RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 RGPD2P0DJD1 1756 aa16.97■□□□□ 0.31
VPS16-208ENST00000487461 KCNQ4P56696 695 aa16.96■□□□□ 0.31
VPS16-208ENST00000487461 SLC27A3Q5K4L6 730 aa16.96■□□□□ 0.31
VPS16-208ENST00000487461 AKT1S1Q96B36 256 aa16.96■□□□□ 0.31
VPS16-208ENST00000487461 SGIP1Q9BQI5 828 aa16.96■□□□□ 0.31
VPS16-208ENST00000487461 INSRP06213 1382 aa16.96■□□□□ 0.31
VPS16-208ENST00000487461 RAPGEF4Q8WZA2 1011 aa16.95■□□□□ 0.3
VPS16-208ENST00000487461 EMILIN1Q9Y6C2 1016 aa16.95■□□□□ 0.3
VPS16-208ENST00000487461 NSD3Q9BZ95 1437 aa16.95■□□□□ 0.3
VPS16-208ENST00000487461 NSD2O96028 1365 aa16.94■□□□□ 0.3
VPS16-208ENST00000487461 DCAF8L1A6NGE4 600 aa16.94■□□□□ 0.3
VPS16-208ENST00000487461 CGNL1Q0VF96 1302 aa16.94■□□□□ 0.3
VPS16-208ENST00000487461 FLT4P35916 1363 aa16.93■□□□□ 0.3
VPS16-208ENST00000487461 PAPPAQ13219 1627 aa16.93■□□□□ 0.3
VPS16-208ENST00000487461 TATP17735 454 aaPredicted RBP16.93■□□□□ 0.3
VPS16-208ENST00000487461 SMG6Q86US8 1419 aaKnown RBP16.93■□□□□ 0.3
VPS16-208ENST00000487461 KIF24Q5T7B8 1368 aa16.92■□□□□ 0.3
VPS16-208ENST00000487461 YY1P25490 414 aa16.92■□□□□ 0.3
VPS16-208ENST00000487461 SYT17Q9BSW7 474 aa16.92■□□□□ 0.3
VPS16-208ENST00000487461 FHDC1Q9C0D6 1143 aaPredicted RBP16.92■□□□□ 0.3
VPS16-208ENST00000487461 PPM1GO15355 546 aaPredicted RBP16.91■□□□□ 0.3
VPS16-208ENST00000487461 POLR3GLQ9BT43 218 aa16.91■□□□□ 0.3
VPS16-208ENST00000487461 ARXQ96QS3 562 aa16.9■□□□□ 0.3
VPS16-208ENST00000487461 MYOM1P52179 1685 aa16.9■□□□□ 0.3
VPS16-208ENST00000487461 SHANK3Q9BYB0 1731 aa16.9■□□□□ 0.3
VPS16-208ENST00000487461 KIF20BQ96Q89 1820 aa16.89■□□□□ 0.29
VPS16-208ENST00000487461 TFCP2L1Q9NZI6 479 aa16.89■□□□□ 0.29
VPS16-208ENST00000487461 CCNL1Q9UK58 526 aaPredicted RBP16.89■□□□□ 0.29
VPS16-208ENST00000487461 WASHC2AQ641Q2 1341 aa16.89■□□□□ 0.29
VPS16-208ENST00000487461 PNPLA7Q6ZV29 1317 aa16.89■□□□□ 0.29
VPS16-208ENST00000487461 CYP27B1O15528 508 aa16.88■□□□□ 0.29
VPS16-208ENST00000487461 SLC16A10Q8TF71 515 aa16.88■□□□□ 0.29
VPS16-208ENST00000487461 POLKQ9UBT6 870 aa16.88■□□□□ 0.29
VPS16-208ENST00000487461 PCDH11XQ9BZA7 1347 aa16.88■□□□□ 0.29
VPS16-208ENST00000487461 PCDH11YQ9BZA8 1340 aa16.88■□□□□ 0.29
VPS16-208ENST00000487461 HSPA5P11021 654 aaKnown RBP16.87■□□□□ 0.29
VPS16-208ENST00000487461 DOT1LQ8TEK3 1739 aa16.87■□□□□ 0.29
VPS16-208ENST00000487461 EIF4G2P78344 907 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS16-208ENST00000487461 EYA1Q99502 592 aa16.86■□□□□ 0.29
VPS16-208ENST00000487461 MPRIPQ6WCQ1 1025 aa16.85■□□□□ 0.29
VPS16-208ENST00000487461 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
VPS16-208ENST00000487461 TNNT2P45379 298 aaPredicted RBP16.84■□□□□ 0.29
VPS16-208ENST00000487461 PANK3Q9H999 370 aa16.84■□□□□ 0.29
VPS16-208ENST00000487461 LY75O60449 1722 aa16.83■□□□□ 0.28
VPS16-208ENST00000487461 NCAPD2Q15021 1401 aa16.83■□□□□ 0.28
VPS16-208ENST00000487461 NKX1-1Q15270 411 aaPredicted RBP16.83■□□□□ 0.28
VPS16-208ENST00000487461 COL23A1Q86Y22 540 aaPredicted RBP16.83■□□□□ 0.28
VPS16-208ENST00000487461 POLD1P28340 1107 aa16.82■□□□□ 0.28
VPS16-208ENST00000487461 PIGBQ92521 554 aa16.82■□□□□ 0.28
VPS16-208ENST00000487461 SPG7Q9UQ90 795 aa16.82■□□□□ 0.28
VPS16-208ENST00000487461 MAP3K5Q99683 1374 aa16.81■□□□□ 0.28
VPS16-208ENST00000487461 EIF4A2Q14240 407 aaKnown RBP16.81■□□□□ 0.28
VPS16-208ENST00000487461 PALLDQ8WX93 1383 aa16.8■□□□□ 0.28
VPS16-208ENST00000487461 MAP2P11137 1827 aaKnown RBP16.8■□□□□ 0.28
VPS16-208ENST00000487461 MSH5O43196 834 aa16.8■□□□□ 0.28
VPS16-208ENST00000487461 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.8■□□□□ 0.284e-6■□□□□ 11.2
VPS16-208ENST00000487461 KLHL34Q8N239 644 aa16.79■□□□□ 0.28
VPS16-208ENST00000487461 SMARCC1Q92922 1105 aaPredicted RBP16.79■□□□□ 0.28
VPS16-208ENST00000487461 QSER1Q2KHR3 1735 aa16.79■□□□□ 0.28
VPS16-208ENST00000487461 TUBGCP6Q96RT7 1819 aa16.77■□□□□ 0.28
VPS16-208ENST00000487461 ANKRD26Q9UPS8 1709 aa16.77■□□□□ 0.28
VPS16-208ENST00000487461 PHKG2P15735 406 aa16.77■□□□□ 0.28
VPS16-208ENST00000487461 HMGB2P26583 209 aaKnown RBP16.76■□□□□ 0.27
VPS16-208ENST00000487461 GPR162Q16538 588 aa16.76■□□□□ 0.27
VPS16-208ENST00000487461 MSL1Q68DK7 614 aa16.76■□□□□ 0.27
VPS16-208ENST00000487461 IFNL2Q8IZJ0 200 aa16.76■□□□□ 0.27
VPS16-208ENST00000487461 PKD1L3Q7Z443 1732 aa16.76■□□□□ 0.27
VPS16-208ENST00000487461 AMIGO3Q86WK7 504 aa16.75■□□□□ 0.27
VPS16-208ENST00000487461 NLGN2Q8NFZ4 835 aa16.75■□□□□ 0.27
VPS16-208ENST00000487461 COL24A1Q17RW2 1714 aa16.75■□□□□ 0.27
VPS16-208ENST00000487461 TOGARAM1Q9Y4F4 1720 aa16.74■□□□□ 0.27
VPS16-208ENST00000487461 SMIM5Q71RC9 77 aa16.74■□□□□ 0.27
VPS16-208ENST00000487461 MORC1Q86VD1 984 aa16.74■□□□□ 0.27
VPS16-208ENST00000487461 FLAD1Q8NFF5 587 aa16.74■□□□□ 0.27
VPS16-208ENST00000487461 TMOD3Q9NYL9 352 aa16.74■□□□□ 0.27
VPS16-208ENST00000487461 ASAP1Q9ULH1 1129 aa16.74■□□□□ 0.27
VPS16-208ENST00000487461 IGSF1Q8N6C5 1336 aa16.73■□□□□ 0.27
VPS16-208ENST00000487461 UTRNP46939 3433 aa16.73■□□□□ 0.27
VPS16-208ENST00000487461 ITGB4P16144 1822 aa16.73■□□□□ 0.27
VPS16-208ENST00000487461 LOC102724428A0A0B4J2F2 783 aa16.73■□□□□ 0.27
VPS16-208ENST00000487461 SIK1P57059 783 aa16.73■□□□□ 0.27
VPS16-208ENST00000487461 ZNF784Q8NCA9 323 aaPredicted RBP16.73■□□□□ 0.27
VPS16-208ENST00000487461 PELP1Q8IZL8 1130 aaKnown RBP16.72■□□□□ 0.27
VPS16-208ENST00000487461 LINC00116Q8NCU8 138 aa16.72■□□□□ 0.27
VPS16-208ENST00000487461 AK7Q96M32 723 aa16.72■□□□□ 0.27
VPS16-208ENST00000487461 ITPK1Q13572 414 aa16.71■□□□□ 0.27
VPS16-208ENST00000487461 ATG3Q9NT62 314 aa16.71■□□□□ 0.27
VPS16-208ENST00000487461 KNSTRNQ9Y448 316 aa16.71■□□□□ 0.27
VPS16-208ENST00000487461 C5P01031 1676 aa16.71■□□□□ 0.27
VPS16-208ENST00000487461 PHF14O94880 888 aa16.7■□□□□ 0.26
VPS16-208ENST00000487461 PLEKHO1Q53GL0 409 aaPredicted RBP16.7■□□□□ 0.26
VPS16-208ENST00000487461 TAF1LQ8IZX4 1826 aa16.69■□□□□ 0.26
VPS16-208ENST00000487461 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.69■□□□□ 0.26
VPS16-208ENST00000487461 ATP6V1AP38606 617 aa16.69■□□□□ 0.26
VPS16-208ENST00000487461 AEBP1Q8IUX7 1158 aa16.69■□□□□ 0.26
VPS16-208ENST00000487461 ERVV-2B6SEH9 535 aa16.68■□□□□ 0.26
VPS16-208ENST00000487461 AMER1Q5JTC6 1135 aaPredicted RBP16.68■□□□□ 0.26
VPS16-208ENST00000487461 C4BP0C0L5 1744 aa16.67■□□□□ 0.26
VPS16-208ENST00000487461 PLEKHG2Q9H7P9 1386 aa16.67■□□□□ 0.26
VPS16-208ENST00000487461 HSP90AB1P08238 724 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms