RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 ZNF831Q5JPB2 1677 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 ZBTB7CA1YPR0 619 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 EXOC5O00471 708 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 PPM1GO15355 546 aaPredicted RBP8.95□□□□□ -0.98
PTPRE-209ENST00000487428 TNNT2P45379 298 aaPredicted RBP8.95□□□□□ -0.98
PTPRE-209ENST00000487428 AMOTQ4VCS5 1084 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 FAM196AQ6ZSG2 479 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 RAPGEF4Q8WZA2 1011 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 NUDCQ9Y266 331 aa8.95□□□□□ -0.98
PTPRE-209ENST00000487428 FCHSD2O94868 740 aa8.94□□□□□ -0.98
PTPRE-209ENST00000487428 TATP17735 454 aaPredicted RBP8.94□□□□□ -0.98
PTPRE-209ENST00000487428 NKX1-1Q15270 411 aaPredicted RBP8.94□□□□□ -0.98
PTPRE-209ENST00000487428 PCDH11XQ9BZA7 1347 aa8.94□□□□□ -0.98
PTPRE-209ENST00000487428 PCDH11YQ9BZA8 1340 aa8.94□□□□□ -0.98
PTPRE-209ENST00000487428 SOCS7O14512 581 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 PDE3BQ13370 1112 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 ZCRB1Q8TBF4 217 aaKnown RBP8.93□□□□□ -0.98
PTPRE-209ENST00000487428 LTV1Q96GA3 475 aaPredicted RBP8.93□□□□□ -0.98
PTPRE-209ENST00000487428 USP35Q9P2H5 1018 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 LY75O60449 1722 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 DOT1LQ8TEK3 1739 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 TOGARAM1Q9Y4F4 1720 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 SIPA1L3O60292 1781 aaPredicted RBP8.93□□□□□ -0.98
PTPRE-209ENST00000487428 BTAF1O14981 1849 aa8.93□□□□□ -0.98
PTPRE-209ENST00000487428 RREB1Q92766 1687 aa8.92□□□□□ -0.98
PTPRE-209ENST00000487428 CICQ96RK0 1608 aaPredicted RBP8.92□□□□□ -0.98
PTPRE-209ENST00000487428 MARCH10Q8NA82 808 aaPredicted RBP8.92□□□□□ -0.98
PTPRE-209ENST00000487428 PNNQ9H307 717 aaKnown RBP8.92□□□□□ -0.98
PTPRE-209ENST00000487428 SPG7Q9UQ90 795 aa8.92□□□□□ -0.98
PTPRE-209ENST00000487428 MRC1P22897 1456 aa8.91□□□□□ -0.98
PTPRE-209ENST00000487428 ANP32CO43423 234 aa8.91□□□□□ -0.98
PTPRE-209ENST00000487428 PLEKHO1Q53GL0 409 aaPredicted RBP8.91□□□□□ -0.98
PTPRE-209ENST00000487428 RSPH6AQ9H0K4 717 aa8.91□□□□□ -0.98
PTPRE-209ENST00000487428 HSP90AB1P08238 724 aaKnown RBP8.9□□□□□ -0.98
PTPRE-209ENST00000487428 NCBP3Q53F19 620 aaKnown RBP8.9□□□□□ -0.98
PTPRE-209ENST00000487428 SULT6B1Q6IMI4 303 aa8.9□□□□□ -0.98
PTPRE-209ENST00000487428 IFNL2Q8IZJ0 200 aa8.9□□□□□ -0.98
PTPRE-209ENST00000487428 CYP27B1O15528 508 aa8.89□□□□□ -0.99
PTPRE-209ENST00000487428 HTATSF1O43719 755 aaKnown RBP8.89□□□□□ -0.99
PTPRE-209ENST00000487428 PHKG2P15735 406 aa8.89□□□□□ -0.99
PTPRE-209ENST00000487428 HMGB2P26583 209 aaKnown RBP8.89□□□□□ -0.99
PTPRE-209ENST00000487428 UPF1Q92900 1129 aaKnown RBP eCLIP8.89□□□□□ -0.99
PTPRE-209ENST00000487428 BCL11BQ9C0K0 894 aaPredicted RBP8.89□□□□□ -0.99
PTPRE-209ENST00000487428 TAF1LQ8IZX4 1826 aa8.89□□□□□ -0.99
PTPRE-209ENST00000487428 UBR2Q8IWV8 1755 aa8.89□□□□□ -0.99
PTPRE-209ENST00000487428 QSER1Q2KHR3 1735 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 PAPPAQ13219 1627 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 ERVV-2B6SEH9 535 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 PLSCR1O15162 318 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 AKAP4Q5JQC9 854 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 AEBP1Q8IUX7 1158 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 USHBP1Q8N6Y0 703 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 GAS2L2Q8NHY3 880 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 DCAF5Q96JK2 942 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 PLEKHF1Q96S99 279 aa8.88□□□□□ -0.99
PTPRE-209ENST00000487428 CEMIPQ8WUJ3 1361 aa8.87□□□□□ -0.99
PTPRE-209ENST00000487428 A0A0G2JS52 829 aa8.87□□□□□ -0.99
PTPRE-209ENST00000487428 CCER2I3L3R5 266 aa8.87□□□□□ -0.99
PTPRE-209ENST00000487428 MYT1Q01538 1121 aa8.87□□□□□ -0.99
PTPRE-209ENST00000487428 NUP188Q5SRE5 1749 aa8.86□□□□□ -0.99
PTPRE-209ENST00000487428 U2AF1L5P0DN76 240 aaPredicted RBP8.86□□□□□ -0.99
PTPRE-209ENST00000487428 U2AF1Q01081 240 aaKnown RBP eCLIP8.86□□□□□ -0.99
PTPRE-209ENST00000487428 KDM6AO15550 1401 aaPredicted RBP8.86□□□□□ -0.99
PTPRE-209ENST00000487428 U2SURPO15042 1029 aaKnown RBP8.85□□□□□ -0.99
PTPRE-209ENST00000487428 HMOX1P09601 288 aa8.85□□□□□ -0.99
PTPRE-209ENST00000487428 PRKAR2BP31323 418 aa8.85□□□□□ -0.99
PTPRE-209ENST00000487428 NGEFQ8N5V2 710 aa8.85□□□□□ -0.99
PTPRE-209ENST00000487428 PNISRQ8TF01 805 aaKnown RBP8.85□□□□□ -0.99
PTPRE-209ENST00000487428 MAP3K5Q99683 1374 aa8.85□□□□□ -0.99
PTPRE-209ENST00000487428 KDM3BQ7LBC6 1761 aa8.84□□□□□ -0.99
PTPRE-209ENST00000487428 NEFMP07197 916 aa8.84□□□□□ -0.99
PTPRE-209ENST00000487428 COL5A3P25940 1745 aaPredicted RBP8.84□□□□□ -0.99
PTPRE-209ENST00000487428 BAG6P46379 1132 aa8.84□□□□□ -0.99
PTPRE-209ENST00000487428 MTHFSDQ2M296 383 aaKnown RBP8.84□□□□□ -0.99
PTPRE-209ENST00000487428 C1orf141Q5JVX7 400 aa8.84□□□□□ -0.99
PTPRE-209ENST00000487428 ZNF530Q6P9A1 599 aaPredicted RBP8.84□□□□□ -0.99
PTPRE-209ENST00000487428 DDX54Q8TDD1 881 aaKnown RBP8.84□□□□□ -0.99
PTPRE-209ENST00000487428 CACNA1FO60840 1977 aa8.84□□□□□ -0.99
PTPRE-209ENST00000487428 GNAT3A8MTJ3 354 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 SF3B2Q13435 895 aaKnown RBP8.83□□□□□ -1
PTPRE-209ENST00000487428 WDR43Q15061 677 aaKnown RBP eCLIP8.83□□□□□ -1
PTPRE-209ENST00000487428 RUNDC1Q96C34 613 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 PHACTR3Q96KR7 559 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 CAMKK2Q96RR4 588 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 BABAM1Q9NWV8 329 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 ADAMTS8Q9UP79 889 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 C5P01031 1676 aa8.83□□□□□ -1
PTPRE-209ENST00000487428 RNMTO43148 476 aaKnown RBP8.82□□□□□ -1
PTPRE-209ENST00000487428 TRIM37O94972 964 aa8.82□□□□□ -1
PTPRE-209ENST00000487428 NFE2L2Q16236 605 aa8.82□□□□□ -1
PTPRE-209ENST00000487428 SLC27A3Q5K4L6 730 aa8.82□□□□□ -1
PTPRE-209ENST00000487428 DIEXFQ68CQ4 756 aaKnown RBP8.82□□□□□ -1
PTPRE-209ENST00000487428 SMARCC1Q92922 1105 aaPredicted RBP8.82□□□□□ -1
PTPRE-209ENST00000487428 COL24A1Q17RW2 1714 aa8.82□□□□□ -1
PTPRE-209ENST00000487428 PRIM1P49642 420 aaKnown RBP8.81□□□□□ -1
PTPRE-209ENST00000487428 LMOD3Q0VAK6 560 aa8.81□□□□□ -1
PTPRE-209ENST00000487428 CNGB1Q14028 1251 aaPredicted RBP8.81□□□□□ -1
PTPRE-209ENST00000487428 CCDC27Q2M243 656 aa8.81□□□□□ -1
PTPRE-209ENST00000487428 FAM182BQ5T319 152 aa8.81□□□□□ -1
PTPRE-209ENST00000487428 SLC52A2Q9HAB3 445 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms