaKnown RBP8.61□□□□□ -1.03
COL4A3-206ENST00000487633 USP31Q70CQ4 1352 aa8.61□□□□□ -1.03
COL4A3-206ENST00000487633 SBNO2Q9Y2G9 1366 aa8.61□□□□□ -1.03
COL4A3-206ENST00000487633 TTC21AQ8NDW8 1320 aa8.6□□□□□ -1.03
COL4A3-206ENST00000487633 MPRIPQ6WCQ1 1025 aa8.6□□□□□ -1.03
COL4A3-206ENST00000487633 AK7Q96M32 723 aa8.6□□□□□ -1.03
COL4A3-206ENST00000487633 KTN1Q86UP2 1357 aaKnown RBP8.6□□□□□ -1.03
COL4A3-206ENST00000487633 PLEKHG2Q9H7P9 1386 aa8.6□□□□□ -1.03
COL4A3-206ENST00000487633 KDM2BQ8NHM5 1336 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 CHRNA5P30532 468 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 TGFB2P61812 414 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 FLAD1Q8NFF5 587 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 DCAF5Q96JK2 942 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 PRDM10Q9NQV6 1147 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 NSD3Q9BZ95 1437 aa8.59□□□□□ -1.03
COL4A3-206ENST00000487633 RGS19P49795 217 aa8.58□□□□□ -1.04
COL4A3-206ENST00000487633 MLLT1Q03111 559 aaPredicted RBP8.58□□□□□ -1.04
COL4A3-206ENST00000487633 NBPF6Q5VWK0 638 aa8.58□□□□□ -1.04
COL4A3-206ENST00000487633 NBPF4Q96M43 638 aa8.58□□□□□ -1.04
COL4A3-206ENST00000487633 KDM6AO15550 1401 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms